RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 SLAQ13239 276 aa13.23□□□□□ -0.29
CCDC28A-203ENST00000617445 FAM74A1Q5RGS3 127 aa13.23□□□□□ -0.29
CCDC28A-203ENST00000617445 PRR9Q5T870 116 aa13.23□□□□□ -0.29
CCDC28A-203ENST00000617445 PQLC2Q6ZP29 291 aa13.23□□□□□ -0.29
CCDC28A-203ENST00000617445 KLF12Q9Y4X4 402 aa13.23□□□□□ -0.29
CCDC28A-203ENST00000617445 HERC2O95714 4834 aa13.22□□□□□ -0.29
CCDC28A-203ENST00000617445 A0A1W2PPV4 95 aa13.22□□□□□ -0.29
CCDC28A-203ENST00000617445 DIRC3C9JPN6 131 aa13.22□□□□□ -0.29
CCDC28A-203ENST00000617445 BTF3P20290 206 aaKnown RBP13.22□□□□□ -0.29
CCDC28A-203ENST00000617445 ESRGQ1W209 222 aa13.22□□□□□ -0.29
CCDC28A-203ENST00000617445 ST6GAL2Q96JF0 529 aa13.22□□□□□ -0.29
CCDC28A-203ENST00000617445 OTORQ9NRC9 128 aa13.22□□□□□ -0.29
CCDC28A-203ENST00000617445 MRPS16Q9Y3D3 137 aaKnown RBP13.22□□□□□ -0.29
CCDC28A-203ENST00000617445 A0A1W2PPQ1 181 aa13.21□□□□□ -0.29
CCDC28A-203ENST00000617445 ZNF415Q09FC8 603 aa13.21□□□□□ -0.29
CCDC28A-203ENST00000617445 RGS21Q2M5E4 152 aa13.21□□□□□ -0.29
CCDC28A-203ENST00000617445 Q8TAT8 98 aa13.21□□□□□ -0.29
CCDC28A-203ENST00000617445 CMTM2Q8TAZ6 248 aa13.21□□□□□ -0.29
CCDC28A-203ENST00000617445 VSIG2Q96IQ7 327 aa13.21□□□□□ -0.29
CCDC28A-203ENST00000617445 WFDC1Q9HC57 220 aa13.21□□□□□ -0.29
CCDC28A-203ENST00000617445 TP53TG3Q9ULZ0 132 aa13.21□□□□□ -0.29
CCDC28A-203ENST00000617445 PKD1P98161 4303 aa13.21□□□□□ -0.29
CCDC28A-203ENST00000617445 Q6AWC8 147 aa13.2□□□□□ -0.3
CCDC28A-203ENST00000617445 ASB13Q8WXK3 278 aa13.2□□□□□ -0.3
CCDC28A-203ENST00000617445 A0A096LPF7 62 aa13.19□□□□□ -0.3
CCDC28A-203ENST00000617445 PGPA6NDG6 321 aa13.19□□□□□ -0.3
CCDC28A-203ENST00000617445 PRO0255Q9UI72 69 aa13.19□□□□□ -0.3
CCDC28A-203ENST00000617445 PAX4O43316 350 aa13.18□□□□□ -0.3
CCDC28A-203ENST00000617445 TNP2Q05952 138 aa13.18□□□□□ -0.3
CCDC28A-203ENST00000617445 FAM159AQ6UWV7 190 aa13.18□□□□□ -0.3
CCDC28A-203ENST00000617445 Q6ZQT7 251 aa13.18□□□□□ -0.3
CCDC28A-203ENST00000617445 HYLS1Q96M11 299 aa13.18□□□□□ -0.3
CCDC28A-203ENST00000617445 SPXQ9BT56 116 aa13.18□□□□□ -0.3
CCDC28A-203ENST00000617445 ICOSQ9Y6W8 199 aa13.18□□□□□ -0.3
CCDC28A-203ENST00000617445 KIAA1109Q2LD37 5005 aa13.18□□□□□ -0.3
CCDC28A-203ENST00000617445 TRGV11A0A075B6L2 103 aa13.17□□□□□ -0.3
CCDC28A-203ENST00000617445 OR10G4Q8NGN3 311 aa13.17□□□□□ -0.3
CCDC28A-203ENST00000617445 OR10G9Q8NGN4 311 aa13.17□□□□□ -0.3
CCDC28A-203ENST00000617445 OR10G7Q8NGN6 311 aa13.17□□□□□ -0.3
CCDC28A-203ENST00000617445 MRPL16Q9NX20 251 aaKnown RBP13.17□□□□□ -0.3
CCDC28A-203ENST00000617445 GIPP09681 153 aaPredicted RBP13.16□□□□□ -0.3
CCDC28A-203ENST00000617445 TDRG1Q3Y452 100 aa13.16□□□□□ -0.3
CCDC28A-203ENST00000617445 OR2G3Q8NGZ4 309 aa13.16□□□□□ -0.3
CCDC28A-203ENST00000617445 HHLA3Q9XRX5 114 aa13.16□□□□□ -0.3
CCDC28A-203ENST00000617445 DNAH11Q96DT5 4516 aa13.15□□□□□ -0.3
CCDC28A-203ENST00000617445 MBP02144 154 aa13.15□□□□□ -0.3
CCDC28A-203ENST00000617445 RAB2AP61019 212 aa13.15□□□□□ -0.3
CCDC28A-203ENST00000617445 MUC21Q5SSG8 566 aa13.15□□□□□ -0.3
CCDC28A-203ENST00000617445 IQCF2Q8IXL9 164 aa13.15□□□□□ -0.3
CCDC28A-203ENST00000617445 RASL10AQ92737 203 aa13.15□□□□□ -0.3
CCDC28A-203ENST00000617445 AQP10Q96PS8 301 aa13.15□□□□□ -0.3
CCDC28A-203ENST00000617445 PSMG3Q9BT73 122 aaPredicted RBP13.15□□□□□ -0.3
CCDC28A-203ENST00000617445 SERTM2A0A1B0GWG4 89 aa13.14□□□□□ -0.31
CCDC28A-203ENST00000617445 CRYBA4P53673 196 aa13.14□□□□□ -0.31
CCDC28A-203ENST00000617445 SERF2P84101 59 aa13.14□□□□□ -0.31
CCDC28A-203ENST00000617445 FHL2Q14192 279 aa13.14□□□□□ -0.31
CCDC28A-203ENST00000617445 MRPL23Q16540 153 aaKnown RBP13.14□□□□□ -0.31
CCDC28A-203ENST00000617445 GOLT1AQ6ZVE7 132 aa13.14□□□□□ -0.31
CCDC28A-203ENST00000617445 KRTAP17-1Q9BYP8 105 aa13.14□□□□□ -0.31
CCDC28A-203ENST00000617445 MDFICQ9P1T7 246 aa13.14□□□□□ -0.31
CCDC28A-203ENST00000617445 TRAV21A0A0B4J279 112 aa13.13□□□□□ -0.31
CCDC28A-203ENST00000617445 IGHV3-53P01767 116 aa13.13□□□□□ -0.31
CCDC28A-203ENST00000617445 CDC34P49427 236 aaPredicted RBP13.13□□□□□ -0.31
CCDC28A-203ENST00000617445 TMEM183BQ1AE95 376 aa13.13□□□□□ -0.31
CCDC28A-203ENST00000617445 ZNF575Q86XF7 245 aa13.13□□□□□ -0.31
CCDC28A-203ENST00000617445 TMEM183AQ8IXX5 376 aa13.13□□□□□ -0.31
CCDC28A-203ENST00000617445 RPH3ALQ9UNE2 315 aa13.13□□□□□ -0.31
CCDC28A-203ENST00000617445 TRGV4A0A0C4DH28 118 aa13.12□□□□□ -0.31
CCDC28A-203ENST00000617445 SIVA1O15304 175 aa13.12□□□□□ -0.31
CCDC28A-203ENST00000617445 STAG3L2P0CL84 134 aa13.12□□□□□ -0.31
CCDC28A-203ENST00000617445 STAG3L3P0CL85 134 aa13.12□□□□□ -0.31
CCDC28A-203ENST00000617445 ARL14EPLP0DKL9 152 aa13.12□□□□□ -0.31
CCDC28A-203ENST00000617445 KRTAP1-5Q9BYS1 174 aa13.12□□□□□ -0.31
CCDC28A-203ENST00000617445 TREM1Q9NP99 234 aa13.12□□□□□ -0.31
CCDC28A-203ENST00000617445 C16orf90A8MZG2 172 aa13.11□□□□□ -0.31
CCDC28A-203ENST00000617445 K7EQM0 130 aa13.11□□□□□ -0.31
CCDC28A-203ENST00000617445 EIF3GO75821 320 aaKnown RBP eCLIP13.11□□□□□ -0.31
CCDC28A-203ENST00000617445 HSD17B11Q8NBQ5 300 aa13.11□□□□□ -0.31
CCDC28A-203ENST00000617445 SUN5Q8TC36 379 aa13.11□□□□□ -0.31
CCDC28A-203ENST00000617445 KCNS1Q96KK3 526 aa13.11□□□□□ -0.31
CCDC28A-203ENST00000617445 C8orf49Q96NF6 230 aa13.11□□□□□ -0.31
CCDC28A-203ENST00000617445 NDFIP1Q9BT67 221 aa13.11□□□□□ -0.31
CCDC28A-203ENST00000617445 M0R2P5 195 aa13.1□□□□□ -0.31
CCDC28A-203ENST00000617445 ATP6V0CP27449 155 aa13.1□□□□□ -0.31
CCDC28A-203ENST00000617445 Q5BKY6 102 aa13.1□□□□□ -0.31
CCDC28A-203ENST00000617445 NEGR1Q7Z3B1 354 aa13.1□□□□□ -0.31
CCDC28A-203ENST00000617445 C5orf17Q8NAS9 161 aa13.1□□□□□ -0.31
CCDC28A-203ENST00000617445 INO80EQ8NBZ0 244 aaPredicted RBP13.1□□□□□ -0.31
CCDC28A-203ENST00000617445 RAB24Q969Q5 203 aa13.1□□□□□ -0.31
CCDC28A-203ENST00000617445 NAGKQ9UJ70 344 aa13.1□□□□□ -0.31
CCDC28A-203ENST00000617445 TNFSF18Q9UNG2 199 aa13.1□□□□□ -0.31
CCDC28A-203ENST00000617445 DYNC1H1Q14204 4646 aaKnown RBP13.09□□□□□ -0.31
CCDC28A-203ENST00000617445 HMGB3O15347 200 aaKnown RBP13.09□□□□□ -0.31
CCDC28A-203ENST00000617445 ORM1P02763 201 aa13.09□□□□□ -0.31
CCDC28A-203ENST00000617445 LYPD5Q6UWN5 251 aa13.09□□□□□ -0.31
CCDC28A-203ENST00000617445 OR2T35Q8NGX2 323 aa13.09□□□□□ -0.31
CCDC28A-203ENST00000617445 SDF2L1Q9HCN8 221 aa13.09□□□□□ -0.31
CCDC28A-203ENST00000617445 TMEM167BQ9NRX6 74 aa13.09□□□□□ -0.31
CCDC28A-203ENST00000617445 TRAV4A0A0B4J268 109 aa13.08□□□□□ -0.32
CCDC28A-203ENST00000617445 IGHV3-16A0A0C4DH30 117 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms