RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 ISOC2Q96AB3 205 aa10.06□□□□□ -0.8
C9orf3-221ENST00000489562 NAGKQ9UJ70 344 aa10.06□□□□□ -0.8
C9orf3-221ENST00000489562 CARHSP1Q9Y2V2 147 aaKnown RBP10.06□□□□□ -0.8
C9orf3-221ENST00000489562 TRGV11A0A075B6L2 103 aa10.05□□□□□ -0.8
C9orf3-221ENST00000489562 CBY3A6NI87 242 aa10.05□□□□□ -0.8
C9orf3-221ENST00000489562 B4DEV8 164 aa10.05□□□□□ -0.8
C9orf3-221ENST00000489562 ORM1P02763 201 aa10.05□□□□□ -0.8
C9orf3-221ENST00000489562 CXCL1P09341 107 aa10.05□□□□□ -0.8
C9orf3-221ENST00000489562 ERVFC1-1P60608 527 aa10.05□□□□□ -0.8
C9orf3-221ENST00000489562 MUC21Q5SSG8 566 aa10.05□□□□□ -0.8
C9orf3-221ENST00000489562 Q6ZQT7 251 aa10.05□□□□□ -0.8
C9orf3-221ENST00000489562 C15orf54Q8N8G6 183 aa10.05□□□□□ -0.8
C9orf3-221ENST00000489562 C16orf74Q96GX8 76 aa10.05□□□□□ -0.8
C9orf3-221ENST00000489562 OSTCQ9NRP0 149 aa10.05□□□□□ -0.8
C9orf3-221ENST00000489562 X6R8D5 127 aa10.05□□□□□ -0.8
C9orf3-221ENST00000489562 XKRY2A2RUG3 117 aa10.04□□□□□ -0.8
C9orf3-221ENST00000489562 TMEM189A5PLL7 270 aa10.04□□□□□ -0.8
C9orf3-221ENST00000489562 HTN1P15515 57 aa10.04□□□□□ -0.8
C9orf3-221ENST00000489562 RPS20P60866 119 aaKnown RBP10.04□□□□□ -0.8
C9orf3-221ENST00000489562 NUDT10Q8NFP7 164 aa10.04□□□□□ -0.8
C9orf3-221ENST00000489562 TMEM263Q8WUH6 116 aaKnown RBP10.04□□□□□ -0.8
C9orf3-221ENST00000489562 NUDT11Q96G61 164 aa10.04□□□□□ -0.8
C9orf3-221ENST00000489562 RETNQ9HD89 108 aa10.04□□□□□ -0.8
C9orf3-221ENST00000489562 C11orf21Q9P2W6 132 aa10.04□□□□□ -0.8
C9orf3-221ENST00000489562 MEGF8Q7Z7M0 2845 aa10.04□□□□□ -0.8
C9orf3-221ENST00000489562 IGKV3D-20A0A0C4DH25 116 aa10.03□□□□□ -0.8
C9orf3-221ENST00000489562 ZNF705GA8MUZ8 300 aaPredicted RBP10.03□□□□□ -0.8
C9orf3-221ENST00000489562 M0R036 132 aa10.03□□□□□ -0.8
C9orf3-221ENST00000489562 GATCO43716 136 aaKnown RBP10.03□□□□□ -0.8
C9orf3-221ENST00000489562 CT83Q5H943 113 aa10.03□□□□□ -0.8
C9orf3-221ENST00000489562 DNLZQ5SXM8 178 aa10.03□□□□□ -0.8
C9orf3-221ENST00000489562 OR2D3Q8NGH3 330 aa10.03□□□□□ -0.8
C9orf3-221ENST00000489562 SFRP2Q96HF1 295 aa10.03□□□□□ -0.8
C9orf3-221ENST00000489562 RNASE7Q9H1E1 156 aaKnown RBP10.03□□□□□ -0.8
C9orf3-221ENST00000489562 RPP21Q9H633 154 aaKnown RBP10.03□□□□□ -0.8
C9orf3-221ENST00000489562 NBEAL2Q6ZNJ1 2754 aa10.02□□□□□ -0.81
C9orf3-221ENST00000489562 PPP1R2P9O14990 202 aa10.02□□□□□ -0.81
C9orf3-221ENST00000489562 TYMSP04818 313 aa10.02□□□□□ -0.81
C9orf3-221ENST00000489562 ASIPP42127 132 aa10.02□□□□□ -0.81
C9orf3-221ENST00000489562 ZNF415Q09FC8 603 aa10.02□□□□□ -0.81
C9orf3-221ENST00000489562 OR10G8Q8NGN5 311 aa10.02□□□□□ -0.81
C9orf3-221ENST00000489562 RNASE8Q8TDE3 154 aaKnown RBP10.02□□□□□ -0.81
C9orf3-221ENST00000489562 TP53TG3Q9ULZ0 132 aa10.02□□□□□ -0.81
C9orf3-221ENST00000489562 A8MWL6 223 aa10.01□□□□□ -0.81
C9orf3-221ENST00000489562 MT-ND4LP03901 98 aa10.01□□□□□ -0.81
C9orf3-221ENST00000489562 S100A4P26447 101 aaKnown RBP10.01□□□□□ -0.81
C9orf3-221ENST00000489562 Q8NAQ8 132 aa10.01□□□□□ -0.81
C9orf3-221ENST00000489562 C11orf68Q9H3H3 251 aaKnown RBP10.01□□□□□ -0.81
C9orf3-221ENST00000489562 IGHV3-16A0A0C4DH30 117 aa10□□□□□ -0.81
C9orf3-221ENST00000489562 IGHV4-28A0A0C4DH34 117 aa10□□□□□ -0.81
C9orf3-221ENST00000489562 SNURFLB1AK76 121 aa10□□□□□ -0.81
C9orf3-221ENST00000489562 GNRH2O43555 120 aa10□□□□□ -0.81
C9orf3-221ENST00000489562 MED14OSP0DP75 135 aa10□□□□□ -0.81
C9orf3-221ENST00000489562 AZU1P20160 251 aa10□□□□□ -0.81
C9orf3-221ENST00000489562 TCL1AP56279 114 aa10□□□□□ -0.81
C9orf3-221ENST00000489562 RPL19P84098 196 aaKnown RBP10□□□□□ -0.81
C9orf3-221ENST00000489562 SVBPQ8N300 66 aa10□□□□□ -0.81
C9orf3-221ENST00000489562 C11orf72Q8NBR9 251 aa10□□□□□ -0.81
C9orf3-221ENST00000489562 ANAPC16Q96DE5 110 aa10□□□□□ -0.81
C9orf3-221ENST00000489562 SPXQ9BT56 116 aa10□□□□□ -0.81
C9orf3-221ENST00000489562 TMSB15BA0A087X1C1 80 aa9.99□□□□□ -0.81
C9orf3-221ENST00000489562 TEX48A0A1B0GUV7 120 aa9.99□□□□□ -0.81
C9orf3-221ENST00000489562 SNAPINO95295 136 aa9.99□□□□□ -0.81
C9orf3-221ENST00000489562 APOC3P02656 99 aa9.99□□□□□ -0.81
C9orf3-221ENST00000489562 PRM2P04554 102 aa9.99□□□□□ -0.81
C9orf3-221ENST00000489562 RHEBQ15382 184 aa9.99□□□□□ -0.81
C9orf3-221ENST00000489562 IL36BQ9NZH7 164 aa9.99□□□□□ -0.81
C9orf3-221ENST00000489562 TIMM8BQ9Y5J9 83 aaPredicted RBP9.99□□□□□ -0.81
C9orf3-221ENST00000489562 V9GYV3 84 aa9.99□□□□□ -0.81
C9orf3-221ENST00000489562 A0A1W2PPQ1 181 aa9.98□□□□□ -0.81
C9orf3-221ENST00000489562 PLAC8L1A1L4L8 177 aa9.98□□□□□ -0.81
C9orf3-221ENST00000489562 GRIFINA4D1Z8 144 aa9.98□□□□□ -0.81
C9orf3-221ENST00000489562 FAM231BA6NCW3 169 aa9.98□□□□□ -0.81
C9orf3-221ENST00000489562 OR5AL1P0C617 328 aa9.98□□□□□ -0.81
C9orf3-221ENST00000489562 DAZ2Q13117 558 aaKnown RBP9.98□□□□□ -0.81
C9orf3-221ENST00000489562 RNF212Q495C1 297 aa9.98□□□□□ -0.81
C9orf3-221ENST00000489562 CLRN3Q8NCR9 226 aa9.98□□□□□ -0.81
C9orf3-221ENST00000489562 IL17DQ8TAD2 202 aa9.98□□□□□ -0.81
C9orf3-221ENST00000489562 TSKUQ8WUA8 353 aa9.98□□□□□ -0.81
C9orf3-221ENST00000489562 C9orf85Q96MD7 179 aa9.98□□□□□ -0.81
C9orf3-221ENST00000489562 CTDSP1Q9GZU7 261 aa9.98□□□□□ -0.81
C9orf3-221ENST00000489562 GFRA4Q9GZZ7 299 aa9.98□□□□□ -0.81
C9orf3-221ENST00000489562 GSN-AS1Q9NRJ2 163 aa9.98□□□□□ -0.81
C9orf3-221ENST00000489562 MDFICQ9P1T7 246 aa9.98□□□□□ -0.81
C9orf3-221ENST00000489562 MUC4Q99102 2169 aa9.98□□□□□ -0.81
C9orf3-221ENST00000489562 LYRM9A8MSI8 78 aa9.97□□□□□ -0.81
C9orf3-221ENST00000489562 H3BVH4 76 aa9.97□□□□□ -0.81
C9orf3-221ENST00000489562 RNASE3P12724 160 aaKnown RBP9.97□□□□□ -0.81
C9orf3-221ENST00000489562 ZNF575Q86XF7 245 aa9.97□□□□□ -0.81
C9orf3-221ENST00000489562 FER1L6-AS1Q8NA97 138 aa9.97□□□□□ -0.81
C9orf3-221ENST00000489562 TENM3Q9P273 2699 aa9.96□□□□□ -0.81
C9orf3-221ENST00000489562 A0A087WWC5 75 aa9.96□□□□□ -0.82
C9orf3-221ENST00000489562 F2Z2F3 143 aa9.96□□□□□ -0.82
C9orf3-221ENST00000489562 M0R2P5 195 aa9.96□□□□□ -0.82
C9orf3-221ENST00000489562 SNAI2O43623 268 aa9.96□□□□□ -0.82
C9orf3-221ENST00000489562 ARMS2P0C7Q2 107 aa9.96□□□□□ -0.82
C9orf3-221ENST00000489562 IGLC6P0CF74 106 aa9.96□□□□□ -0.82
C9orf3-221ENST00000489562 LGALS9BQ3B8N2 356 aa9.96□□□□□ -0.82
C9orf3-221ENST00000489562 PTH2Q96A98 100 aa9.96□□□□□ -0.82
C9orf3-221ENST00000489562 NDUFAF3Q9BU61 184 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 388 ms