RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 UPK3BQ9BT76 320 aa12.68□□□□□ -0.38
CLN3-202ENST00000355477 C11orf21Q9P2W6 132 aa12.68□□□□□ -0.38
CLN3-202ENST00000355477 PRO0255Q9UI72 69 aa12.68□□□□□ -0.38
CLN3-202ENST00000355477 HHLA3Q9XRX5 114 aa12.68□□□□□ -0.38
CLN3-202ENST00000355477 A0A1W2PRE2 83 aa12.67□□□□□ -0.38
CLN3-202ENST00000355477 K7EQM0 130 aa12.67□□□□□ -0.38
CLN3-202ENST00000355477 AKR1C8PQ5T2L2 129 aa12.67□□□□□ -0.38
CLN3-202ENST00000355477 PRNTQ86SH4 94 aa12.67□□□□□ -0.38
CLN3-202ENST00000355477 LINC00479Q96M42 142 aa12.67□□□□□ -0.38
CLN3-202ENST00000355477 NDFIP1Q9BT67 221 aa12.67□□□□□ -0.38
CLN3-202ENST00000355477 KRTAP1-5Q9BYS1 174 aa12.67□□□□□ -0.38
CLN3-202ENST00000355477 MRPS16Q9Y3D3 137 aaKnown RBP12.67□□□□□ -0.38
CLN3-202ENST00000355477 UBE2G2P60604 165 aa12.66□□□□□ -0.38
CLN3-202ENST00000355477 FLI1Q01543 452 aaPredicted RBP12.66□□□□□ -0.38
CLN3-202ENST00000355477 C6orf223Q8N319 242 aa12.66□□□□□ -0.38
CLN3-202ENST00000355477 CYB561D1Q8N8Q1 229 aa12.66□□□□□ -0.38
CLN3-202ENST00000355477 TMEM75Q8N9X5 138 aa12.66□□□□□ -0.38
CLN3-202ENST00000355477 OR11H4Q8NGC9 324 aa12.66□□□□□ -0.38
CLN3-202ENST00000355477 SDF2L1Q9HCN8 221 aa12.66□□□□□ -0.38
CLN3-202ENST00000355477 TRAV34A0A0B4J273 112 aa12.65□□□□□ -0.38
CLN3-202ENST00000355477 TRGV4A0A0C4DH28 118 aa12.65□□□□□ -0.38
CLN3-202ENST00000355477 M0R2P5 195 aa12.65□□□□□ -0.38
CLN3-202ENST00000355477 GCGP01275 180 aa12.65□□□□□ -0.38
CLN3-202ENST00000355477 SLAQ13239 276 aa12.65□□□□□ -0.38
CLN3-202ENST00000355477 KCNS1Q96KK3 526 aa12.65□□□□□ -0.38
CLN3-202ENST00000355477 ICOSQ9Y6W8 199 aa12.65□□□□□ -0.38
CLN3-202ENST00000355477 FAM74A7A6NL05 159 aa12.64□□□□□ -0.39
CLN3-202ENST00000355477 TNP2Q05952 138 aa12.64□□□□□ -0.39
CLN3-202ENST00000355477 KCNRGQ8N5I3 272 aa12.64□□□□□ -0.39
CLN3-202ENST00000355477 HERC2O95714 4834 aa12.64□□□□□ -0.39
CLN3-202ENST00000355477 DNAH11Q96DT5 4516 aa12.63□□□□□ -0.39
CLN3-202ENST00000355477 IFNA7P01567 189 aa12.63□□□□□ -0.39
CLN3-202ENST00000355477 PFN1P07737 140 aaKnown RBP12.63□□□□□ -0.39
CLN3-202ENST00000355477 FHITP49789 147 aa12.63□□□□□ -0.39
CLN3-202ENST00000355477 SMUG1Q53HV7 270 aa12.63□□□□□ -0.39
CLN3-202ENST00000355477 KIAA1109Q2LD37 5005 aa12.62□□□□□ -0.39
CLN3-202ENST00000355477 TRAV4A0A0B4J268 109 aa12.62□□□□□ -0.39
CLN3-202ENST00000355477 MAP1LC3B2A6NCE7 125 aa12.62□□□□□ -0.39
CLN3-202ENST00000355477 ZNF345Q14585 488 aa12.62□□□□□ -0.39
CLN3-202ENST00000355477 MAP1LC3BQ9GZQ8 125 aa12.62□□□□□ -0.39
CLN3-202ENST00000355477 DYNC1H1Q14204 4646 aaKnown RBP12.62□□□□□ -0.39
CLN3-202ENST00000355477 FBLL1A6NHQ2 334 aaKnown RBP12.61□□□□□ -0.39
CLN3-202ENST00000355477 HMSDA8MTL9 139 aa12.61□□□□□ -0.39
CLN3-202ENST00000355477 MRPL23Q16540 153 aaKnown RBP12.61□□□□□ -0.39
CLN3-202ENST00000355477 SAPCD1Q5SSQ6 148 aa12.61□□□□□ -0.39
CLN3-202ENST00000355477 LYPD5Q6UWN5 251 aa12.61□□□□□ -0.39
CLN3-202ENST00000355477 OR4C5Q8NGB2 326 aa12.61□□□□□ -0.39
CLN3-202ENST00000355477 K7EQD1 137 aa12.6□□□□□ -0.39
CLN3-202ENST00000355477 PEX7O00628 323 aa12.6□□□□□ -0.39
CLN3-202ENST00000355477 GYPEP15421 78 aa12.6□□□□□ -0.39
CLN3-202ENST00000355477 ZFP69Q49AA0 526 aa12.6□□□□□ -0.39
CLN3-202ENST00000355477 TTC32Q5I0X7 151 aa12.6□□□□□ -0.39
CLN3-202ENST00000355477 ARL2-SNX15V9GYD0 113 aa12.6□□□□□ -0.39
CLN3-202ENST00000355477 C9JCJ5 164 aa12.59□□□□□ -0.39
CLN3-202ENST00000355477 NXPH4O95158 308 aa12.59□□□□□ -0.39
CLN3-202ENST00000355477 C9orf85Q96MD7 179 aa12.59□□□□□ -0.39
CLN3-202ENST00000355477 NKX6-2Q9C056 277 aaPredicted RBP12.59□□□□□ -0.39
CLN3-202ENST00000355477 A0A0D9SG52 128 aa12.58□□□□□ -0.4
CLN3-202ENST00000355477 LOC100131303A0A0U1RQF7 123 aa12.58□□□□□ -0.4
CLN3-202ENST00000355477 A0A1W2PPQ1 181 aa12.58□□□□□ -0.4
CLN3-202ENST00000355477 SIVA1O15304 175 aa12.58□□□□□ -0.4
CLN3-202ENST00000355477 RNASE3P12724 160 aaKnown RBP12.58□□□□□ -0.4
CLN3-202ENST00000355477 PPT1P50897 306 aa12.58□□□□□ -0.4
CLN3-202ENST00000355477 ZNF876PQ49A33 203 aa12.58□□□□□ -0.4
CLN3-202ENST00000355477 DPPA3Q6W0C5 159 aa12.58□□□□□ -0.4
CLN3-202ENST00000355477 NEGR1Q7Z3B1 354 aa12.58□□□□□ -0.4
CLN3-202ENST00000355477 Q86TA4 180 aa12.58□□□□□ -0.4
CLN3-202ENST00000355477 HIST1H2BAQ96A08 127 aa12.58□□□□□ -0.4
CLN3-202ENST00000355477 IGKV3D-20A0A0C4DH25 116 aa12.57□□□□□ -0.4
CLN3-202ENST00000355477 PGPEP1LA6NFU8 196 aa12.57□□□□□ -0.4
CLN3-202ENST00000355477 SEC11BP0C7V7 166 aa12.57□□□□□ -0.4
CLN3-202ENST00000355477 ZNF575Q86XF7 245 aa12.57□□□□□ -0.4
CLN3-202ENST00000355477 ZNF471Q9BX82 626 aaPredicted RBP12.57□□□□□ -0.4
CLN3-202ENST00000355477 FABP5P3A8MUU1 101 aa12.56□□□□□ -0.4
CLN3-202ENST00000355477 RS1O15537 224 aa12.56□□□□□ -0.4
CLN3-202ENST00000355477 BCL2L11O43521 198 aa12.56□□□□□ -0.4
CLN3-202ENST00000355477 ORM1P02763 201 aa12.56□□□□□ -0.4
CLN3-202ENST00000355477 GATA1P15976 413 aaPredicted RBP12.56□□□□□ -0.4
CLN3-202ENST00000355477 SRIP30626 198 aa12.56□□□□□ -0.4
CLN3-202ENST00000355477 CRIP1P50238 77 aa12.56□□□□□ -0.4
CLN3-202ENST00000355477 CFAP126Q5VTH2 177 aa12.56□□□□□ -0.4
CLN3-202ENST00000355477 CST9LP1Q5W188 147 aa12.56□□□□□ -0.4
CLN3-202ENST00000355477 STOML3Q8TAV4 291 aa12.56□□□□□ -0.4
CLN3-202ENST00000355477 FAM213BQ8TBF2 198 aa12.56□□□□□ -0.4
CLN3-202ENST00000355477 MBD3L1Q8WWY6 194 aa12.56□□□□□ -0.4
CLN3-202ENST00000355477 ZC2HC1AQ96GY0 325 aa12.56□□□□□ -0.4
CLN3-202ENST00000355477 KANTRA0A1W2PQU2 76 aa12.55□□□□□ -0.4
CLN3-202ENST00000355477 ZNF506Q5JVG8 444 aa12.55□□□□□ -0.4
CLN3-202ENST00000355477 TMUB2Q71RG4 321 aa12.55□□□□□ -0.4
CLN3-202ENST00000355477 SFT2D1Q8WV19 159 aa12.55□□□□□ -0.4
CLN3-202ENST00000355477 PCNPQ8WW12 178 aaKnown RBP12.55□□□□□ -0.4
CLN3-202ENST00000355477 A0A1B0GV50 99 aa12.54□□□□□ -0.4
CLN3-202ENST00000355477 PAGE4O60829 102 aa12.54□□□□□ -0.4
CLN3-202ENST00000355477 PTH2Q96A98 100 aa12.54□□□□□ -0.4
CLN3-202ENST00000355477 IGHV3-73A0A0B4J1V6 119 aa12.53□□□□□ -0.4
CLN3-202ENST00000355477 UMAD1C9J7I0 102 aa12.53□□□□□ -0.4
CLN3-202ENST00000355477 MED14OSP0DP75 135 aa12.53□□□□□ -0.4
CLN3-202ENST00000355477 LINC00315P59091 139 aa12.53□□□□□ -0.4
CLN3-202ENST00000355477 COX8CQ7Z4L0 72 aa12.53□□□□□ -0.4
CLN3-202ENST00000355477 SLC25A29Q8N8R3 303 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms