RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 SPATA12Q7Z6I5 190 aa15.57■□□□□ 0.08
SHANK1-203ENST00000391813 UBL5Q9BZL1 73 aa15.56■□□□□ 0.08
SHANK1-203ENST00000391813 C2orf70A6NJV1 201 aa15.56■□□□□ 0.08
SHANK1-203ENST00000391813 NOTCH2Q04721 2471 aa15.56■□□□□ 0.08
SHANK1-203ENST00000391813 COL8A2P25067 703 aa15.56■□□□□ 0.08
SHANK1-203ENST00000391813 KRTAP27-1Q3LI81 207 aa15.56■□□□□ 0.08
SHANK1-203ENST00000391813 CMC4P56277 68 aaPredicted RBP15.56■□□□□ 0.08
SHANK1-203ENST00000391813 EGR2P11161 476 aaPredicted RBP15.55■□□□□ 0.08
SHANK1-203ENST00000391813 FOXI1Q12951 378 aa15.55■□□□□ 0.08
SHANK1-203ENST00000391813 MSMBP08118 114 aa15.55■□□□□ 0.08
SHANK1-203ENST00000391813 C8orf31Q8N9H6 132 aa15.55■□□□□ 0.08
SHANK1-203ENST00000391813 C2orf16Q68DN1 1984 aa15.55■□□□□ 0.08
SHANK1-203ENST00000391813 IGLV1-44P01699 117 aa15.55■□□□□ 0.08
SHANK1-203ENST00000391813 CRYBA4P53673 196 aa15.55■□□□□ 0.08
SHANK1-203ENST00000391813 ATP6V0E2Q8NHE4 81 aa15.55■□□□□ 0.08
SHANK1-203ENST00000391813 LENEPQ9Y5L5 61 aa15.55■□□□□ 0.08
SHANK1-203ENST00000391813 LOXP28300 417 aaPredicted RBP15.54■□□□□ 0.08
SHANK1-203ENST00000391813 TPSG1Q9NRR2 321 aa15.54■□□□□ 0.08
SHANK1-203ENST00000391813 GP9P14770 177 aa15.54■□□□□ 0.08
SHANK1-203ENST00000391813 FAM167A-AS1Q96KT0 104 aa15.54■□□□□ 0.08
SHANK1-203ENST00000391813 ANXA2RQ3ZCQ2 193 aa15.54■□□□□ 0.08
SHANK1-203ENST00000391813 TMEM219Q86XT9 240 aa15.54■□□□□ 0.08
SHANK1-203ENST00000391813 FGF23Q9GZV9 251 aaPredicted RBP15.53■□□□□ 0.08
SHANK1-203ENST00000391813 ARFGEF3Q5TH69 2177 aa15.53■□□□□ 0.08
SHANK1-203ENST00000391813 IGLV3-9A0A075B6K5 115 aa15.53■□□□□ 0.08
SHANK1-203ENST00000391813 TRAV26-1A0A087WT03 109 aa15.52■□□□□ 0.08
SHANK1-203ENST00000391813 RBAKDNA6NC62 111 aa15.52■□□□□ 0.08
SHANK1-203ENST00000391813 TMEM126AQ9H061 195 aa15.52■□□□□ 0.08
SHANK1-203ENST00000391813 TRGV1A0A0A0MS02 117 aa15.52■□□□□ 0.07
SHANK1-203ENST00000391813 GTSF1Q8WW33 167 aa15.52■□□□□ 0.07
SHANK1-203ENST00000391813 RNF223E7ERA6 249 aa15.52■□□□□ 0.07
SHANK1-203ENST00000391813 DKK1O94907 266 aa15.51■□□□□ 0.07
SHANK1-203ENST00000391813 RBX1P62877 108 aa15.51■□□□□ 0.07
SHANK1-203ENST00000391813 MRPL53Q96EL3 112 aaKnown RBP15.51■□□□□ 0.07
SHANK1-203ENST00000391813 RHOHQ15669 191 aa15.51■□□□□ 0.07
SHANK1-203ENST00000391813 TRAV13-2A0A0B4J235 113 aa15.51■□□□□ 0.07
SHANK1-203ENST00000391813 H3BUX3 64 aa15.51■□□□□ 0.07
SHANK1-203ENST00000391813 INSP01308 110 aa15.5■□□□□ 0.07
SHANK1-203ENST00000391813 J3QLI3 93 aa15.5■□□□□ 0.07
SHANK1-203ENST00000391813 FRMD6-AS1P0C7T7 363 aa15.5■□□□□ 0.07
SHANK1-203ENST00000391813 GTF3C1Q12789 2109 aa15.5■□□□□ 0.07
SHANK1-203ENST00000391813 PATE2Q6UY27 113 aa15.5■□□□□ 0.07
SHANK1-203ENST00000391813 DUX4L9Q6RFH8 374 aaPredicted RBP15.5■□□□□ 0.07
SHANK1-203ENST00000391813 OVOL3O00110 214 aa15.49■□□□□ 0.07
SHANK1-203ENST00000391813 C11orf53Q8IXP5 236 aa15.49■□□□□ 0.07
SHANK1-203ENST00000391813 C17orf77Q96MU5 243 aa15.49■□□□□ 0.07
SHANK1-203ENST00000391813 IGHV1OR15-1A0A075B7D0 117 aa15.48■□□□□ 0.07
SHANK1-203ENST00000391813 ATP6V0E1O15342 81 aa15.48■□□□□ 0.07
SHANK1-203ENST00000391813 MALRD1Q5VYJ5 2156 aa15.48■□□□□ 0.07
SHANK1-203ENST00000391813 TRAV12-1A0A0B4J245 112 aa15.48■□□□□ 0.07
SHANK1-203ENST00000391813 A0A1W2PRX2 142 aa15.48■□□□□ 0.07
SHANK1-203ENST00000391813 TCTEX1D4Q5JR98 221 aa15.48■□□□□ 0.07
SHANK1-203ENST00000391813 LY6HO94772 140 aa15.48■□□□□ 0.07
SHANK1-203ENST00000391813 Q96MF0 132 aa15.47■□□□□ 0.07
SHANK1-203ENST00000391813 KAAG1Q9UBP8 84 aa15.47■□□□□ 0.07
SHANK1-203ENST00000391813 EML6Q6ZMW3 1958 aa15.47■□□□□ 0.07
SHANK1-203ENST00000391813 CTRLP40313 264 aa15.47■□□□□ 0.07
SHANK1-203ENST00000391813 AGPAT4-IT1Q9H0P7 198 aa15.47■□□□□ 0.07
SHANK1-203ENST00000391813 NDUFA4O00483 81 aa15.46■□□□□ 0.07
SHANK1-203ENST00000391813 INS-IGF2F8WCM5 200 aa15.46■□□□□ 0.07
SHANK1-203ENST00000391813 CR1LQ2VPA4 569 aa15.46■□□□□ 0.07
SHANK1-203ENST00000391813 LINC01620Q4KN68 170 aa15.46■□□□□ 0.07
SHANK1-203ENST00000391813 SAA4P35542 130 aa15.46■□□□□ 0.07
SHANK1-203ENST00000391813 UBE2E1P51965 193 aa15.46■□□□□ 0.07
SHANK1-203ENST00000391813 A0A1W2PNU3 283 aaPredicted RBP15.45■□□□□ 0.06
SHANK1-203ENST00000391813 KIF26AQ9ULI4 1882 aaPredicted RBP15.45■□□□□ 0.06
SHANK1-203ENST00000391813 TRBV6-1A0A0K0K1D8 114 aa15.45■□□□□ 0.06
SHANK1-203ENST00000391813 A0A1B0GXF2 115 aa15.45■□□□□ 0.06
SHANK1-203ENST00000391813 PRSS47A8MTI9 375 aa15.45■□□□□ 0.06
SHANK1-203ENST00000391813 BRD3OSQ6XYD6 125 aa15.45■□□□□ 0.06
SHANK1-203ENST00000391813 DYNAPQ8N1N2 210 aa15.45■□□□□ 0.06
SHANK1-203ENST00000391813 HERVK_113P63121 156 aa15.44■□□□□ 0.06
SHANK1-203ENST00000391813 RNF114Q9Y508 228 aa15.44■□□□□ 0.06
SHANK1-203ENST00000391813 IGLV2-14P01704 120 aa15.44■□□□□ 0.06
SHANK1-203ENST00000391813 GATA1P15976 413 aaPredicted RBP15.44■□□□□ 0.06
SHANK1-203ENST00000391813 SS18Q15532 418 aa15.44■□□□□ 0.06
SHANK1-203ENST00000391813 SYNJ2BPP57105 145 aa15.43■□□□□ 0.06
SHANK1-203ENST00000391813 ODF1Q14990 250 aa15.43■□□□□ 0.06
SHANK1-203ENST00000391813 RPL32P62910 135 aaKnown RBP15.43■□□□□ 0.06
SHANK1-203ENST00000391813 ODF3L1Q8IXM7 274 aa15.43■□□□□ 0.06
SHANK1-203ENST00000391813 A4D1N5 150 aa15.43■□□□□ 0.06
SHANK1-203ENST00000391813 E9PLD3 99 aa15.43■□□□□ 0.06
SHANK1-203ENST00000391813 DIAPH2-AS1Q14236 149 aa15.43■□□□□ 0.06
SHANK1-203ENST00000391813 CFHR4Q92496 578 aa15.43■□□□□ 0.06
SHANK1-203ENST00000391813 C19orf71A6NCJ1 209 aa15.43■□□□□ 0.06
SHANK1-203ENST00000391813 ATOX1O00244 68 aa15.43■□□□□ 0.06
SHANK1-203ENST00000391813 PIP4P2Q8N4L2 257 aa15.42■□□□□ 0.06
SHANK1-203ENST00000391813 TTTY13Q9BZ97 58 aa15.42■□□□□ 0.06
SHANK1-203ENST00000391813 IGKV1-17P01599 117 aa15.42■□□□□ 0.06
SHANK1-203ENST00000391813 P0C879 139 aa15.42■□□□□ 0.06
SHANK1-203ENST00000391813 BAALC-AS2P0C853 105 aa15.41■□□□□ 0.06
SHANK1-203ENST00000391813 J3KT08 172 aa15.41■□□□□ 0.06
SHANK1-203ENST00000391813 IGKV1OR2-108A0A075B7D4 117 aa15.41■□□□□ 0.06
SHANK1-203ENST00000391813 RBMY1FQ15415 496 aaKnown RBP15.41■□□□□ 0.06
SHANK1-203ENST00000391813 SPINK13Q1W4C9 94 aa15.41■□□□□ 0.06
SHANK1-203ENST00000391813 KMT2EQ8IZD2 1858 aa15.4■□□□□ 0.06
SHANK1-203ENST00000391813 EP400Q96L91 3159 aa15.4■□□□□ 0.06
SHANK1-203ENST00000391813 H3BT86 120 aa15.4■□□□□ 0.06
SHANK1-203ENST00000391813 C22orf46C9J442 243 aa15.4■□□□□ 0.06
SHANK1-203ENST00000391813 IGHV1-69P01742 117 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms