RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 NDFIP1Q9BT67 221 aa6.72□□□□□ -1.33
USP40-203ENST00000427112 C11orf21Q9P2W6 132 aa6.72□□□□□ -1.33
USP40-203ENST00000427112 SMAD5-AS1Q9Y6J3 95 aa6.72□□□□□ -1.33
USP40-203ENST00000427112 IGHV3-64A0A075B6Q5 118 aa6.72□□□□□ -1.33
USP40-203ENST00000427112 ATP6V0E1O15342 81 aa6.72□□□□□ -1.33
USP40-203ENST00000427112 EDN2P20800 178 aa6.72□□□□□ -1.33
USP40-203ENST00000427112 CD300EQ496F6 205 aaPredicted RBP6.72□□□□□ -1.33
USP40-203ENST00000427112 C10orf126Q8N4M7 172 aa6.72□□□□□ -1.33
USP40-203ENST00000427112 MRAP2Q96G30 205 aa6.72□□□□□ -1.33
USP40-203ENST00000427112 ZNF256Q9Y2P7 627 aaPredicted RBP6.72□□□□□ -1.33
USP40-203ENST00000427112 TRBV12-3P01733 135 aa6.71□□□□□ -1.33
USP40-203ENST00000427112 COX8AP10176 69 aa6.71□□□□□ -1.33
USP40-203ENST00000427112 WFDC2Q14508 124 aa6.71□□□□□ -1.33
USP40-203ENST00000427112 ASCL5Q7RTU5 278 aa6.71□□□□□ -1.33
USP40-203ENST00000427112 MAPK1IP1LQ8NDC0 245 aa6.71□□□□□ -1.33
USP40-203ENST00000427112 LINC00574Q9H8X3 128 aa6.71□□□□□ -1.33
USP40-203ENST00000427112 A0A1W2PPR1 153 aa6.71□□□□□ -1.34
USP40-203ENST00000427112 B9A039 149 aa6.71□□□□□ -1.34
USP40-203ENST00000427112 CEACAM4O75871 244 aa6.71□□□□□ -1.34
USP40-203ENST00000427112 TSPAN13O95857 204 aa6.71□□□□□ -1.34
USP40-203ENST00000427112 HBDP02042 147 aa6.71□□□□□ -1.34
USP40-203ENST00000427112 CTSGP08311 255 aa6.71□□□□□ -1.34
USP40-203ENST00000427112 S100A4P26447 101 aaKnown RBP6.71□□□□□ -1.34
USP40-203ENST00000427112 PPBPP02775 128 aa6.71□□□□□ -1.34
USP40-203ENST00000427112 CRYGBP07316 175 aa6.71□□□□□ -1.34
USP40-203ENST00000427112 LINC01545Q5VT33 79 aa6.71□□□□□ -1.34
USP40-203ENST00000427112 PIMREGQ9BSJ6 248 aa6.71□□□□□ -1.34
USP40-203ENST00000427112 TMEM8BA6NDV4 472 aa6.7□□□□□ -1.34
USP40-203ENST00000427112 SIVA1O15304 175 aa6.7□□□□□ -1.34
USP40-203ENST00000427112 TNFRSF6BO95407 300 aa6.7□□□□□ -1.34
USP40-203ENST00000427112 RASL11AQ6T310 242 aa6.7□□□□□ -1.34
USP40-203ENST00000427112 C14orf178Q8N769 122 aaPredicted RBP6.7□□□□□ -1.34
USP40-203ENST00000427112 OR5A1Q8NGJ0 315 aa6.7□□□□□ -1.34
USP40-203ENST00000427112 TIMD4Q96H15 378 aa6.7□□□□□ -1.34
USP40-203ENST00000427112 MRPL35Q9NZE8 188 aaKnown RBP6.7□□□□□ -1.34
USP40-203ENST00000427112 ZNF492Q9P255 531 aa6.7□□□□□ -1.34
USP40-203ENST00000427112 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.7□□□□□ -1.34
USP40-203ENST00000427112 PRSS2P07478 247 aa6.7□□□□□ -1.34
USP40-203ENST00000427112 TCF15Q12870 199 aa6.7□□□□□ -1.34
USP40-203ENST00000427112 FAM74A4Q5TZK3 123 aa6.7□□□□□ -1.34
USP40-203ENST00000427112 SHISA2Q6UWI4 295 aa6.7□□□□□ -1.34
USP40-203ENST00000427112 SVIPQ8NHG7 77 aa6.7□□□□□ -1.34
USP40-203ENST00000427112 RNF183Q96D59 192 aa6.7□□□□□ -1.34
USP40-203ENST00000427112 ZNF462Q96JM2 2506 aa6.7□□□□□ -1.34
USP40-203ENST00000427112 ANKRD17O75179 2603 aaKnown RBP6.7□□□□□ -1.34
USP40-203ENST00000427112 DTX2Q86UW9 622 aa6.7□□□□□ -1.34
USP40-203ENST00000427112 RPL39LQ96EH5 51 aaKnown RBP6.7□□□□□ -1.34
USP40-203ENST00000427112 JPT2Q9H910 190 aa6.7□□□□□ -1.34
USP40-203ENST00000427112 HIVEP2P31629 2446 aa6.69□□□□□ -1.34
USP40-203ENST00000427112 CHD6Q8TD26 2715 aa6.69□□□□□ -1.34
USP40-203ENST00000427112 F8W735 103 aaPredicted RBP6.69□□□□□ -1.34
USP40-203ENST00000427112 IGFL3Q6UXB1 125 aa6.69□□□□□ -1.34
USP40-203ENST00000427112 C16orf92Q96LL3 132 aa6.69□□□□□ -1.34
USP40-203ENST00000427112 DUX5Q96PT3 197 aa6.69□□□□□ -1.34
USP40-203ENST00000427112 AGPAT4-IT1Q9H0P7 198 aa6.69□□□□□ -1.34
USP40-203ENST00000427112 F5H697 171 aa6.69□□□□□ -1.34
USP40-203ENST00000427112 HOXB4P17483 251 aaPredicted RBP6.69□□□□□ -1.34
USP40-203ENST00000427112 ATP5IP56385 69 aaPredicted RBP6.69□□□□□ -1.34
USP40-203ENST00000427112 LINC00311Q8N616 119 aa6.69□□□□□ -1.34
USP40-203ENST00000427112 MAPKAPK5-AS1Q8N8E1 139 aa6.69□□□□□ -1.34
USP40-203ENST00000427112 MAP1LC3AQ9H492 121 aa6.69□□□□□ -1.34
USP40-203ENST00000427112 TNFRSF13BO14836 293 aaPredicted RBP6.68□□□□□ -1.34
USP40-203ENST00000427112 SMAD7O15105 426 aaKnown RBP6.68□□□□□ -1.34
USP40-203ENST00000427112 SEC11AP67812 179 aa6.68□□□□□ -1.34
USP40-203ENST00000427112 NRGNQ92686 78 aa6.68□□□□□ -1.34
USP40-203ENST00000427112 SPAG8Q99932 426 aaPredicted RBP6.68□□□□□ -1.34
USP40-203ENST00000427112 RNASE4P34096 147 aaKnown RBP6.68□□□□□ -1.34
USP40-203ENST00000427112 SAA4P35542 130 aa6.68□□□□□ -1.34
USP40-203ENST00000427112 RAB1BQ9H0U4 201 aa6.68□□□□□ -1.34
USP40-203ENST00000427112 TEX15Q9BXT5 2789 aa6.68□□□□□ -1.34
USP40-203ENST00000427112 A0A087WWL8 130 aa6.68□□□□□ -1.34
USP40-203ENST00000427112 IGHV7-81A0A0B4J1V7 117 aa6.68□□□□□ -1.34
USP40-203ENST00000427112 VKORC1Q9BQB6 163 aa6.68□□□□□ -1.34
USP40-203ENST00000427112 BPESC1Q9GZL8 116 aa6.68□□□□□ -1.34
USP40-203ENST00000427112 NPIPB6E9PJ23 425 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 OVOL3O00110 214 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 GNRH2O43555 120 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 IGHG4P01861 327 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 PRM2P04554 102 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 SMIM17P0DL12 118 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 GAGE5Q13069 117 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 GAGE6Q13070 117 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 PRR9Q5T870 116 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 TTC9CQ8N5M4 171 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 KLHL30-AS1Q8NEE0 82 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 IGKV3D-20A0A0C4DH25 116 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 FABP5P3A8MUU1 101 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 ID1P41134 155 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 TMEM78Q5T7P6 136 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 PVRIGQ6DKI7 326 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 UNQ9165/PRO28630Q6UXU0 137 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 Q6ZS46 218 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 CITED2Q99967 270 aaPredicted RBP6.67□□□□□ -1.34
USP40-203ENST00000427112 NBEAL2Q6ZNJ1 2754 aa6.67□□□□□ -1.34
USP40-203ENST00000427112 MXRA5Q9NR99 2828 aa6.66□□□□□ -1.34
USP40-203ENST00000427112 IGLV11-55A0A075B6I3 123 aa6.66□□□□□ -1.34
USP40-203ENST00000427112 IGHV3-73A0A0B4J1V6 119 aa6.66□□□□□ -1.34
USP40-203ENST00000427112 FGF6P10767 208 aa6.66□□□□□ -1.34
USP40-203ENST00000427112 GFRA4Q9GZZ7 299 aa6.66□□□□□ -1.34
USP40-203ENST00000427112 YAE1D1Q9NRH1 226 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms