RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 SMG1Q96Q15 3661 aaKnown RBP12.22□□□□□ -0.45
HMGA1-202ENST00000347617 ODF3BA8MYP8 253 aa12.22□□□□□ -0.45
HMGA1-202ENST00000347617 OOSP1A8MZH6 123 aa12.22□□□□□ -0.45
HMGA1-202ENST00000347617 LMO4P61968 165 aa12.22□□□□□ -0.45
HMGA1-202ENST00000347617 NRACQ8N912 160 aa12.22□□□□□ -0.45
HMGA1-202ENST00000347617 MRPL53Q96EL3 112 aaKnown RBP12.22□□□□□ -0.45
HMGA1-202ENST00000347617 IGHV4-39P01824 125 aa12.21□□□□□ -0.45
HMGA1-202ENST00000347617 Q8TAT8 98 aa12.21□□□□□ -0.45
HMGA1-202ENST00000347617 FANCD2OSQ96PS1 177 aa12.21□□□□□ -0.45
HMGA1-202ENST00000347617 CCL19Q99731 98 aa12.21□□□□□ -0.45
HMGA1-202ENST00000347617 LINC01549A6NIU2 74 aa12.2□□□□□ -0.46
HMGA1-202ENST00000347617 IGHG4P01861 327 aa12.2□□□□□ -0.46
HMGA1-202ENST00000347617 MINOS1Q5TGZ0 78 aa12.2□□□□□ -0.46
HMGA1-202ENST00000347617 CFAP126Q5VTH2 177 aa12.2□□□□□ -0.46
HMGA1-202ENST00000347617 C8orf86Q6ZUL3 223 aa12.2□□□□□ -0.46
HMGA1-202ENST00000347617 MINOS1-NBL1R4GNA1 71 aa12.2□□□□□ -0.46
HMGA1-202ENST00000347617 TIMM23O14925 209 aa12.2□□□□□ -0.46
HMGA1-202ENST00000347617 ZFP36P26651 326 aaKnown RBP12.2□□□□□ -0.46
HMGA1-202ENST00000347617 CRYBA4P53673 196 aa12.2□□□□□ -0.46
HMGA1-202ENST00000347617 BPESC1Q9GZL8 116 aa12.2□□□□□ -0.46
HMGA1-202ENST00000347617 SMAD5-AS1Q9Y6J3 95 aa12.2□□□□□ -0.46
HMGA1-202ENST00000347617 F8W735 103 aaPredicted RBP12.19□□□□□ -0.46
HMGA1-202ENST00000347617 COX7A1P24310 79 aa12.19□□□□□ -0.46
HMGA1-202ENST00000347617 C5orf64Q2M2E5 130 aa12.19□□□□□ -0.46
HMGA1-202ENST00000347617 SIRPDQ9H106 197 aa12.19□□□□□ -0.46
HMGA1-202ENST00000347617 GEMIN7Q9H840 131 aaKnown RBP12.19□□□□□ -0.46
HMGA1-202ENST00000347617 MORN3Q6PF18 240 aaPredicted RBP12.18□□□□□ -0.46
HMGA1-202ENST00000347617 C20orf78Q9BR46 151 aa12.18□□□□□ -0.46
HMGA1-202ENST00000347617 SMIM2Q9BVW6 85 aa12.18□□□□□ -0.46
HMGA1-202ENST00000347617 AGRNO00468 2067 aa12.18□□□□□ -0.46
HMGA1-202ENST00000347617 LRBAP50851 2863 aa12.18□□□□□ -0.46
HMGA1-202ENST00000347617 GAS8-AS1O95177 125 aa12.18□□□□□ -0.46
HMGA1-202ENST00000347617 DSCR9P59020 149 aa12.18□□□□□ -0.46
HMGA1-202ENST00000347617 DYNAPQ8N1N2 210 aa12.18□□□□□ -0.46
HMGA1-202ENST00000347617 PPDPFLQ8WWR9 84 aa12.18□□□□□ -0.46
HMGA1-202ENST00000347617 CFHR4Q92496 578 aa12.18□□□□□ -0.46
HMGA1-202ENST00000347617 TOMM6Q96B49 74 aa12.18□□□□□ -0.46
HMGA1-202ENST00000347617 PIMREGQ9BSJ6 248 aa12.18□□□□□ -0.46
HMGA1-202ENST00000347617 TRBV20-1A0A075B6N2 111 aa12.17□□□□□ -0.46
HMGA1-202ENST00000347617 GATA1P15976 413 aaPredicted RBP12.17□□□□□ -0.46
HMGA1-202ENST00000347617 UBE2D1P51668 147 aa12.17□□□□□ -0.46
HMGA1-202ENST00000347617 AMTNQ6UX39 209 aa12.17□□□□□ -0.46
HMGA1-202ENST00000347617 C10orf105Q8TEF2 133 aa12.17□□□□□ -0.46
HMGA1-202ENST00000347617 PGPEP1Q9NXJ5 209 aa12.17□□□□□ -0.46
HMGA1-202ENST00000347617 LGALS1P09382 135 aaKnown RBP12.16□□□□□ -0.46
HMGA1-202ENST00000347617 COX6B1P14854 86 aa12.16□□□□□ -0.46
HMGA1-202ENST00000347617 PAPPA-AS1Q5QFB9 102 aa12.16□□□□□ -0.46
HMGA1-202ENST00000347617 TMEM78Q5T7P6 136 aa12.16□□□□□ -0.46
HMGA1-202ENST00000347617 VMO1Q7Z5L0 202 aa12.16□□□□□ -0.46
HMGA1-202ENST00000347617 SYT8Q8NBV8 401 aa12.16□□□□□ -0.46
HMGA1-202ENST00000347617 CLUHP3Q96NS8 147 aa12.16□□□□□ -0.46
HMGA1-202ENST00000347617 IGKV3D-20A0A0C4DH25 116 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 PPP1R17O96001 155 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 CTSGP08311 255 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 UBE2E1P51965 193 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 ERCC8Q13216 396 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 NEXN-AS1Q8NBZ9 246 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 SCGB3A1Q96QR1 104 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 CDIP1Q9H305 208 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 TMEM262E9PQX1 116 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 M0QXV9 152 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 M0R381 172 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 SPINK8P0C7L1 97 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 DLX1P56177 255 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 UBE2D3P61077 147 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 UBE2D2P62837 147 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 EBI3Q14213 229 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 KLK9Q2XQG4 91 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 KLK9Q9UKQ9 250 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 LENEPQ9Y5L5 61 aa12.15□□□□□ -0.46
HMGA1-202ENST00000347617 TRAV26-1A0A087WT03 109 aa12.14□□□□□ -0.47
HMGA1-202ENST00000347617 IGHV7-4-1A0A0J9YVY3 117 aa12.14□□□□□ -0.47
HMGA1-202ENST00000347617 TEN1Q86WV5 123 aa12.14□□□□□ -0.47
HMGA1-202ENST00000347617 USP9XQ93008 2570 aaPredicted RBP12.14□□□□□ -0.47
HMGA1-202ENST00000347617 CENPVL3A0A0U1RRI6 287 aa12.13□□□□□ -0.47
HMGA1-202ENST00000347617 TRGV3P03979 118 aa12.13□□□□□ -0.47
HMGA1-202ENST00000347617 ATP5J2P56134 94 aa12.13□□□□□ -0.47
HMGA1-202ENST00000347617 ATP5G2Q06055 141 aa12.13□□□□□ -0.47
HMGA1-202ENST00000347617 SPANXN1Q5VSR9 72 aa12.13□□□□□ -0.47
HMGA1-202ENST00000347617 SBSPONQ8IVN8 264 aa12.13□□□□□ -0.47
HMGA1-202ENST00000347617 EPG5Q9HCE0 2579 aa12.13□□□□□ -0.47
HMGA1-202ENST00000347617 HLA-DMBP28068 263 aa12.13□□□□□ -0.47
HMGA1-202ENST00000347617 INSL3P51460 131 aa12.13□□□□□ -0.47
HMGA1-202ENST00000347617 HERVK_113P61574 105 aa12.13□□□□□ -0.47
HMGA1-202ENST00000347617 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.13□□□□□ -0.47
HMGA1-202ENST00000347617 C9orf47Q6ZRZ4 202 aa12.13□□□□□ -0.47
HMGA1-202ENST00000347617 Q6ZUT4 128 aa12.13□□□□□ -0.47
HMGA1-202ENST00000347617 UFC1Q9Y3C8 167 aa12.13□□□□□ -0.47
HMGA1-202ENST00000347617 ZNF462Q96JM2 2506 aa12.12□□□□□ -0.47
HMGA1-202ENST00000347617 PRB4P10163 310 aaPredicted RBP12.12□□□□□ -0.47
HMGA1-202ENST00000347617 S4R3C0 116 aa12.12□□□□□ -0.47
HMGA1-202ENST00000347617 DCHS2Q6V1P9 2916 aa12.12□□□□□ -0.47
HMGA1-202ENST00000347617 ZNF815PA8K554 130 aa12.11□□□□□ -0.47
HMGA1-202ENST00000347617 BUB3O43684 328 aa12.11□□□□□ -0.47
HMGA1-202ENST00000347617 MED14OSP0DP75 135 aa12.11□□□□□ -0.47
HMGA1-202ENST00000347617 SMCPP49901 116 aaPredicted RBP12.11□□□□□ -0.47
HMGA1-202ENST00000347617 SUMO2P61956 95 aaKnown RBP12.11□□□□□ -0.47
HMGA1-202ENST00000347617 PRADC1Q9BSG0 188 aa12.11□□□□□ -0.47
HMGA1-202ENST00000347617 AGPAT4-IT1Q9H0P7 198 aa12.11□□□□□ -0.47
HMGA1-202ENST00000347617 FLNCQ14315 2725 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms