RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 RPS10P5Q9NQ39 176 aa11.43□□□□□ -0.58
UPF1-206ENST00000598471 OSTCQ9NRP0 149 aa11.43□□□□□ -0.58
UPF1-206ENST00000598471 VWFP04275 2813 aa11.43□□□□□ -0.58
UPF1-206ENST00000598471 CMYA5Q8N3K9 4069 aa11.43□□□□□ -0.58
UPF1-206ENST00000598471 C7orf77A4D0Y5 90 aa11.42□□□□□ -0.58
UPF1-206ENST00000598471 P01737 135 aa11.42□□□□□ -0.58
UPF1-206ENST00000598471 AMBPP02760 352 aa11.42□□□□□ -0.58
UPF1-206ENST00000598471 CDKN1BP46527 198 aa11.42□□□□□ -0.58
UPF1-206ENST00000598471 NUTF2P61970 127 aaKnown RBP11.42□□□□□ -0.58
UPF1-206ENST00000598471 EGFEM1PQ0D2K5 195 aa11.42□□□□□ -0.58
UPF1-206ENST00000598471 TRPT1Q86TN4 253 aaKnown RBP11.42□□□□□ -0.58
UPF1-206ENST00000598471 ZFAND2AQ8N6M9 145 aa11.42□□□□□ -0.58
UPF1-206ENST00000598471 CTDSP1Q9GZU7 261 aa11.42□□□□□ -0.58
UPF1-206ENST00000598471 A0A087WWC5 75 aa11.41□□□□□ -0.58
UPF1-206ENST00000598471 FABP5P3A8MUU1 101 aa11.41□□□□□ -0.58
UPF1-206ENST00000598471 H7BYZ3 331 aa11.41□□□□□ -0.58
UPF1-206ENST00000598471 J3KRW8 73 aa11.41□□□□□ -0.58
UPF1-206ENST00000598471 GATCO43716 136 aaKnown RBP11.41□□□□□ -0.58
UPF1-206ENST00000598471 RNF212Q495C1 297 aa11.41□□□□□ -0.58
UPF1-206ENST00000598471 AMTNQ6UX39 209 aa11.41□□□□□ -0.58
UPF1-206ENST00000598471 RNASE7Q9H1E1 156 aaKnown RBP11.41□□□□□ -0.58
UPF1-206ENST00000598471 TRAV21A0A0B4J279 112 aa11.4□□□□□ -0.58
UPF1-206ENST00000598471 KLLNB2CW77 178 aa11.4□□□□□ -0.58
UPF1-206ENST00000598471 SH2D1AO60880 128 aa11.4□□□□□ -0.58
UPF1-206ENST00000598471 PFN1P07737 140 aaKnown RBP11.4□□□□□ -0.58
UPF1-206ENST00000598471 RNASE4P34096 147 aaKnown RBP11.4□□□□□ -0.58
UPF1-206ENST00000598471 SPINK13Q1W4C9 94 aa11.4□□□□□ -0.58
UPF1-206ENST00000598471 DEFB125Q8N687 156 aa11.4□□□□□ -0.58
UPF1-206ENST00000598471 NUDT10Q8NFP7 164 aa11.4□□□□□ -0.58
UPF1-206ENST00000598471 NUDT11Q96G61 164 aa11.4□□□□□ -0.58
UPF1-206ENST00000598471 WFDC10AQ9H1F0 79 aa11.4□□□□□ -0.58
UPF1-206ENST00000598471 C7orf71A4D174 169 aa11.39□□□□□ -0.59
UPF1-206ENST00000598471 C19orf71A6NCJ1 209 aa11.39□□□□□ -0.59
UPF1-206ENST00000598471 ZNF705GA8MUZ8 300 aaPredicted RBP11.39□□□□□ -0.59
UPF1-206ENST00000598471 M0R2Z0 102 aa11.39□□□□□ -0.59
UPF1-206ENST00000598471 SAMD5Q5TGI4 173 aa11.39□□□□□ -0.59
UPF1-206ENST00000598471 MORN3Q6PF18 240 aaPredicted RBP11.39□□□□□ -0.59
UPF1-206ENST00000598471 RPP21Q9H633 154 aaKnown RBP11.39□□□□□ -0.59
UPF1-206ENST00000598471 SRD5A3Q9H8P0 318 aa11.39□□□□□ -0.59
UPF1-206ENST00000598471 NOTCH3Q9UM47 2321 aa11.38□□□□□ -0.59
UPF1-206ENST00000598471 XKRY2A2RUG3 117 aa11.38□□□□□ -0.59
UPF1-206ENST00000598471 RBMY1BA6NDE4 496 aaKnown RBP11.38□□□□□ -0.59
UPF1-206ENST00000598471 RBMY1EA6NEQ0 496 aaKnown RBP11.38□□□□□ -0.59
UPF1-206ENST00000598471 G3V4G9 280 aa11.38□□□□□ -0.59
UPF1-206ENST00000598471 RBMY1DP0C7P1 496 aaKnown RBP11.38□□□□□ -0.59
UPF1-206ENST00000598471 CRIP1P50238 77 aa11.38□□□□□ -0.59
UPF1-206ENST00000598471 ZNF80P51504 273 aaPredicted RBP11.38□□□□□ -0.59
UPF1-206ENST00000598471 BTN1A1Q13410 526 aa11.38□□□□□ -0.59
UPF1-206ENST00000598471 PRR9Q5T870 116 aa11.38□□□□□ -0.59
UPF1-206ENST00000598471 GFI1BQ5VTD9 330 aa11.38□□□□□ -0.59
UPF1-206ENST00000598471 Q6AWC8 147 aa11.38□□□□□ -0.59
UPF1-206ENST00000598471 ATRAIDQ6UW56 229 aa11.38□□□□□ -0.59
UPF1-206ENST00000598471 LINC00322Q6ZN03 302 aaPredicted RBP11.38□□□□□ -0.59
UPF1-206ENST00000598471 TMEM242Q9NWH2 141 aa11.38□□□□□ -0.59
UPF1-206ENST00000598471 TMEM189A5PLL7 270 aa11.37□□□□□ -0.59
UPF1-206ENST00000598471 INSP01308 110 aa11.37□□□□□ -0.59
UPF1-206ENST00000598471 RPL35AP18077 110 aaKnown RBP11.37□□□□□ -0.59
UPF1-206ENST00000598471 RPS20P60866 119 aaKnown RBP11.37□□□□□ -0.59
UPF1-206ENST00000598471 CT83Q5H943 113 aa11.37□□□□□ -0.59
UPF1-206ENST00000598471 Q8N1Y9 231 aa11.37□□□□□ -0.59
UPF1-206ENST00000598471 OR2D3Q8NGH3 330 aa11.37□□□□□ -0.59
UPF1-206ENST00000598471 C1QTNF4Q9BXJ3 329 aa11.37□□□□□ -0.59
UPF1-206ENST00000598471 TUBA4BQ9H853 241 aa11.37□□□□□ -0.59
UPF1-206ENST00000598471 SORL1Q92673 2214 aa11.37□□□□□ -0.59
UPF1-206ENST00000598471 TRAV12-2A0A075B6T6 113 aa11.36□□□□□ -0.59
UPF1-206ENST00000598471 A8MWL6 223 aa11.36□□□□□ -0.59
UPF1-206ENST00000598471 ORM1P02763 201 aa11.36□□□□□ -0.59
UPF1-206ENST00000598471 FXYD7P58549 80 aa11.36□□□□□ -0.59
UPF1-206ENST00000598471 KRTAP10-11P60412 298 aa11.36□□□□□ -0.59
UPF1-206ENST00000598471 C20orf144Q9BQM9 153 aa11.36□□□□□ -0.59
UPF1-206ENST00000598471 SMCO4Q9NRQ5 59 aa11.36□□□□□ -0.59
UPF1-206ENST00000598471 V9GYV3 84 aa11.36□□□□□ -0.59
UPF1-206ENST00000598471 LOC102724200A0A096LPH7 203 aaPredicted RBP11.35□□□□□ -0.59
UPF1-206ENST00000598471 TRAV12-3A0A0B4J271 114 aa11.35□□□□□ -0.59
UPF1-206ENST00000598471 CXorf65A6NEN9 183 aa11.35□□□□□ -0.59
UPF1-206ENST00000598471 S100PP25815 95 aa11.35□□□□□ -0.59
UPF1-206ENST00000598471 KIR3DS1Q14943 382 aa11.35□□□□□ -0.59
UPF1-206ENST00000598471 LINC01559Q495D7 138 aa11.35□□□□□ -0.59
UPF1-206ENST00000598471 KCNIP4Q6PIL6 250 aa11.35□□□□□ -0.59
UPF1-206ENST00000598471 NAGKQ9UJ70 344 aa11.35□□□□□ -0.59
UPF1-206ENST00000598471 FAM159AQ6UWV7 190 aa11.34□□□□□ -0.59
UPF1-206ENST00000598471 KCNS1Q96KK3 526 aa11.34□□□□□ -0.59
UPF1-206ENST00000598471 IMMP2LQ96T52 175 aa11.34□□□□□ -0.59
UPF1-206ENST00000598471 IL36BQ9NZH7 164 aa11.34□□□□□ -0.59
UPF1-206ENST00000598471 CRXO43186 299 aaPredicted RBP11.33□□□□□ -0.6
UPF1-206ENST00000598471 APOC4P55056 127 aa11.33□□□□□ -0.6
UPF1-206ENST00000598471 TSKUQ8WUA8 353 aa11.33□□□□□ -0.6
UPF1-206ENST00000598471 CSTL1Q9H114 145 aa11.33□□□□□ -0.6
UPF1-206ENST00000598471 XCL2Q9UBD3 114 aa11.33□□□□□ -0.6
UPF1-206ENST00000598471 TMSB15BA0A087X1C1 80 aa11.32□□□□□ -0.6
UPF1-206ENST00000598471 KIR2DL5BA0A0G2JN68 375 aa11.32□□□□□ -0.6
UPF1-206ENST00000598471 KIR2DL5BA0A0G2JPC4 375 aa11.32□□□□□ -0.6
UPF1-206ENST00000598471 FAM231BA6NCW3 169 aa11.32□□□□□ -0.6
UPF1-206ENST00000598471 ZNF324O75467 553 aaPredicted RBP11.32□□□□□ -0.6
UPF1-206ENST00000598471 SCO1O75880 301 aa11.32□□□□□ -0.6
UPF1-206ENST00000598471 CA1P00915 261 aaPredicted RBP11.32□□□□□ -0.6
UPF1-206ENST00000598471 CXCL1P09341 107 aa11.32□□□□□ -0.6
UPF1-206ENST00000598471 IGHV4-30-4P0DP06 118 aa11.32□□□□□ -0.6
UPF1-206ENST00000598471 RPL19P84098 196 aaKnown RBP11.32□□□□□ -0.6
UPF1-206ENST00000598471 KIR2DL5AQ8N109 375 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms