RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 RNF185Q96GF1 192 aa9.94□□□□□ -0.82
CCDC88A-214ENST00000621814 TNFRSF6BO95407 300 aa9.93□□□□□ -0.82
CCDC88A-214ENST00000621814 TM4SF20Q53R12 229 aa9.93□□□□□ -0.82
CCDC88A-214ENST00000621814 AMMECR1LQ6DCA0 310 aa9.93□□□□□ -0.82
CCDC88A-214ENST00000621814 GLMPQ8WWB7 406 aa9.93□□□□□ -0.82
CCDC88A-214ENST00000621814 TRAV8-2A0A0B4J237 113 aa9.93□□□□□ -0.82
CCDC88A-214ENST00000621814 TRAV41A0A0B4J266 112 aa9.93□□□□□ -0.82
CCDC88A-214ENST00000621814 HIST1H1AQ02539 215 aaPredicted RBP9.93□□□□□ -0.82
CCDC88A-214ENST00000621814 IGHV4-39P01824 125 aa9.93□□□□□ -0.82
CCDC88A-214ENST00000621814 PAX8Q06710 450 aa9.93□□□□□ -0.82
CCDC88A-214ENST00000621814 SPANXN1Q5VSR9 72 aa9.93□□□□□ -0.82
CCDC88A-214ENST00000621814 UNQ9165/PRO28630Q6UXU0 137 aa9.93□□□□□ -0.82
CCDC88A-214ENST00000621814 C21orf62-AS1Q17RA5 79 aa9.92□□□□□ -0.82
CCDC88A-214ENST00000621814 C2orf91Q6ZV80 131 aa9.92□□□□□ -0.82
CCDC88A-214ENST00000621814 PCP2Q8IVA1 136 aa9.92□□□□□ -0.82
CCDC88A-214ENST00000621814 ITLN2Q8WWU7 325 aaPredicted RBP9.92□□□□□ -0.82
CCDC88A-214ENST00000621814 TTTY13Q9BZ97 58 aa9.92□□□□□ -0.82
CCDC88A-214ENST00000621814 SRD5A1P18405 259 aa9.92□□□□□ -0.82
CCDC88A-214ENST00000621814 ARL3P36405 182 aa9.92□□□□□ -0.82
CCDC88A-214ENST00000621814 RNASE8Q8TDE3 154 aaKnown RBP9.92□□□□□ -0.82
CCDC88A-214ENST00000621814 SLC50A1Q9BRV3 221 aa9.92□□□□□ -0.82
CCDC88A-214ENST00000621814 FBLL1A6NHQ2 334 aaKnown RBP9.91□□□□□ -0.82
CCDC88A-214ENST00000621814 H3BVH4 76 aa9.91□□□□□ -0.82
CCDC88A-214ENST00000621814 TRBV7-1A0A0A6YYK4 115 aa9.91□□□□□ -0.82
CCDC88A-214ENST00000621814 RAB9AP51151 201 aa9.91□□□□□ -0.82
CCDC88A-214ENST00000621814 RNF151Q2KHN1 245 aa9.91□□□□□ -0.82
CCDC88A-214ENST00000621814 DEFB104AQ8WTQ1 72 aa9.91□□□□□ -0.82
CCDC88A-214ENST00000621814 TMEM190Q8WZ59 177 aa9.91□□□□□ -0.82
CCDC88A-214ENST00000621814 RAB37Q96AX2 223 aa9.91□□□□□ -0.82
CCDC88A-214ENST00000621814 HIF1ANQ9NWT6 349 aa9.91□□□□□ -0.82
CCDC88A-214ENST00000621814 UTP20O75691 2785 aaKnown RBP9.91□□□□□ -0.82
CCDC88A-214ENST00000621814 C7orf71A4D174 169 aa9.91□□□□□ -0.82
CCDC88A-214ENST00000621814 SMAD7O15105 426 aaKnown RBP9.91□□□□□ -0.82
CCDC88A-214ENST00000621814 IGHV4-38-2P0DP08 117 aa9.91□□□□□ -0.82
CCDC88A-214ENST00000621814 DEFB125Q8N687 156 aa9.91□□□□□ -0.82
CCDC88A-214ENST00000621814 WFDC12Q8WWY7 111 aa9.91□□□□□ -0.82
CCDC88A-214ENST00000621814 IGHV4-61A0A0C4DH41 118 aa9.9□□□□□ -0.82
CCDC88A-214ENST00000621814 M0R381 172 aa9.9□□□□□ -0.82
CCDC88A-214ENST00000621814 TMEM97Q5BJF2 176 aa9.9□□□□□ -0.82
CCDC88A-214ENST00000621814 COX8CQ7Z4L0 72 aa9.9□□□□□ -0.82
CCDC88A-214ENST00000621814 TMEM158Q8WZ71 300 aa9.9□□□□□ -0.82
CCDC88A-214ENST00000621814 F6UB75 175 aa9.9□□□□□ -0.83
CCDC88A-214ENST00000621814 PF4V1P10720 104 aa9.9□□□□□ -0.83
CCDC88A-214ENST00000621814 LGALS9BQ3B8N2 356 aa9.9□□□□□ -0.83
CCDC88A-214ENST00000621814 LINC01559Q495D7 138 aa9.9□□□□□ -0.83
CCDC88A-214ENST00000621814 LGALS9CQ6DKI2 356 aa9.9□□□□□ -0.83
CCDC88A-214ENST00000621814 SMIM15Q7Z3B0 74 aa9.9□□□□□ -0.83
CCDC88A-214ENST00000621814 C20orf173Q96LM9 149 aa9.9□□□□□ -0.83
CCDC88A-214ENST00000621814 KLK15Q9H2R5 256 aa9.9□□□□□ -0.83
CCDC88A-214ENST00000621814 MOB4Q9Y3A3 225 aa9.9□□□□□ -0.83
CCDC88A-214ENST00000621814 BLCAPP62952 87 aa9.89□□□□□ -0.83
CCDC88A-214ENST00000621814 PRR9Q5T870 116 aa9.89□□□□□ -0.83
CCDC88A-214ENST00000621814 FOXC2Q99958 501 aa9.89□□□□□ -0.83
CCDC88A-214ENST00000621814 Q6ZS46 218 aa9.89□□□□□ -0.83
CCDC88A-214ENST00000621814 TRAV8-6A0A0B4J262 113 aa9.88□□□□□ -0.83
CCDC88A-214ENST00000621814 H3BUX3 64 aa9.88□□□□□ -0.83
CCDC88A-214ENST00000621814 CSPG4Q6UVK1 2322 aa9.88□□□□□ -0.83
CCDC88A-214ENST00000621814 S100A4P26447 101 aaKnown RBP9.88□□□□□ -0.83
CCDC88A-214ENST00000621814 KIR3DS1Q14943 382 aa9.88□□□□□ -0.83
CCDC88A-214ENST00000621814 TMEM160Q9NX00 188 aa9.88□□□□□ -0.83
CCDC88A-214ENST00000621814 IGHV1-69DA0A0B4J2H0 117 aa9.88□□□□□ -0.83
CCDC88A-214ENST00000621814 A1L4Q6 167 aa9.88□□□□□ -0.83
CCDC88A-214ENST00000621814 IGHV1-69P01742 117 aa9.88□□□□□ -0.83
CCDC88A-214ENST00000621814 FGF6P10767 208 aa9.88□□□□□ -0.83
CCDC88A-214ENST00000621814 GTSCR1Q86UQ5 136 aa9.88□□□□□ -0.83
CCDC88A-214ENST00000621814 OR2K2Q8NGT1 345 aa9.88□□□□□ -0.83
CCDC88A-214ENST00000621814 PIFOQ8TCI5 191 aa9.88□□□□□ -0.83
CCDC88A-214ENST00000621814 PPBPP02775 128 aa9.87□□□□□ -0.83
CCDC88A-214ENST00000621814 ARL6IP6Q8N6S5 226 aa9.87□□□□□ -0.83
CCDC88A-214ENST00000621814 RBAKDNA6NC62 111 aa9.87□□□□□ -0.83
CCDC88A-214ENST00000621814 AP1S3Q96PC3 154 aa9.87□□□□□ -0.83
CCDC88A-214ENST00000621814 IGHV7-4-1A0A0J9YVY3 117 aa9.86□□□□□ -0.83
CCDC88A-214ENST00000621814 CD5LO43866 347 aa9.86□□□□□ -0.83
CCDC88A-214ENST00000621814 FCER1GP30273 86 aa9.86□□□□□ -0.83
CCDC88A-214ENST00000621814 RNASE4P34096 147 aaKnown RBP9.86□□□□□ -0.83
CCDC88A-214ENST00000621814 CCL19Q99731 98 aa9.86□□□□□ -0.83
CCDC88A-214ENST00000621814 NXT2Q9NPJ8 142 aaKnown RBP9.86□□□□□ -0.83
CCDC88A-214ENST00000621814 IGKV2D-26A0A0A0MRZ7 120 aa9.86□□□□□ -0.83
CCDC88A-214ENST00000621814 ABCA2Q9BZC7 2435 aa9.86□□□□□ -0.83
CCDC88A-214ENST00000621814 K7EMI3 77 aa9.86□□□□□ -0.83
CCDC88A-214ENST00000621814 K7EP13 123 aa9.86□□□□□ -0.83
CCDC88A-214ENST00000621814 SMIM17P0DL12 118 aa9.86□□□□□ -0.83
CCDC88A-214ENST00000621814 ATP5J2P56134 94 aa9.86□□□□□ -0.83
CCDC88A-214ENST00000621814 NRGNQ92686 78 aa9.86□□□□□ -0.83
CCDC88A-214ENST00000621814 CNFNQ9BYD5 112 aa9.86□□□□□ -0.83
CCDC88A-214ENST00000621814 FLNCQ14315 2725 aa9.86□□□□□ -0.83
CCDC88A-214ENST00000621814 PKD1L2Q7Z442 2459 aa9.85□□□□□ -0.83
CCDC88A-214ENST00000621814 H3BUT2 72 aa9.85□□□□□ -0.83
CCDC88A-214ENST00000621814 EDN2P20800 178 aa9.85□□□□□ -0.83
CCDC88A-214ENST00000621814 BOD1L2Q8IYS8 172 aa9.85□□□□□ -0.83
CCDC88A-214ENST00000621814 C14orf178Q8N769 122 aaPredicted RBP9.85□□□□□ -0.83
CCDC88A-214ENST00000621814 CBY1Q9Y3M2 126 aa9.85□□□□□ -0.83
CCDC88A-214ENST00000621814 MGPP08493 103 aa9.85□□□□□ -0.83
CCDC88A-214ENST00000621814 TMEM95Q3KNT9 176 aa9.85□□□□□ -0.83
CCDC88A-214ENST00000621814 OR10J6PQ8NGY7 276 aa9.85□□□□□ -0.83
CCDC88A-214ENST00000621814 PIMREGQ9BSJ6 248 aa9.85□□□□□ -0.83
CCDC88A-214ENST00000621814 CENPEQ02224 2701 aa9.84□□□□□ -0.83
CCDC88A-214ENST00000621814 TMEM8BA6NDV4 472 aa9.84□□□□□ -0.83
CCDC88A-214ENST00000621814 OR4X2Q8NGF9 303 aa9.84□□□□□ -0.83
CCDC88A-214ENST00000621814 CFAP46Q8IYW2 2715 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms