RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 RASL10AQ92737 203 aa11.67□□□□□ -0.54
HMGN4-201ENST00000377575 UPK3BQ9BT76 320 aa11.67□□□□□ -0.54
HMGN4-201ENST00000377575 NKX6-2Q9C056 277 aaPredicted RBP11.67□□□□□ -0.54
HMGN4-201ENST00000377575 PRO0255Q9UI72 69 aa11.67□□□□□ -0.54
HMGN4-201ENST00000377575 ICOSQ9Y6W8 199 aa11.67□□□□□ -0.54
HMGN4-201ENST00000377575 DNAH17Q9UFH2 4485 aa11.66□□□□□ -0.54
HMGN4-201ENST00000377575 A0A096LPF7 62 aa11.66□□□□□ -0.54
HMGN4-201ENST00000377575 IGHV3-16A0A0C4DH30 117 aa11.66□□□□□ -0.54
HMGN4-201ENST00000377575 MAP1LC3B2A6NCE7 125 aa11.66□□□□□ -0.54
HMGN4-201ENST00000377575 IFNA7P01567 189 aa11.66□□□□□ -0.54
HMGN4-201ENST00000377575 TYMSP04818 313 aa11.66□□□□□ -0.54
HMGN4-201ENST00000377575 PPT1P50897 306 aa11.66□□□□□ -0.54
HMGN4-201ENST00000377575 FGF8P55075 233 aaPredicted RBP11.66□□□□□ -0.54
HMGN4-201ENST00000377575 UBE2G2P60604 165 aa11.66□□□□□ -0.54
HMGN4-201ENST00000377575 SMUG1Q53HV7 270 aa11.66□□□□□ -0.54
HMGN4-201ENST00000377575 PRNTQ86SH4 94 aa11.66□□□□□ -0.54
HMGN4-201ENST00000377575 C8orf49Q96NF6 230 aa11.66□□□□□ -0.54
HMGN4-201ENST00000377575 MAP1LC3BQ9GZQ8 125 aa11.66□□□□□ -0.54
HMGN4-201ENST00000377575 MRPS16Q9Y3D3 137 aaKnown RBP11.66□□□□□ -0.54
HMGN4-201ENST00000377575 TRGV4A0A0C4DH28 118 aa11.65□□□□□ -0.54
HMGN4-201ENST00000377575 HMSDA8MTL9 139 aa11.65□□□□□ -0.54
HMGN4-201ENST00000377575 M0R2P5 195 aa11.65□□□□□ -0.54
HMGN4-201ENST00000377575 GCGP01275 180 aa11.65□□□□□ -0.54
HMGN4-201ENST00000377575 IGLV2-11P01706 119 aa11.65□□□□□ -0.54
HMGN4-201ENST00000377575 PFN1P07737 140 aaKnown RBP11.65□□□□□ -0.54
HMGN4-201ENST00000377575 ESRGQ1W209 222 aa11.65□□□□□ -0.54
HMGN4-201ENST00000377575 TTC32Q5I0X7 151 aa11.65□□□□□ -0.54
HMGN4-201ENST00000377575 SAPCD1Q5SSQ6 148 aa11.65□□□□□ -0.54
HMGN4-201ENST00000377575 Q9H8V8 135 aa11.65□□□□□ -0.54
HMGN4-201ENST00000377575 HHLA3Q9XRX5 114 aa11.65□□□□□ -0.54
HMGN4-201ENST00000377575 TRAV4A0A0B4J268 109 aa11.64□□□□□ -0.55
HMGN4-201ENST00000377575 A0A0D9SG52 128 aa11.64□□□□□ -0.55
HMGN4-201ENST00000377575 A0A1B0GVY2 172 aa11.64□□□□□ -0.55
HMGN4-201ENST00000377575 KANTRA0A1W2PQU2 76 aa11.64□□□□□ -0.55
HMGN4-201ENST00000377575 FAM74A7A6NL05 159 aa11.64□□□□□ -0.55
HMGN4-201ENST00000377575 GNRH2O43555 120 aa11.64□□□□□ -0.55
HMGN4-201ENST00000377575 CRYBA4P53673 196 aa11.64□□□□□ -0.55
HMGN4-201ENST00000377575 FHL2Q14192 279 aa11.64□□□□□ -0.55
HMGN4-201ENST00000377575 STOML3Q8TAV4 291 aa11.64□□□□□ -0.55
HMGN4-201ENST00000377575 PEX7O00628 323 aa11.63□□□□□ -0.55
HMGN4-201ENST00000377575 LCE2BO14633 110 aa11.63□□□□□ -0.55
HMGN4-201ENST00000377575 SFTA3P0C7M3 94 aa11.63□□□□□ -0.55
HMGN4-201ENST00000377575 C6orf223Q8N319 242 aa11.63□□□□□ -0.55
HMGN4-201ENST00000377575 PCNPQ8WW12 178 aaKnown RBP11.63□□□□□ -0.55
HMGN4-201ENST00000377575 HIST1H2BAQ96A08 127 aa11.63□□□□□ -0.55
HMGN4-201ENST00000377575 BCL2L11O43521 198 aa11.62□□□□□ -0.55
HMGN4-201ENST00000377575 SEC11BP0C7V7 166 aa11.62□□□□□ -0.55
HMGN4-201ENST00000377575 ZNF80P51504 273 aaPredicted RBP11.62□□□□□ -0.55
HMGN4-201ENST00000377575 MRPL23Q16540 153 aaKnown RBP11.62□□□□□ -0.55
HMGN4-201ENST00000377575 OR4C5Q8NGB2 326 aa11.62□□□□□ -0.55
HMGN4-201ENST00000377575 OR11H4Q8NGC9 324 aa11.62□□□□□ -0.55
HMGN4-201ENST00000377575 ZNF479Q96JC4 524 aa11.62□□□□□ -0.55
HMGN4-201ENST00000377575 TCEAL7Q9BRU2 100 aa11.62□□□□□ -0.55
HMGN4-201ENST00000377575 ZNF471Q9BX82 626 aaPredicted RBP11.62□□□□□ -0.55
HMGN4-201ENST00000377575 ARL2-SNX15V9GYD0 113 aa11.62□□□□□ -0.55
HMGN4-201ENST00000377575 TRAV34A0A0B4J273 112 aa11.61□□□□□ -0.55
HMGN4-201ENST00000377575 A0A1W2PPQ1 181 aa11.61□□□□□ -0.55
HMGN4-201ENST00000377575 UMAD1C9J7I0 102 aa11.61□□□□□ -0.55
HMGN4-201ENST00000377575 EIF5AP63241 154 aaKnown RBP11.61□□□□□ -0.55
HMGN4-201ENST00000377575 Q86TA4 180 aa11.61□□□□□ -0.55
HMGN4-201ENST00000377575 PKHD1P08F94 4074 aa11.61□□□□□ -0.55
HMGN4-201ENST00000377575 C9JCJ5 164 aa11.6□□□□□ -0.55
HMGN4-201ENST00000377575 ORM1P02763 201 aa11.6□□□□□ -0.55
HMGN4-201ENST00000377575 SRIP30626 198 aa11.6□□□□□ -0.55
HMGN4-201ENST00000377575 LINC00479Q96M42 142 aa11.6□□□□□ -0.55
HMGN4-201ENST00000377575 C11orf21Q9P2W6 132 aa11.6□□□□□ -0.55
HMGN4-201ENST00000377575 PFDN1O60925 122 aa11.59□□□□□ -0.55
HMGN4-201ENST00000377575 FHITP49789 147 aa11.59□□□□□ -0.55
HMGN4-201ENST00000377575 UBE2G1P62253 170 aa11.59□□□□□ -0.55
HMGN4-201ENST00000377575 CST9LP1Q5W188 147 aa11.59□□□□□ -0.55
HMGN4-201ENST00000377575 DPPA3Q6W0C5 159 aa11.59□□□□□ -0.55
HMGN4-201ENST00000377575 NEGR1Q7Z3B1 354 aa11.59□□□□□ -0.55
HMGN4-201ENST00000377575 FAM213BQ8TBF2 198 aa11.59□□□□□ -0.55
HMGN4-201ENST00000377575 FMC1Q96HJ9 113 aa11.59□□□□□ -0.55
HMGN4-201ENST00000377575 PKD1P98161 4303 aa11.58□□□□□ -0.56
HMGN4-201ENST00000377575 K7EQD1 137 aa11.58□□□□□ -0.56
HMGN4-201ENST00000377575 GYPEP15421 78 aa11.58□□□□□ -0.56
HMGN4-201ENST00000377575 ZNF876PQ49A33 203 aa11.58□□□□□ -0.56
HMGN4-201ENST00000377575 C9orf85Q96MD7 179 aa11.58□□□□□ -0.56
HMGN4-201ENST00000377575 TXNDC17Q9BRA2 123 aa11.58□□□□□ -0.56
HMGN4-201ENST00000377575 FABP5P3A8MUU1 101 aa11.57□□□□□ -0.56
HMGN4-201ENST00000377575 SIVA1O15304 175 aa11.57□□□□□ -0.56
HMGN4-201ENST00000377575 CIDEAO60543 219 aa11.57□□□□□ -0.56
HMGN4-201ENST00000377575 NXPH4O95158 308 aa11.57□□□□□ -0.56
HMGN4-201ENST00000377575 TPT1P13693 172 aaKnown RBP11.57□□□□□ -0.56
HMGN4-201ENST00000377575 BTF3P20290 206 aaKnown RBP11.57□□□□□ -0.56
HMGN4-201ENST00000377575 SFT2D1Q8WV19 159 aa11.57□□□□□ -0.56
HMGN4-201ENST00000377575 ZFP30Q9Y2G7 519 aa11.57□□□□□ -0.56
HMGN4-201ENST00000377575 S100A4P26447 101 aaKnown RBP11.56□□□□□ -0.56
HMGN4-201ENST00000377575 AKR1C3P42330 323 aa11.56□□□□□ -0.56
HMGN4-201ENST00000377575 TMUB2Q71RG4 321 aa11.56□□□□□ -0.56
HMGN4-201ENST00000377575 MBD3L1Q8WWY6 194 aa11.56□□□□□ -0.56
HMGN4-201ENST00000377575 PTH2Q96A98 100 aa11.56□□□□□ -0.56
HMGN4-201ENST00000377575 KRTAP1-5Q9BYS1 174 aa11.56□□□□□ -0.56
HMGN4-201ENST00000377575 RNASE3P12724 160 aaKnown RBP11.55□□□□□ -0.56
HMGN4-201ENST00000377575 GATA1P15976 413 aaPredicted RBP11.55□□□□□ -0.56
HMGN4-201ENST00000377575 ASIPP42127 132 aa11.55□□□□□ -0.56
HMGN4-201ENST00000377575 ZNF506Q5JVG8 444 aa11.55□□□□□ -0.56
HMGN4-201ENST00000377575 LYPD5Q6UWN5 251 aa11.55□□□□□ -0.56
HMGN4-201ENST00000377575 SH2D6Q7Z4S9 175 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms