RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 H7BYZ3 331 aa9.39□□□□□ -0.91
SHKBP1-208ENST00000595726 J3KRW8 73 aa9.39□□□□□ -0.91
SHKBP1-208ENST00000595726 HTN1P15515 57 aa9.39□□□□□ -0.91
SHKBP1-208ENST00000595726 LEPP41159 167 aa9.39□□□□□ -0.91
SHKBP1-208ENST00000595726 UBE2L3P68036 154 aaKnown RBP9.39□□□□□ -0.91
SHKBP1-208ENST00000595726 ERCC8Q13216 396 aa9.39□□□□□ -0.91
SHKBP1-208ENST00000595726 KHDC3LQ587J8 217 aa9.39□□□□□ -0.91
SHKBP1-208ENST00000595726 FAM122CQ6P4D5 195 aa9.39□□□□□ -0.91
SHKBP1-208ENST00000595726 RNASE8Q8TDE3 154 aaKnown RBP9.39□□□□□ -0.91
SHKBP1-208ENST00000595726 C16orf74Q96GX8 76 aa9.39□□□□□ -0.91
SHKBP1-208ENST00000595726 PLA2G2DQ9UNK4 145 aa9.39□□□□□ -0.91
SHKBP1-208ENST00000595726 IGKV2-40A0A087WW87 121 aaPredicted RBP9.38□□□□□ -0.91
SHKBP1-208ENST00000595726 EIF3GO75821 320 aaKnown RBP eCLIP9.38□□□□□ -0.91
SHKBP1-208ENST00000595726 IGKV2D-40P01614 121 aaPredicted RBP9.38□□□□□ -0.91
SHKBP1-208ENST00000595726 M6PRP20645 277 aa9.38□□□□□ -0.91
SHKBP1-208ENST00000595726 HOXA5P20719 270 aa9.38□□□□□ -0.91
SHKBP1-208ENST00000595726 TAS2R45P59539 299 aa9.38□□□□□ -0.91
SHKBP1-208ENST00000595726 ZNF266Q14584 549 aa9.38□□□□□ -0.91
SHKBP1-208ENST00000595726 TMEM263Q8WUH6 116 aaKnown RBP9.38□□□□□ -0.91
SHKBP1-208ENST00000595726 FAM19A4Q96LR4 140 aa9.38□□□□□ -0.91
SHKBP1-208ENST00000595726 NOP10Q9NPE3 64 aaKnown RBP9.38□□□□□ -0.91
SHKBP1-208ENST00000595726 TRAV12-3A0A0B4J271 114 aa9.37□□□□□ -0.91
SHKBP1-208ENST00000595726 RAB2AP61019 212 aa9.37□□□□□ -0.91
SHKBP1-208ENST00000595726 ACOT6Q3I5F7 207 aaPredicted RBP9.37□□□□□ -0.91
SHKBP1-208ENST00000595726 C9orf47Q6ZRZ4 202 aa9.37□□□□□ -0.91
SHKBP1-208ENST00000595726 LINC00477Q96M19 166 aa9.37□□□□□ -0.91
SHKBP1-208ENST00000595726 AGPAT4-IT1Q9H0P7 198 aa9.37□□□□□ -0.91
SHKBP1-208ENST00000595726 RNF222A6NCQ9 220 aa9.36□□□□□ -0.91
SHKBP1-208ENST00000595726 KLLNB2CW77 178 aa9.36□□□□□ -0.91
SHKBP1-208ENST00000595726 SLC25A5P05141 298 aaKnown RBP9.36□□□□□ -0.91
SHKBP1-208ENST00000595726 TMEM78Q5T7P6 136 aa9.36□□□□□ -0.91
SHKBP1-208ENST00000595726 ZNF493Q6ZR52 646 aa9.36□□□□□ -0.91
SHKBP1-208ENST00000595726 HSD17B11Q8NBQ5 300 aa9.36□□□□□ -0.91
SHKBP1-208ENST00000595726 OR2G3Q8NGZ4 309 aa9.36□□□□□ -0.91
SHKBP1-208ENST00000595726 VGLL1Q99990 258 aa9.36□□□□□ -0.91
SHKBP1-208ENST00000595726 TIMM8BQ9Y5J9 83 aaPredicted RBP9.36□□□□□ -0.91
SHKBP1-208ENST00000595726 FXYD6-FXYD2A0A087WZ82 144 aa9.35□□□□□ -0.91
SHKBP1-208ENST00000595726 A0A1W2PPV4 95 aa9.35□□□□□ -0.91
SHKBP1-208ENST00000595726 C7orf71A4D174 169 aa9.35□□□□□ -0.91
SHKBP1-208ENST00000595726 G3V3Q6 166 aa9.35□□□□□ -0.91
SHKBP1-208ENST00000595726 CRISP2P16562 243 aa9.35□□□□□ -0.91
SHKBP1-208ENST00000595726 ATP6V0CP27449 155 aa9.35□□□□□ -0.91
SHKBP1-208ENST00000595726 RANP62826 216 aaKnown RBP9.35□□□□□ -0.91
SHKBP1-208ENST00000595726 BTN1A1Q13410 526 aa9.35□□□□□ -0.91
SHKBP1-208ENST00000595726 PQLC2Q6ZP29 291 aa9.35□□□□□ -0.91
SHKBP1-208ENST00000595726 OR10G4Q8NGN3 311 aa9.35□□□□□ -0.91
SHKBP1-208ENST00000595726 OR10G9Q8NGN4 311 aa9.35□□□□□ -0.91
SHKBP1-208ENST00000595726 OR10G7Q8NGN6 311 aa9.35□□□□□ -0.91
SHKBP1-208ENST00000595726 OR2T35Q8NGX2 323 aa9.35□□□□□ -0.91
SHKBP1-208ENST00000595726 PYGO2Q9BRQ0 406 aa9.35□□□□□ -0.91
SHKBP1-208ENST00000595726 PSMG3Q9BT73 122 aaPredicted RBP9.35□□□□□ -0.91
SHKBP1-208ENST00000595726 TNFSF18Q9UNG2 199 aa9.35□□□□□ -0.91
SHKBP1-208ENST00000595726 SIVA1O15304 175 aa9.34□□□□□ -0.91
SHKBP1-208ENST00000595726 CD300CQ08708 224 aa9.34□□□□□ -0.91
SHKBP1-208ENST00000595726 PRR9Q5T870 116 aa9.34□□□□□ -0.91
SHKBP1-208ENST00000595726 CCDC28AQ8IWP9 274 aa9.34□□□□□ -0.91
SHKBP1-208ENST00000595726 ZFAND2AQ8N6M9 145 aa9.34□□□□□ -0.91
SHKBP1-208ENST00000595726 INO80EQ8NBZ0 244 aaPredicted RBP9.34□□□□□ -0.91
SHKBP1-208ENST00000595726 Q8TAT8 98 aa9.34□□□□□ -0.91
SHKBP1-208ENST00000595726 FAM30AQ9NZY2 134 aa9.34□□□□□ -0.91
SHKBP1-208ENST00000595726 ZNF492Q9P255 531 aa9.34□□□□□ -0.91
SHKBP1-208ENST00000595726 RBAKDNA6NC62 111 aa9.33□□□□□ -0.92
SHKBP1-208ENST00000595726 HMGB3O15347 200 aaKnown RBP9.33□□□□□ -0.92
SHKBP1-208ENST00000595726 ZNF324O75467 553 aaPredicted RBP9.33□□□□□ -0.92
SHKBP1-208ENST00000595726 NMBP08949 121 aa9.33□□□□□ -0.92
SHKBP1-208ENST00000595726 CSN1S1P47710 185 aa9.33□□□□□ -0.92
SHKBP1-208ENST00000595726 CDC34P49427 236 aaPredicted RBP9.33□□□□□ -0.92
SHKBP1-208ENST00000595726 ZNF138P52744 262 aa9.33□□□□□ -0.92
SHKBP1-208ENST00000595726 SH3BGRL3Q9H299 93 aa9.33□□□□□ -0.92
SHKBP1-208ENST00000595726 A0A096LPF7 62 aa9.32□□□□□ -0.92
SHKBP1-208ENST00000595726 GAGE12BA1L429 117 aa9.32□□□□□ -0.92
SHKBP1-208ENST00000595726 DIRC3C9JPN6 131 aa9.32□□□□□ -0.92
SHKBP1-208ENST00000595726 GAGE7O76087 117 aa9.32□□□□□ -0.92
SHKBP1-208ENST00000595726 GPX1P07203 203 aa9.32□□□□□ -0.92
SHKBP1-208ENST00000595726 GAGE12FP0CL80 117 aa9.32□□□□□ -0.92
SHKBP1-208ENST00000595726 GAGE12GP0CL81 117 aa9.32□□□□□ -0.92
SHKBP1-208ENST00000595726 GAGE12IP0CL82 117 aa9.32□□□□□ -0.92
SHKBP1-208ENST00000595726 ARL14EPLP0DKL9 152 aa9.32□□□□□ -0.92
SHKBP1-208ENST00000595726 RNASE4P34096 147 aaKnown RBP9.32□□□□□ -0.92
SHKBP1-208ENST00000595726 SERF2P84101 59 aa9.32□□□□□ -0.92
SHKBP1-208ENST00000595726 RPL7L1Q6DKI1 246 aaKnown RBP9.32□□□□□ -0.92
SHKBP1-208ENST00000595726 LINC00612Q8N6U2 182 aa9.32□□□□□ -0.92
SHKBP1-208ENST00000595726 LINC00467Q9BRT7 94 aa9.32□□□□□ -0.92
SHKBP1-208ENST00000595726 TMEM70Q9BUB7 260 aa9.32□□□□□ -0.92
SHKBP1-208ENST00000595726 OTORQ9NRC9 128 aa9.32□□□□□ -0.92
SHKBP1-208ENST00000595726 TRBV7-9A0A0J9YWB2 115 aa9.31□□□□□ -0.92
SHKBP1-208ENST00000595726 SNURFLB1AK76 121 aa9.31□□□□□ -0.92
SHKBP1-208ENST00000595726 STAG3L2P0CL84 134 aa9.31□□□□□ -0.92
SHKBP1-208ENST00000595726 STAG3L3P0CL85 134 aa9.31□□□□□ -0.92
SHKBP1-208ENST00000595726 Q6ZQT7 251 aa9.31□□□□□ -0.92
SHKBP1-208ENST00000595726 C11orf72Q8NBR9 251 aa9.31□□□□□ -0.92
SHKBP1-208ENST00000595726 DEFB104AQ8WTQ1 72 aa9.31□□□□□ -0.92
SHKBP1-208ENST00000595726 VSIG2Q96IQ7 327 aa9.31□□□□□ -0.92
SHKBP1-208ENST00000595726 HYLS1Q96M11 299 aa9.31□□□□□ -0.92
SHKBP1-208ENST00000595726 LRP2P98164 4655 aa9.31□□□□□ -0.92
SHKBP1-208ENST00000595726 PGPA6NDG6 321 aa9.3□□□□□ -0.92
SHKBP1-208ENST00000595726 H3BNG1 76 aa9.3□□□□□ -0.92
SHKBP1-208ENST00000595726 NXPH4O95158 308 aa9.3□□□□□ -0.92
SHKBP1-208ENST00000595726 MBP02144 154 aa9.3□□□□□ -0.92
SHKBP1-208ENST00000595726 PLA2G1BP04054 148 aaKnown RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 126.8 ms