RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ZNF688P0C7X2 276 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 RBMY1A1P0DJD3 496 aaKnown RBP4.14□□□□□ -1.75
SYNE1-220ENST00000471834 RBMY1CP0DJD4 496 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 SPAG8Q99932 426 aaPredicted RBP4.14□□□□□ -1.75
SYNE1-220ENST00000471834 TRAV40A0A0B4J280 105 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 A0A0U1RRA0 63 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 A8MTW9 85 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 H3BUT2 72 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 ARMS2P0C7Q2 107 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 CNTFRP26992 372 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 KNTC1P50748 2209 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 ERCC8Q13216 396 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 IGHV1-3A0A0C4DH29 117 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 IGKCP01834 107 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 CRYBA4P53673 196 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 C8orf49Q96NF6 230 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 hDV102S1A0JD36 115 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 PRR25Q96S07 402 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 TRAV8-2A0A0B4J237 113 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 IGHV3-53P01767 116 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 FXYD2P54710 66 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 C4orf48Q5BLP8 95 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 RUSC1-AS1Q66K80 236 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 ZC2HC1AQ96GY0 325 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 OOSP1A8MZH6 123 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 SMKR1H3BMG3 65 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 CD28P10747 220 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 NRACQ8N912 160 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 NPBQ8NG41 125 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 SPCS1Q9Y6A9 102 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 ZNRD1Q9P1U0 126 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 IGLV11-55A0A075B6I3 123 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 ADARB2-AS1A8MUL3 147 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 ORMDL3Q8N138 153 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 KLHL30-AS1Q8NEE0 82 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 FANCD2OSQ96PS1 177 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 C21orf62Q9NYP8 219 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 FAM215AQ9Y5M1 114 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 ODF3BA8MYP8 253 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.13□□□□□ -1.75
SYNE1-220ENST00000471834 Q8N8P6 123 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 SPANXDQ9BXN6 97 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 C1QTNF4Q9BXJ3 329 aa4.13□□□□□ -1.75
SYNE1-220ENST00000471834 RAI1Q7Z5J4 1906 aaPredicted RBP4.12□□□□□ -1.75
SYNE1-220ENST00000471834 TRBV6-5A0A0K0K1A5 114 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.12□□□□□ -1.75
SYNE1-220ENST00000471834 GAGE12HA6NDE8 117 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 C17orf100A8MU93 164 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 FHL3Q13643 280 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 NAA38Q9BRA0 125 aaKnown RBP4.12□□□□□ -1.75
SYNE1-220ENST00000471834 OTOGLQ3ZCN5 2332 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 CFHR3Q02985 330 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 FBXL19-AS1Q494R0 122 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 VCX2Q9H322 139 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 NHP2Q9NX24 153 aaKnown RBP4.12□□□□□ -1.75
SYNE1-220ENST00000471834 J3QLI3 93 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 SH2D1AO60880 128 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 PSG8Q9UQ74 426 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 PI4KAP42356 2102 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 IGHV1-46P01743 117 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 LAGE3Q14657 143 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 LINC00477Q96M19 166 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 CEP295Q9C0D2 2601 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 A0A0G2JNJ9 132 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 NPIPB5A8MRT5 1133 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 DPM2O94777 84 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 PRTN3P24158 256 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 DUX4L9Q6RFH8 374 aaPredicted RBP4.12□□□□□ -1.75
SYNE1-220ENST00000471834 MAPK1IP1LQ8NDC0 245 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 C20orf78Q9BR46 151 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 Q9UFV3 132 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 D6R8Y8 96 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 MLANAQ16655 118 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 OR11H6Q8NGC7 330 aa4.12□□□□□ -1.75
SYNE1-220ENST00000471834 TEN1Q86WV5 123 aa4.11□□□□□ -1.75
SYNE1-220ENST00000471834 NEXN-AS1Q8NBZ9 246 aa4.11□□□□□ -1.75
SYNE1-220ENST00000471834 DPM3Q9P2X0 92 aa4.11□□□□□ -1.75
SYNE1-220ENST00000471834 INTS1Q8N201 2190 aaKnown RBP4.11□□□□□ -1.75
SYNE1-220ENST00000471834 TRGV4A0A0C4DH28 118 aa4.11□□□□□ -1.75
SYNE1-220ENST00000471834 ATP5LO75964 103 aa4.11□□□□□ -1.75
SYNE1-220ENST00000471834 NPYP01303 97 aa4.11□□□□□ -1.75
SYNE1-220ENST00000471834 SIGLEC9Q9Y336 463 aa4.11□□□□□ -1.75
SYNE1-220ENST00000471834 A0A087WX48 190 aa4.11□□□□□ -1.75
SYNE1-220ENST00000471834 LYPD2Q6UXB3 125 aa4.11□□□□□ -1.75
SYNE1-220ENST00000471834 RNF182Q8N6D2 247 aa4.11□□□□□ -1.75
SYNE1-220ENST00000471834 PRR30Q53SZ7 412 aaPredicted RBP4.11□□□□□ -1.75
SYNE1-220ENST00000471834 ANAPC13Q9BS18 74 aa4.11□□□□□ -1.75
SYNE1-220ENST00000471834 POLR2KP53803 58 aaKnown RBP4.11□□□□□ -1.75
SYNE1-220ENST00000471834 SPRNQ5BIV9 151 aa4.11□□□□□ -1.75
SYNE1-220ENST00000471834 SAMD5Q5TGI4 173 aa4.11□□□□□ -1.75
SYNE1-220ENST00000471834 NFE4Q86UQ8 179 aa4.11□□□□□ -1.75
SYNE1-220ENST00000471834 DSCAML1Q8TD84 2053 aa4.11□□□□□ -1.75
SYNE1-220ENST00000471834 ESPL1Q14674 2120 aa4.11□□□□□ -1.75
SYNE1-220ENST00000471834 PLA2G2AP14555 144 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 BRD3OSQ6XYD6 125 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 RNF125Q96EQ8 232 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 CHAC1Q9BUX1 264 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 H7C1H1 209 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 EIF4EBP3O60516 100 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-220ENST00000471834 IFI27P40305 119 aaPredicted RBP4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms