RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 RHOHQ15669 191 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 UBE2SQ16763 222 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 KRTAP5-2Q701N4 177 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 C14orf178Q8N769 122 aaPredicted RBP3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 Q8N814 137 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 Q96M85 177 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 SLC50A1Q9BRV3 221 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 MRPL35Q9NZE8 188 aaKnown RBP3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 LINC00474Q9P2X8 69 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 U3KQK5 164 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 ANK1P16157 1881 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 KIF26AQ9ULI4 1882 aaPredicted RBP3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 KIF14Q15058 1648 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 PPRC1Q5VV67 1664 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 OBSL1O75147 1896 aa3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 DIP2CQ9Y2E4 1556 aa3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 EDC4Q6P2E9 1401 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 TRAV2A0A0B4J234 112 aa3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 B4DSR2 109 aa3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 MPV17P39210 176 aa3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 SPANXN1Q5VSR9 72 aa3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 C2orf91Q6ZV80 131 aa3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 C1orf64Q8NEQ6 169 aa3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 MUC7Q8TAX7 377 aa3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 ODF3Q96PU9 254 aa3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 DEFB126Q9BYW3 111 aa3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 NXT2Q9NPJ8 142 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 NHP2Q9NX24 153 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 ZNF222Q9UK12 451 aa3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 TICRRQ7Z2Z1 1910 aa3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 RPRD2Q5VT52 1461 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 DSCAMO60469 2012 aa3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 URB2Q14146 1524 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 CLASP1Q7Z460 1538 aa3.14□□□□□ -1.91
CCDC88A-210ENST00000468534 HELZP42694 1942 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 LAMB4A4D0S4 1761 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 PIGBOS1A0A0B4J2F0 54 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 hDV103S1A0JD37 113 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 NAP1L6A6NFF2 107 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 RTL8CO15255 209 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 IGHV4-34P06331 123 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 RNASE2P10153 161 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 ROMO1P60602 79 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 MPV17LQ2QL34 196 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 HIGD2BQ4VC39 106 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 S100A7L2Q5SY68 101 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 CFAP126Q5VTH2 177 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 LINC00269Q8N2A0 174 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 FAM19A2Q8N3H0 131 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 MIR7-3HGQ8N6C7 128 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 TMEM141Q96I45 108 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 CYSTM1Q9H1C7 97 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 LINC00574Q9H8X3 128 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 HIGD1BQ9P298 99 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 NDUFA12Q9UI09 145 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 ICOSQ9Y6W8 199 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 PLA2R1Q13018 1463 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 IQSEC2Q5JU85 1478 aa3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 CDK12Q9NYV4 1490 aaPredicted RBP3.13□□□□□ -1.91
CCDC88A-210ENST00000468534 MCM3APO60318 1980 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 HCFC1P51610 2035 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 TOPAZ1Q8N9V7 1692 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 IGKV2D-26A0A0A0MRZ7 120 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 LOC107984156A0A0G2JMH3 177 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 IGHV3-64DA0A0J9YX35 117 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 UMAD1C9J7I0 102 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 C17orf112F2Z3M2 114 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 CLPSP04118 112 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 GIG44P09565 113 aaPredicted RBP3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 GNG11P61952 73 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 ZNF816Q0VGE8 651 aaPredicted RBP3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 IL17AQ16552 155 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 Q1RN00 199 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 ESRGQ1W209 222 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 ARL17AQ8IVW1 177 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 LINC01560Q8TB33 94 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 DYNLRB2Q8TF09 96 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 C16orf74Q96GX8 76 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 SMIM7Q9BQ49 75 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 ZNRD1Q9P1U0 126 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 PEAK1Q9H792 1746 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 ABCC1P33527 1531 aa3.12□□□□□ -1.91
CCDC88A-210ENST00000468534 LRRC9Q6ZRR7 1453 aa3.11□□□□□ -1.91
CCDC88A-210ENST00000468534 MYO5CQ9NQX4 1742 aa3.11□□□□□ -1.91
CCDC88A-210ENST00000468534 IGKV1OR2-108A0A075B7D4 117 aa3.11□□□□□ -1.91
CCDC88A-210ENST00000468534 A8MUU9 505 aa3.11□□□□□ -1.91
CCDC88A-210ENST00000468534 C17orf98A8MV24 154 aa3.11□□□□□ -1.91
CCDC88A-210ENST00000468534 NDUFC1O43677 76 aa3.11□□□□□ -1.91
CCDC88A-210ENST00000468534 ASAH2BP0C7U1 165 aa3.11□□□□□ -1.91
CCDC88A-210ENST00000468534 SMIM13P0DJ93 91 aa3.11□□□□□ -1.91
CCDC88A-210ENST00000468534 CXCL8P10145 99 aa3.11□□□□□ -1.91
CCDC88A-210ENST00000468534 FXYD2P54710 66 aa3.11□□□□□ -1.91
CCDC88A-210ENST00000468534 SNRPFP62306 86 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-210ENST00000468534 FAM229BQ4G0N7 80 aa3.11□□□□□ -1.91
CCDC88A-210ENST00000468534 C1orf134Q5TEV5 83 aa3.11□□□□□ -1.91
CCDC88A-210ENST00000468534 LYZL1Q6UWQ5 148 aa3.11□□□□□ -1.91
CCDC88A-210ENST00000468534 TMEM136Q6ZRR5 245 aa3.11□□□□□ -1.91
CCDC88A-210ENST00000468534 LYZL2Q7Z4W2 148 aa3.11□□□□□ -1.91
CCDC88A-210ENST00000468534 TRAPPC1Q9Y5R8 145 aa3.11□□□□□ -1.91
CCDC88A-210ENST00000468534 PLXNA4Q9HCM2 1894 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms