RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 IGKV2D-26A0A0A0MRZ7 120 aa7.42□□□□□ -1.22
HDAC3-205ENST00000469550 BUB1B-PAK6H3BSN5 160 aa7.42□□□□□ -1.22
HDAC3-205ENST00000469550 IL4P05112 153 aa7.42□□□□□ -1.22
HDAC3-205ENST00000469550 EGR2P11161 476 aaPredicted RBP7.42□□□□□ -1.22
HDAC3-205ENST00000469550 AZU1P20160 251 aa7.42□□□□□ -1.22
HDAC3-205ENST00000469550 TWIST1Q15672 202 aa7.42□□□□□ -1.22
HDAC3-205ENST00000469550 RNF185Q96GF1 192 aa7.42□□□□□ -1.22
HDAC3-205ENST00000469550 ASCL2Q99929 193 aa7.42□□□□□ -1.22
HDAC3-205ENST00000469550 SPATA25Q9BR10 227 aa7.42□□□□□ -1.22
HDAC3-205ENST00000469550 TMSB15BA0A087X1C1 80 aa7.42□□□□□ -1.22
HDAC3-205ENST00000469550 A0A1W2PRD5 423 aa7.42□□□□□ -1.22
HDAC3-205ENST00000469550 A0A1W2PRF3 423 aa7.42□□□□□ -1.22
HDAC3-205ENST00000469550 A0A1W2PRM7 423 aa7.42□□□□□ -1.22
HDAC3-205ENST00000469550 GAGE12HA6NDE8 117 aa7.42□□□□□ -1.22
HDAC3-205ENST00000469550 DPM2O94777 84 aa7.42□□□□□ -1.22
HDAC3-205ENST00000469550 LEPP41159 167 aa7.42□□□□□ -1.22
HDAC3-205ENST00000469550 FXYD7P58549 80 aa7.42□□□□□ -1.22
HDAC3-205ENST00000469550 KLF17Q5JT82 389 aaPredicted RBP7.42□□□□□ -1.22
HDAC3-205ENST00000469550 SPANXB1Q9NS25 103 aaPredicted RBP7.42□□□□□ -1.22
HDAC3-205ENST00000469550 SELENOKQ9Y6D0 94 aa7.42□□□□□ -1.22
HDAC3-205ENST00000469550 PRSS47A8MTI9 375 aa7.41□□□□□ -1.22
HDAC3-205ENST00000469550 IGLL5B9A064 214 aa7.41□□□□□ -1.22
HDAC3-205ENST00000469550 LINC01619G3V211 115 aa7.41□□□□□ -1.22
HDAC3-205ENST00000469550 SMKR1H3BMG3 65 aa7.41□□□□□ -1.22
HDAC3-205ENST00000469550 GNG7O60262 68 aa7.41□□□□□ -1.22
HDAC3-205ENST00000469550 PRSS1P07477 247 aa7.41□□□□□ -1.22
HDAC3-205ENST00000469550 TCTAP57738 103 aa7.41□□□□□ -1.22
HDAC3-205ENST00000469550 ZNF575Q86XF7 245 aa7.41□□□□□ -1.22
HDAC3-205ENST00000469550 CCL17Q92583 94 aa7.41□□□□□ -1.22
HDAC3-205ENST00000469550 FBXL15Q9H469 300 aa7.41□□□□□ -1.22
HDAC3-205ENST00000469550 DYNLRB1Q9NP97 96 aa7.41□□□□□ -1.22
HDAC3-205ENST00000469550 TNFRSF6BO95407 300 aa7.4□□□□□ -1.22
HDAC3-205ENST00000469550 RPL7P18124 248 aaKnown RBP7.4□□□□□ -1.22
HDAC3-205ENST00000469550 Q8N8P6 123 aa7.4□□□□□ -1.22
HDAC3-205ENST00000469550 A0A1B0GV72 72 aa7.4□□□□□ -1.23
HDAC3-205ENST00000469550 B4DSR2 109 aa7.4□□□□□ -1.23
HDAC3-205ENST00000469550 PLXNB1O43157 2135 aa7.4□□□□□ -1.23
HDAC3-205ENST00000469550 TM4SF20Q53R12 229 aa7.4□□□□□ -1.23
HDAC3-205ENST00000469550 ZNF502Q8TBZ5 544 aa7.4□□□□□ -1.23
HDAC3-205ENST00000469550 C18orf15Q96N68 181 aa7.4□□□□□ -1.23
HDAC3-205ENST00000469550 NHP2Q9NX24 153 aaKnown RBP7.4□□□□□ -1.23
HDAC3-205ENST00000469550 IGLV2-18A0A075B6J9 118 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 NPIPB5A8MRT5 1133 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 LY6LH3BQJ8 138 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 ZC2HC1BQ5TFG8 222 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 WFDC3Q8IUB2 231 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 ZNF479Q96JC4 524 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 ATP6V0BQ99437 205 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 GTSF1LQ9H1H1 148 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 TSSC4Q9Y5U2 329 aaPredicted RBP7.39□□□□□ -1.23
HDAC3-205ENST00000469550 A0A1B0GWB2 263 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 FABP5P3A8MUU1 101 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 K7ERJ3 54 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 CNIH1O95406 144 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 ZNF80P51504 273 aaPredicted RBP7.39□□□□□ -1.23
HDAC3-205ENST00000469550 MFAP4P55083 255 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 WFDC2Q14508 124 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 C12orf74Q32Q52 190 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 GTSCR1Q86UQ5 136 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 ARPC1AQ92747 370 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 RPEQ96AT9 228 aa7.39□□□□□ -1.23
HDAC3-205ENST00000469550 IGKV2-40A0A087WW87 121 aaPredicted RBP7.38□□□□□ -1.23
HDAC3-205ENST00000469550 IGKV2D-40P01614 121 aaPredicted RBP7.38□□□□□ -1.23
HDAC3-205ENST00000469550 SMAGPQ0VAQ4 97 aa7.38□□□□□ -1.23
HDAC3-205ENST00000469550 SCGB2A2Q13296 93 aa7.38□□□□□ -1.23
HDAC3-205ENST00000469550 TTC9CQ8N5M4 171 aa7.38□□□□□ -1.23
HDAC3-205ENST00000469550 TEX29Q8N6K0 151 aa7.38□□□□□ -1.23
HDAC3-205ENST00000469550 IGLV11-55A0A075B6I3 123 aa7.37□□□□□ -1.23
HDAC3-205ENST00000469550 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.37□□□□□ -1.23
HDAC3-205ENST00000469550 NPBQ8NG41 125 aa7.37□□□□□ -1.23
HDAC3-205ENST00000469550 MYOZ3Q8TDC0 251 aa7.37□□□□□ -1.23
HDAC3-205ENST00000469550 SPAG8Q99932 426 aaPredicted RBP7.37□□□□□ -1.23
HDAC3-205ENST00000469550 TTTY13Q9BZ97 58 aa7.37□□□□□ -1.23
HDAC3-205ENST00000469550 MSRB1Q9NZV6 116 aa7.37□□□□□ -1.23
HDAC3-205ENST00000469550 PRO0461Q9UI25 63 aa7.37□□□□□ -1.23
HDAC3-205ENST00000469550 A0A087WX48 190 aa7.37□□□□□ -1.23
HDAC3-205ENST00000469550 LYNX1G3V0Z9 82 aa7.37□□□□□ -1.23
HDAC3-205ENST00000469550 NDUFA3O95167 84 aa7.37□□□□□ -1.23
HDAC3-205ENST00000469550 IGHG4P01861 327 aa7.37□□□□□ -1.23
HDAC3-205ENST00000469550 MSMBP08118 114 aa7.37□□□□□ -1.23
HDAC3-205ENST00000469550 LYNX1P0DP58 116 aa7.37□□□□□ -1.23
HDAC3-205ENST00000469550 PLNP26678 52 aa7.37□□□□□ -1.23
HDAC3-205ENST00000469550 RRN3P1Q2M238 152 aa7.37□□□□□ -1.23
HDAC3-205ENST00000469550 GAGE13Q4V321 117 aa7.37□□□□□ -1.23
HDAC3-205ENST00000469550 TCTEX1D4Q5JR98 221 aa7.37□□□□□ -1.23
HDAC3-205ENST00000469550 SVIPQ8NHG7 77 aa7.37□□□□□ -1.23
HDAC3-205ENST00000469550 NBEAL1Q6ZS30 2694 aa7.36□□□□□ -1.23
HDAC3-205ENST00000469550 TRBV7-3A0A075B6L6 115 aa7.36□□□□□ -1.23
HDAC3-205ENST00000469550 TRAV12-1A0A0B4J245 112 aa7.36□□□□□ -1.23
HDAC3-205ENST00000469550 TRAV40A0A0B4J280 105 aa7.36□□□□□ -1.23
HDAC3-205ENST00000469550 RBAKDNA6NC62 111 aa7.36□□□□□ -1.23
HDAC3-205ENST00000469550 F8W735 103 aaPredicted RBP7.36□□□□□ -1.23
HDAC3-205ENST00000469550 NBR2O15453 112 aa7.36□□□□□ -1.23
HDAC3-205ENST00000469550 SCGB2A1O75556 95 aa7.36□□□□□ -1.23
HDAC3-205ENST00000469550 GAS8-AS1O95177 125 aa7.36□□□□□ -1.23
HDAC3-205ENST00000469550 ORM1P02763 201 aa7.36□□□□□ -1.23
HDAC3-205ENST00000469550 LMO4P61968 165 aa7.36□□□□□ -1.23
HDAC3-205ENST00000469550 LAGE3Q14657 143 aa7.36□□□□□ -1.23
HDAC3-205ENST00000469550 MAPKAPK5-AS1Q8N8E1 139 aa7.36□□□□□ -1.23
HDAC3-205ENST00000469550 FANCD2OSQ96PS1 177 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms