RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 PMVKQ15126 192 aa10.47□□□□□ -0.73
LDLR-201ENST00000252444 MRPL23Q16540 153 aaKnown RBP10.47□□□□□ -0.73
LDLR-201ENST00000252444 LINC00479Q96M42 142 aa10.47□□□□□ -0.73
LDLR-201ENST00000252444 ICOSQ9Y6W8 199 aa10.47□□□□□ -0.73
LDLR-201ENST00000252444 KIAA2026Q5HYC2 2103 aa10.46□□□□□ -0.73
LDLR-201ENST00000252444 TMEM263Q8WUH6 116 aaKnown RBP10.46□□□□□ -0.73
LDLR-201ENST00000252444 K7EQG2 157 aa10.46□□□□□ -0.74
LDLR-201ENST00000252444 HIST1H2BLQ99880 126 aa10.46□□□□□ -0.74
LDLR-201ENST00000252444 KLK9Q9UKQ9 250 aa10.46□□□□□ -0.74
LDLR-201ENST00000252444 CD300EQ496F6 205 aaPredicted RBP10.46□□□□□ -0.74
LDLR-201ENST00000252444 GSN-AS1Q9NRJ2 163 aa10.46□□□□□ -0.74
LDLR-201ENST00000252444 COL6A6A6NMZ7 2263 aa10.46□□□□□ -0.74
LDLR-201ENST00000252444 CHD3Q12873 2000 aaKnown RBP10.46□□□□□ -0.74
LDLR-201ENST00000252444 TRBV10-1A0A0K0K1A3 114 aa10.45□□□□□ -0.74
LDLR-201ENST00000252444 PAX4O43316 350 aa10.45□□□□□ -0.74
LDLR-201ENST00000252444 LYRM9A8MSI8 78 aa10.45□□□□□ -0.74
LDLR-201ENST00000252444 SDHAF1A6NFY7 115 aa10.45□□□□□ -0.74
LDLR-201ENST00000252444 RNF224P0DH78 156 aa10.45□□□□□ -0.74
LDLR-201ENST00000252444 DEFB130BP0DP73 79 aa10.45□□□□□ -0.74
LDLR-201ENST00000252444 DEFB130AP0DP74 79 aa10.45□□□□□ -0.74
LDLR-201ENST00000252444 HERVK_113P63121 156 aa10.45□□□□□ -0.74
LDLR-201ENST00000252444 Q71RC1 249 aaPredicted RBP10.45□□□□□ -0.74
LDLR-201ENST00000252444 CYYR1Q96J86 154 aa10.45□□□□□ -0.74
LDLR-201ENST00000252444 MALRD1Q5VYJ5 2156 aa10.45□□□□□ -0.74
LDLR-201ENST00000252444 LINC01545Q5VT33 79 aa10.45□□□□□ -0.74
LDLR-201ENST00000252444 ZFAND3Q9H8U3 227 aa10.45□□□□□ -0.74
LDLR-201ENST00000252444 ICE1Q9Y2F5 2266 aa10.45□□□□□ -0.74
LDLR-201ENST00000252444 SYS1-DBNDD2H3BUS1 97 aa10.44□□□□□ -0.74
LDLR-201ENST00000252444 C18orf32Q8TCD1 76 aa10.44□□□□□ -0.74
LDLR-201ENST00000252444 MAP6D1Q9H9H5 199 aa10.44□□□□□ -0.74
LDLR-201ENST00000252444 LGALS9BQ3B8N2 356 aa10.44□□□□□ -0.74
LDLR-201ENST00000252444 PIK3CD-AS1Q5SR53 167 aa10.44□□□□□ -0.74
LDLR-201ENST00000252444 LGALS9CQ6DKI2 356 aa10.44□□□□□ -0.74
LDLR-201ENST00000252444 KLK5Q9Y337 293 aaPredicted RBP10.44□□□□□ -0.74
LDLR-201ENST00000252444 IGKV3OR2-268A0A0C4DH90 116 aa10.44□□□□□ -0.74
LDLR-201ENST00000252444 DNAL4O96015 105 aa10.44□□□□□ -0.74
LDLR-201ENST00000252444 ZNF295-AS1Q8N0V1 137 aa10.44□□□□□ -0.74
LDLR-201ENST00000252444 K7EQD1 137 aa10.44□□□□□ -0.74
LDLR-201ENST00000252444 PCNX3Q9H6A9 2034 aa10.44□□□□□ -0.74
LDLR-201ENST00000252444 DEFB114Q30KQ6 69 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 A0A087WWL8 130 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 GAGE12BA1L429 117 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 SLC25A20O43772 301 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 GAGE7O76087 117 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 GAGE12FP0CL80 117 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 GAGE12GP0CL81 117 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 GAGE12IP0CL82 117 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 IGKV1OR2-108A0A075B7D4 117 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 CRLF1O75462 422 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 EGR2P11161 476 aaPredicted RBP10.43□□□□□ -0.74
LDLR-201ENST00000252444 KIR2DL5BA0A0G2JN68 375 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 KIR2DL5BA0A0G2JPC4 375 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 C2orf66Q6UXQ4 117 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 KIR2DL5AQ8N109 375 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 FAM19A2Q8N3H0 131 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 KIR2DL5BQ8NHK3 375 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 CEP250Q9BV73 2442 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 C9JQL5 133 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 E7EUB6 86 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 CDSNQ15517 529 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 DEFB136Q30KP8 78 aa10.43□□□□□ -0.74
LDLR-201ENST00000252444 U3KQE9 123 aa10.42□□□□□ -0.74
LDLR-201ENST00000252444 TRAV4A0A0B4J268 109 aa10.42□□□□□ -0.74
LDLR-201ENST00000252444 TIMM21Q9BVV7 248 aa10.42□□□□□ -0.74
LDLR-201ENST00000252444 TMEM213A2RRL7 107 aa10.42□□□□□ -0.74
LDLR-201ENST00000252444 CRXO43186 299 aaPredicted RBP10.42□□□□□ -0.74
LDLR-201ENST00000252444 ZFP2Q6ZN57 461 aa10.42□□□□□ -0.74
LDLR-201ENST00000252444 DLX4Q92988 240 aaPredicted RBP10.42□□□□□ -0.74
LDLR-201ENST00000252444 H7C423 109 aa10.41□□□□□ -0.74
LDLR-201ENST00000252444 K7EN84 100 aa10.41□□□□□ -0.74
LDLR-201ENST00000252444 SIGLEC8Q9NYZ4 499 aa10.41□□□□□ -0.74
LDLR-201ENST00000252444 ZNF815PA8K554 130 aa10.41□□□□□ -0.74
LDLR-201ENST00000252444 INAFM1C9JVW0 142 aa10.41□□□□□ -0.74
LDLR-201ENST00000252444 CCL25O15444 150 aa10.41□□□□□ -0.74
LDLR-201ENST00000252444 C17orf77Q96MU5 243 aa10.41□□□□□ -0.74
LDLR-201ENST00000252444 PSCAO43653 123 aa10.41□□□□□ -0.74
LDLR-201ENST00000252444 ZNF25P17030 456 aaPredicted RBP10.4□□□□□ -0.74
LDLR-201ENST00000252444 TOMM7Q9P0U1 55 aa10.4□□□□□ -0.74
LDLR-201ENST00000252444 TP53TG1Q9Y2A0 90 aa10.4□□□□□ -0.74
LDLR-201ENST00000252444 GAGE12JA6NER3 117 aa10.4□□□□□ -0.74
LDLR-201ENST00000252444 IGHV3-53P01767 116 aa10.4□□□□□ -0.74
LDLR-201ENST00000252444 GAGE1Q13065 139 aa10.4□□□□□ -0.74
LDLR-201ENST00000252444 GAGE4Q13068 117 aa10.4□□□□□ -0.74
LDLR-201ENST00000252444 GAGE5Q13069 117 aa10.4□□□□□ -0.74
LDLR-201ENST00000252444 GAGE13Q4V321 117 aa10.4□□□□□ -0.74
LDLR-201ENST00000252444 C1orf229Q6ZS94 237 aaPredicted RBP10.4□□□□□ -0.74
LDLR-201ENST00000252444 ASPHD1Q5U4P2 390 aa10.4□□□□□ -0.74
LDLR-201ENST00000252444 PIFOQ8TCI5 191 aa10.4□□□□□ -0.74
LDLR-201ENST00000252444 CACNA1GO43497 2377 aa10.4□□□□□ -0.75
LDLR-201ENST00000252444 TRAV12-2A0A075B6T6 113 aa10.39□□□□□ -0.75
LDLR-201ENST00000252444 C19orf71A6NCJ1 209 aa10.39□□□□□ -0.75
LDLR-201ENST00000252444 FAM110AQ9BQ89 295 aa10.39□□□□□ -0.75
LDLR-201ENST00000252444 TMEM61Q8N0U2 210 aa10.39□□□□□ -0.75
LDLR-201ENST00000252444 ZNRF2Q8NHG8 242 aa10.39□□□□□ -0.75
LDLR-201ENST00000252444 GAGE10A6NGK3 116 aa10.39□□□□□ -0.75
LDLR-201ENST00000252444 MIFP14174 115 aa10.39□□□□□ -0.75
LDLR-201ENST00000252444 SPATA25Q9BR10 227 aa10.39□□□□□ -0.75
LDLR-201ENST00000252444 DSCAMO60469 2012 aa10.39□□□□□ -0.75
LDLR-201ENST00000252444 LINC01006Q8NI28 216 aa10.38□□□□□ -0.75
LDLR-201ENST00000252444 PTPRQQ9UMZ3 2332 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms