RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 FABP9Q0Z7S8 132 aa14.63□□□□□ -0.07
CLN3-205ENST00000359984 GFI1BQ5VTD9 330 aa14.62□□□□□ -0.07
CLN3-205ENST00000359984 RPP21Q9H633 154 aaKnown RBP14.62□□□□□ -0.07
CLN3-205ENST00000359984 CA1P00915 261 aaPredicted RBP14.61□□□□□ -0.07
CLN3-205ENST00000359984 TRGC1P0CF51 173 aa14.61□□□□□ -0.07
CLN3-205ENST00000359984 KRTAP21-3Q3LHN1 58 aa14.61□□□□□ -0.07
CLN3-205ENST00000359984 SAMD5Q5TGI4 173 aa14.61□□□□□ -0.07
CLN3-205ENST00000359984 Q6AWC8 147 aa14.61□□□□□ -0.07
CLN3-205ENST00000359984 LINC00518Q8N0U6 118 aa14.61□□□□□ -0.07
CLN3-205ENST00000359984 C11orf21Q9P2W6 132 aa14.61□□□□□ -0.07
CLN3-205ENST00000359984 TRAV21A0A0B4J279 112 aa14.61□□□□□ -0.07
CLN3-205ENST00000359984 C7orf71A4D174 169 aa14.61□□□□□ -0.07
CLN3-205ENST00000359984 CRXO43186 299 aaPredicted RBP14.61□□□□□ -0.07
CLN3-205ENST00000359984 OR2D3Q8NGH3 330 aa14.61□□□□□ -0.07
CLN3-205ENST00000359984 IL36BQ9NZH7 164 aa14.61□□□□□ -0.07
CLN3-205ENST00000359984 TRAV12-3A0A0B4J271 114 aa14.6□□□□□ -0.07
CLN3-205ENST00000359984 RPL35AP18077 110 aaKnown RBP14.6□□□□□ -0.07
CLN3-205ENST00000359984 HOXA5P20719 270 aa14.6□□□□□ -0.07
CLN3-205ENST00000359984 AKR1D1P51857 326 aa14.6□□□□□ -0.07
CLN3-205ENST00000359984 RPL19P84098 196 aaKnown RBP14.6□□□□□ -0.07
CLN3-205ENST00000359984 BTF3L4Q96K17 158 aa14.6□□□□□ -0.07
CLN3-205ENST00000359984 TRAV9-1A0A075B6T8 112 aa14.59□□□□□ -0.07
CLN3-205ENST00000359984 ZNF324O75467 553 aaPredicted RBP14.59□□□□□ -0.07
CLN3-205ENST00000359984 ORM1P02763 201 aa14.59□□□□□ -0.07
CLN3-205ENST00000359984 TMEM189A5PLL7 270 aa14.58□□□□□ -0.08
CLN3-205ENST00000359984 NDUFA6P56556 154 aa14.58□□□□□ -0.08
CLN3-205ENST00000359984 NUTF2P61970 127 aaKnown RBP14.58□□□□□ -0.08
CLN3-205ENST00000359984 ZNF575Q86XF7 245 aa14.58□□□□□ -0.08
CLN3-205ENST00000359984 TMSB15BA0A087X1C1 80 aa14.57□□□□□ -0.08
CLN3-205ENST00000359984 IGKV3D-20A0A0C4DH25 116 aa14.57□□□□□ -0.08
CLN3-205ENST00000359984 LINC01559Q495D7 138 aa14.57□□□□□ -0.08
CLN3-205ENST00000359984 CT83Q5H943 113 aa14.57□□□□□ -0.08
CLN3-205ENST00000359984 GZMBP10144 247 aa14.57□□□□□ -0.08
CLN3-205ENST00000359984 XCL2Q9UBD3 114 aa14.57□□□□□ -0.08
CLN3-205ENST00000359984 A8MWL6 223 aa14.56□□□□□ -0.08
CLN3-205ENST00000359984 AMBPP02760 352 aa14.56□□□□□ -0.08
CLN3-205ENST00000359984 GIG44P09565 113 aaPredicted RBP14.56□□□□□ -0.08
CLN3-205ENST00000359984 RBMY1A1P0DJD3 496 aaKnown RBP14.56□□□□□ -0.08
CLN3-205ENST00000359984 RBMY1CP0DJD4 496 aa14.56□□□□□ -0.08
CLN3-205ENST00000359984 RBMY1FQ15415 496 aaKnown RBP14.56□□□□□ -0.08
CLN3-205ENST00000359984 TSKUQ8WUA8 353 aa14.56□□□□□ -0.08
CLN3-205ENST00000359984 NAGKQ9UJ70 344 aa14.56□□□□□ -0.08
CLN3-205ENST00000359984 TCL1AP56279 114 aa14.55□□□□□ -0.08
CLN3-205ENST00000359984 MUC21Q5SSG8 566 aa14.55□□□□□ -0.08
CLN3-205ENST00000359984 SMIM27A0A1W2PRY6 76 aa14.55□□□□□ -0.08
CLN3-205ENST00000359984 IFITM10A6NMD0 228 aa14.55□□□□□ -0.08
CLN3-205ENST00000359984 ANXA2RQ3ZCQ2 193 aa14.55□□□□□ -0.08
CLN3-205ENST00000359984 MORN3Q6PF18 240 aaPredicted RBP14.55□□□□□ -0.08
CLN3-205ENST00000359984 S100A12P80511 92 aa14.54□□□□□ -0.08
CLN3-205ENST00000359984 GTSF1Q8WW33 167 aa14.54□□□□□ -0.08
CLN3-205ENST00000359984 NEU1Q99519 415 aa14.54□□□□□ -0.08
CLN3-205ENST00000359984 INSP01308 110 aa14.53□□□□□ -0.08
CLN3-205ENST00000359984 S100A8P05109 93 aa14.53□□□□□ -0.08
CLN3-205ENST00000359984 RPS20P60866 119 aaKnown RBP14.53□□□□□ -0.08
CLN3-205ENST00000359984 XKRY2A2RUG3 117 aa14.52□□□□□ -0.08
CLN3-205ENST00000359984 GRIFINA4D1Z8 144 aa14.52□□□□□ -0.08
CLN3-205ENST00000359984 LOC102724200A0A096LPH7 203 aaPredicted RBP14.52□□□□□ -0.09
CLN3-205ENST00000359984 IGHV4-30-4P0DP06 118 aa14.52□□□□□ -0.09
CLN3-205ENST00000359984 GFRA4Q9GZZ7 299 aa14.52□□□□□ -0.09
CLN3-205ENST00000359984 CSTL1Q9H114 145 aa14.52□□□□□ -0.09
CLN3-205ENST00000359984 COA6Q5JTJ3 125 aaKnown RBP14.51□□□□□ -0.09
CLN3-205ENST00000359984 FAM159AQ6UWV7 190 aa14.51□□□□□ -0.09
CLN3-205ENST00000359984 C20orf144Q9BQM9 153 aa14.51□□□□□ -0.09
CLN3-205ENST00000359984 MGAM2Q2M2H8 2515 aa14.51□□□□□ -0.09
CLN3-205ENST00000359984 IGHV1OR15-1A0A075B7D0 117 aa14.5□□□□□ -0.09
CLN3-205ENST00000359984 FAM231BA6NCW3 169 aa14.5□□□□□ -0.09
CLN3-205ENST00000359984 HIGD1CA8MV81 97 aa14.5□□□□□ -0.09
CLN3-205ENST00000359984 GNRH2O43555 120 aa14.5□□□□□ -0.09
CLN3-205ENST00000359984 C1orf158Q8N1D5 194 aa14.5□□□□□ -0.09
CLN3-205ENST00000359984 HIST3H2BBQ8N257 126 aa14.5□□□□□ -0.09
CLN3-205ENST00000359984 FOXA3P55318 350 aaPredicted RBP14.5□□□□□ -0.09
CLN3-205ENST00000359984 TDRG1Q3Y452 100 aa14.5□□□□□ -0.09
CLN3-205ENST00000359984 NUP35Q8NFH5 326 aa14.5□□□□□ -0.09
CLN3-205ENST00000359984 C1QTNF4Q9BXJ3 329 aa14.5□□□□□ -0.09
CLN3-205ENST00000359984 NAT8BQ9UHF3 227 aa14.5□□□□□ -0.09
CLN3-205ENST00000359984 KCNS1Q96KK3 526 aa14.49□□□□□ -0.09
CLN3-205ENST00000359984 C12orf57Q99622 126 aa14.49□□□□□ -0.09
CLN3-205ENST00000359984 TRAPPC1Q9Y5R8 145 aa14.49□□□□□ -0.09
CLN3-205ENST00000359984 NOTCH1P46531 2555 aa14.49□□□□□ -0.09
CLN3-205ENST00000359984 KPRPQ5T749 579 aaPredicted RBP14.48□□□□□ -0.09
CLN3-205ENST00000359984 CSNK1G2-AS1Q8NCQ2 148 aa14.48□□□□□ -0.09
CLN3-205ENST00000359984 PGLYRP4Q96LB8 373 aa14.48□□□□□ -0.09
CLN3-205ENST00000359984 LINC01587Q99440 93 aa14.48□□□□□ -0.09
CLN3-205ENST00000359984 TP53TG3Q9ULZ0 132 aa14.48□□□□□ -0.09
CLN3-205ENST00000359984 DNAH3Q8TD57 4116 aa14.48□□□□□ -0.09
CLN3-205ENST00000359984 IGLC6P0CF74 106 aa14.48□□□□□ -0.09
CLN3-205ENST00000359984 TPPP3Q9BW30 176 aa14.48□□□□□ -0.09
CLN3-205ENST00000359984 NBEAL1Q6ZS30 2694 aa14.47□□□□□ -0.09
CLN3-205ENST00000359984 KIR2DL5BA0A0G2JN68 375 aa14.47□□□□□ -0.09
CLN3-205ENST00000359984 KIR2DL5BA0A0G2JPC4 375 aa14.47□□□□□ -0.09
CLN3-205ENST00000359984 SPINK4O60575 86 aa14.47□□□□□ -0.09
CLN3-205ENST00000359984 PRM2P04554 102 aa14.47□□□□□ -0.09
CLN3-205ENST00000359984 FRMD6-AS1P0C7T7 363 aa14.47□□□□□ -0.09
CLN3-205ENST00000359984 SMIM6P0DI80 62 aa14.47□□□□□ -0.09
CLN3-205ENST00000359984 KIR2DL5AQ8N109 375 aa14.47□□□□□ -0.09
CLN3-205ENST00000359984 FER1L6-AS1Q8NA97 138 aa14.47□□□□□ -0.09
CLN3-205ENST00000359984 KIR2DL5BQ8NHK3 375 aa14.47□□□□□ -0.09
CLN3-205ENST00000359984 LYZL1Q6UWQ5 148 aa14.46□□□□□ -0.09
CLN3-205ENST00000359984 TMEM256Q8N2U0 113 aa14.46□□□□□ -0.09
CLN3-205ENST00000359984 TMEM208Q9BTX3 173 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms