RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 PCLOQ9Y6V0 5065 aa6.18□□□□□ -1.42
USF1-204ENST00000472217 FXYD6-FXYD2A0A087WZ82 144 aa6.18□□□□□ -1.42
USF1-204ENST00000472217 SERTM2A0A1B0GWG4 89 aa6.18□□□□□ -1.42
USF1-204ENST00000472217 C16orf90A8MZG2 172 aa6.18□□□□□ -1.42
USF1-204ENST00000472217 GGTLC3B5MD39 225 aa6.18□□□□□ -1.42
USF1-204ENST00000472217 MBP02144 154 aa6.18□□□□□ -1.42
USF1-204ENST00000472217 TYMSP04818 313 aa6.18□□□□□ -1.42
USF1-204ENST00000472217 LINC00315P59091 139 aa6.18□□□□□ -1.42
USF1-204ENST00000472217 MRPL23Q16540 153 aaKnown RBP6.18□□□□□ -1.42
USF1-204ENST00000472217 RPL7L1Q6DKI1 246 aaKnown RBP6.18□□□□□ -1.42
USF1-204ENST00000472217 NEGR1Q7Z3B1 354 aa6.18□□□□□ -1.42
USF1-204ENST00000472217 IQCF2Q8IXL9 164 aa6.18□□□□□ -1.42
USF1-204ENST00000472217 INO80EQ8NBZ0 244 aaPredicted RBP6.18□□□□□ -1.42
USF1-204ENST00000472217 ASB13Q8WXK3 278 aa6.18□□□□□ -1.42
USF1-204ENST00000472217 SDF2L1Q9HCN8 221 aa6.18□□□□□ -1.42
USF1-204ENST00000472217 TNFSF18Q9UNG2 199 aa6.18□□□□□ -1.42
USF1-204ENST00000472217 MUC4Q99102 2169 aa6.18□□□□□ -1.42
USF1-204ENST00000472217 TRAV4A0A0B4J268 109 aa6.17□□□□□ -1.42
USF1-204ENST00000472217 K7EQD1 137 aa6.17□□□□□ -1.42
USF1-204ENST00000472217 LCE2BO14633 110 aa6.17□□□□□ -1.42
USF1-204ENST00000472217 CXorf1O96002 111 aa6.17□□□□□ -1.42
USF1-204ENST00000472217 IGLV2-11P01706 119 aa6.17□□□□□ -1.42
USF1-204ENST00000472217 GYPEP15421 78 aa6.17□□□□□ -1.42
USF1-204ENST00000472217 ZNF80P51504 273 aaPredicted RBP6.17□□□□□ -1.42
USF1-204ENST00000472217 SUMO1P63165 101 aaKnown RBP6.17□□□□□ -1.42
USF1-204ENST00000472217 LYPD5Q6UWN5 251 aa6.17□□□□□ -1.42
USF1-204ENST00000472217 KCNS1Q96KK3 526 aa6.17□□□□□ -1.42
USF1-204ENST00000472217 NDFIP1Q9BT67 221 aa6.17□□□□□ -1.42
USF1-204ENST00000472217 ACTR3CQ9C0K3 210 aaPredicted RBP6.17□□□□□ -1.42
USF1-204ENST00000472217 C11orf21Q9P2W6 132 aa6.17□□□□□ -1.42
USF1-204ENST00000472217 EPDR1Q9UM22 224 aa6.17□□□□□ -1.42
USF1-204ENST00000472217 PKHD1P08F94 4074 aa6.16□□□□□ -1.42
USF1-204ENST00000472217 BORCS7-ASMTA0A0B4J1R7 106 aa6.16□□□□□ -1.42
USF1-204ENST00000472217 G3V3Q6 166 aa6.16□□□□□ -1.42
USF1-204ENST00000472217 K7EQM0 130 aa6.16□□□□□ -1.42
USF1-204ENST00000472217 M0R2P5 195 aa6.16□□□□□ -1.42
USF1-204ENST00000472217 ORM1P02763 201 aa6.16□□□□□ -1.42
USF1-204ENST00000472217 BTF3P20290 206 aaKnown RBP6.16□□□□□ -1.42
USF1-204ENST00000472217 SRIP30626 198 aa6.16□□□□□ -1.42
USF1-204ENST00000472217 FLI1Q01543 452 aaPredicted RBP6.16□□□□□ -1.42
USF1-204ENST00000472217 ZNF726P1Q15940 193 aa6.16□□□□□ -1.42
USF1-204ENST00000472217 Q6ZRN7 208 aaPredicted RBP6.16□□□□□ -1.42
USF1-204ENST00000472217 SPATA12Q7Z6I5 190 aa6.16□□□□□ -1.42
USF1-204ENST00000472217 CYB561D1Q8N8Q1 229 aa6.16□□□□□ -1.42
USF1-204ENST00000472217 TMEM75Q8N9X5 138 aa6.16□□□□□ -1.42
USF1-204ENST00000472217 OR4C5Q8NGB2 326 aa6.16□□□□□ -1.42
USF1-204ENST00000472217 OR2T35Q8NGX2 323 aa6.16□□□□□ -1.42
USF1-204ENST00000472217 PCNPQ8WW12 178 aaKnown RBP6.16□□□□□ -1.42
USF1-204ENST00000472217 TMEM167BQ9NRX6 74 aa6.16□□□□□ -1.42
USF1-204ENST00000472217 PSG8Q9UQ74 426 aa6.16□□□□□ -1.42
USF1-204ENST00000472217 LOC100131303A0A0U1RQF7 123 aa6.15□□□□□ -1.42
USF1-204ENST00000472217 C9JCJ5 164 aa6.15□□□□□ -1.42
USF1-204ENST00000472217 CDK2AP2O75956 126 aa6.15□□□□□ -1.42
USF1-204ENST00000472217 GCGP01275 180 aa6.15□□□□□ -1.42
USF1-204ENST00000472217 PFN1P07737 140 aaKnown RBP6.15□□□□□ -1.42
USF1-204ENST00000472217 KRTAP10-2P60368 255 aa6.15□□□□□ -1.42
USF1-204ENST00000472217 PRNTQ86SH4 94 aa6.15□□□□□ -1.42
USF1-204ENST00000472217 CTXND1A0A1B0GTU2 59 aa6.14□□□□□ -1.43
USF1-204ENST00000472217 A0A1W2PRE2 83 aa6.14□□□□□ -1.43
USF1-204ENST00000472217 TAAR5O14804 337 aa6.14□□□□□ -1.43
USF1-204ENST00000472217 GATA1P15976 413 aaPredicted RBP6.14□□□□□ -1.43
USF1-204ENST00000472217 RGS21Q2M5E4 152 aa6.14□□□□□ -1.43
USF1-204ENST00000472217 ZNF876PQ49A33 203 aa6.14□□□□□ -1.43
USF1-204ENST00000472217 ZFP69Q49AA0 526 aa6.14□□□□□ -1.43
USF1-204ENST00000472217 SMUG1Q53HV7 270 aa6.14□□□□□ -1.43
USF1-204ENST00000472217 WFDC10BQ8IUB3 73 aa6.14□□□□□ -1.43
USF1-204ENST00000472217 LINC00479Q96M42 142 aa6.14□□□□□ -1.43
USF1-204ENST00000472217 C9orf85Q96MD7 179 aa6.14□□□□□ -1.43
USF1-204ENST00000472217 TXNDC17Q9BRA2 123 aa6.14□□□□□ -1.43
USF1-204ENST00000472217 KRTAP4-5Q9BYR2 181 aa6.14□□□□□ -1.43
USF1-204ENST00000472217 TNFRSF18Q9Y5U5 241 aa6.14□□□□□ -1.43
USF1-204ENST00000472217 LY96Q9Y6Y9 160 aa6.14□□□□□ -1.43
USF1-204ENST00000472217 DNAH11Q96DT5 4516 aa6.13□□□□□ -1.43
USF1-204ENST00000472217 TRAV34A0A0B4J273 112 aa6.13□□□□□ -1.43
USF1-204ENST00000472217 FBLL1A6NHQ2 334 aaKnown RBP6.13□□□□□ -1.43
USF1-204ENST00000472217 ARPC5O15511 151 aa6.13□□□□□ -1.43
USF1-204ENST00000472217 IFNA7P01567 189 aa6.13□□□□□ -1.43
USF1-204ENST00000472217 RNASE3P12724 160 aaKnown RBP6.13□□□□□ -1.43
USF1-204ENST00000472217 FGF8P55075 233 aaPredicted RBP6.13□□□□□ -1.43
USF1-204ENST00000472217 UBE2G2P60604 165 aa6.13□□□□□ -1.43
USF1-204ENST00000472217 ZNF506Q5JVG8 444 aa6.13□□□□□ -1.43
USF1-204ENST00000472217 SAPCD1Q5SSQ6 148 aa6.13□□□□□ -1.43
USF1-204ENST00000472217 CFAP126Q5VTH2 177 aa6.13□□□□□ -1.43
USF1-204ENST00000472217 DPPA3Q6W0C5 159 aa6.13□□□□□ -1.43
USF1-204ENST00000472217 NHLRC2Q8NBF2 726 aa6.13□□□□□ -1.43
USF1-204ENST00000472217 CYTL1Q9NRR1 136 aa6.13□□□□□ -1.43
USF1-204ENST00000472217 ARL2-SNX15V9GYD0 113 aa6.13□□□□□ -1.43
USF1-204ENST00000472217 TRAV9-2A0A087WT02 112 aa6.12□□□□□ -1.43
USF1-204ENST00000472217 IGHV3-73A0A0B4J1V6 119 aa6.12□□□□□ -1.43
USF1-204ENST00000472217 PGPEP1LA6NFU8 196 aa6.12□□□□□ -1.43
USF1-204ENST00000472217 FAM74A7A6NL05 159 aa6.12□□□□□ -1.43
USF1-204ENST00000472217 PEX7O00628 323 aa6.12□□□□□ -1.43
USF1-204ENST00000472217 RS1O15537 224 aa6.12□□□□□ -1.43
USF1-204ENST00000472217 DNAH10OSP0CZ25 163 aa6.12□□□□□ -1.43
USF1-204ENST00000472217 AKR1C8PQ5T2L2 129 aa6.12□□□□□ -1.43
USF1-204ENST00000472217 Q86TA4 180 aa6.12□□□□□ -1.43
USF1-204ENST00000472217 SLC25A29Q8N8R3 303 aa6.12□□□□□ -1.43
USF1-204ENST00000472217 IGKV3D-20A0A0C4DH25 116 aa6.11□□□□□ -1.43
USF1-204ENST00000472217 TRBV6-4A0A1B0GX49 114 aa6.11□□□□□ -1.43
USF1-204ENST00000472217 MAP1LC3B2A6NCE7 125 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms