RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 RNF212Q495C1 297 aa16.77■□□□□ 0.28
SHMT1-206ENST00000579558 Q6ZTI0 123 aa16.77■□□□□ 0.28
SHMT1-206ENST00000579558 TMED6Q8WW62 240 aa16.77■□□□□ 0.28
SHMT1-206ENST00000579558 ARPC5O15511 151 aa16.76■□□□□ 0.27
SHMT1-206ENST00000579558 NUDT3O95989 172 aa16.76■□□□□ 0.27
SHMT1-206ENST00000579558 ARL6IP6Q8N6S5 226 aa16.76■□□□□ 0.27
SHMT1-206ENST00000579558 ARPC5LQ9BPX5 153 aa16.76■□□□□ 0.27
SHMT1-206ENST00000579558 TP53TG3Q9ULZ0 132 aa16.76■□□□□ 0.27
SHMT1-206ENST00000579558 TCL1AP56279 114 aa16.75■□□□□ 0.27
SHMT1-206ENST00000579558 GNG5P63218 68 aa16.75■□□□□ 0.27
SHMT1-206ENST00000579558 OR5I1Q13606 314 aa16.75■□□□□ 0.27
SHMT1-206ENST00000579558 IBA57Q5T440 356 aaKnown RBP16.75■□□□□ 0.27
SHMT1-206ENST00000579558 ST6GAL2Q96JF0 529 aa16.75■□□□□ 0.27
SHMT1-206ENST00000579558 KLF12Q9Y4X4 402 aa16.75■□□□□ 0.27
SHMT1-206ENST00000579558 TRGV1A0A0A0MS02 117 aa16.74■□□□□ 0.27
SHMT1-206ENST00000579558 SMLR1H3BR10 107 aa16.74■□□□□ 0.27
SHMT1-206ENST00000579558 CXorf1O96002 111 aa16.74■□□□□ 0.27
SHMT1-206ENST00000579558 SUN5Q8TC36 379 aa16.74■□□□□ 0.27
SHMT1-206ENST00000579558 ATG101Q9BSB4 218 aa16.74■□□□□ 0.27
SHMT1-206ENST00000579558 TMPRSS5Q9H3S3 457 aa16.74■□□□□ 0.27
SHMT1-206ENST00000579558 TMEM167BQ9NRX6 74 aa16.74■□□□□ 0.27
SHMT1-206ENST00000579558 DNAH10Q8IVF4 4471 aa16.74■□□□□ 0.27
SHMT1-206ENST00000579558 TRGV2A0A075B6R0 118 aa16.73■□□□□ 0.27
SHMT1-206ENST00000579558 M0R2N4 97 aa16.73■□□□□ 0.27
SHMT1-206ENST00000579558 TAAR5O14804 337 aa16.73■□□□□ 0.27
SHMT1-206ENST00000579558 MUC21Q5SSG8 566 aa16.73■□□□□ 0.27
SHMT1-206ENST00000579558 Q6AWC8 147 aa16.73■□□□□ 0.27
SHMT1-206ENST00000579558 SSX7Q7RTT5 188 aa16.73■□□□□ 0.27
SHMT1-206ENST00000579558 TRAV8-1A0A0A6YYK1 113 aa16.72■□□□□ 0.27
SHMT1-206ENST00000579558 HOXA5P20719 270 aa16.72■□□□□ 0.27
SHMT1-206ENST00000579558 IQCF2Q8IXL9 164 aa16.72■□□□□ 0.27
SHMT1-206ENST00000579558 IGLV2-18A0A075B6J9 118 aa16.71■□□□□ 0.27
SHMT1-206ENST00000579558 TRAV26-1A0A087WT03 109 aa16.71■□□□□ 0.27
SHMT1-206ENST00000579558 SPINK4O60575 86 aa16.71■□□□□ 0.27
SHMT1-206ENST00000579558 ZNF415Q09FC8 603 aa16.71■□□□□ 0.27
SHMT1-206ENST00000579558 C5orf17Q8NAS9 161 aa16.71■□□□□ 0.27
SHMT1-206ENST00000579558 NACAE9PAV3 2078 aa16.71■□□□□ 0.27
SHMT1-206ENST00000579558 A0A0J9YY99 117 aa16.7■□□□□ 0.26
SHMT1-206ENST00000579558 SERTM2A0A1B0GWG4 89 aa16.7■□□□□ 0.26
SHMT1-206ENST00000579558 ZNF726P1Q15940 193 aa16.7■□□□□ 0.26
SHMT1-206ENST00000579558 AKR1C8PQ5T2L2 129 aa16.7■□□□□ 0.26
SHMT1-206ENST00000579558 C18orf15Q96N68 181 aa16.7■□□□□ 0.26
SHMT1-206ENST00000579558 CYTL1Q9NRR1 136 aa16.7■□□□□ 0.26
SHMT1-206ENST00000579558 CTXND1A0A1B0GTU2 59 aa16.69■□□□□ 0.26
SHMT1-206ENST00000579558 FAM3BP58499 235 aaPredicted RBP16.69■□□□□ 0.26
SHMT1-206ENST00000579558 LGALS9BQ3B8N2 356 aa16.69■□□□□ 0.26
SHMT1-206ENST00000579558 FAM159AQ6UWV7 190 aa16.69■□□□□ 0.26
SHMT1-206ENST00000579558 TVP23CQ96ET8 276 aa16.69■□□□□ 0.26
SHMT1-206ENST00000579558 SGK494Q96LW2 274 aa16.69■□□□□ 0.26
SHMT1-206ENST00000579558 TREM1Q9NP99 234 aa16.69■□□□□ 0.26
SHMT1-206ENST00000579558 MRPL16Q9NX20 251 aaKnown RBP16.69■□□□□ 0.26
SHMT1-206ENST00000579558 NAGKQ9UJ70 344 aa16.69■□□□□ 0.26
SHMT1-206ENST00000579558 GGTLC3B5MD39 225 aa16.68■□□□□ 0.26
SHMT1-206ENST00000579558 F6UZH7 168 aa16.68■□□□□ 0.26
SHMT1-206ENST00000579558 K7EQM0 130 aa16.68■□□□□ 0.26
SHMT1-206ENST00000579558 TCRAP04437 139 aa16.68■□□□□ 0.26
SHMT1-206ENST00000579558 SUMO1P63165 101 aaKnown RBP16.68■□□□□ 0.26
SHMT1-206ENST00000579558 NDFIP1Q9BT67 221 aa16.68■□□□□ 0.26
SHMT1-206ENST00000579558 CCL18P55774 89 aa16.67■□□□□ 0.26
SHMT1-206ENST00000579558 TMEM183BQ1AE95 376 aa16.67■□□□□ 0.26
SHMT1-206ENST00000579558 TMEM183AQ8IXX5 376 aa16.67■□□□□ 0.26
SHMT1-206ENST00000579558 TRGV11A0A075B6L2 103 aa16.66■□□□□ 0.26
SHMT1-206ENST00000579558 TRAV21A0A0B4J279 112 aa16.66■□□□□ 0.26
SHMT1-206ENST00000579558 KCNRGQ8N5I3 272 aa16.66■□□□□ 0.26
SHMT1-206ENST00000579558 MDFICQ9P1T7 246 aa16.66■□□□□ 0.26
SHMT1-206ENST00000579558 EPDR1Q9UM22 224 aa16.66■□□□□ 0.26
SHMT1-206ENST00000579558 ZNF345Q14585 488 aa16.65■□□□□ 0.26
SHMT1-206ENST00000579558 A0A1W2PRE2 83 aa16.64■□□□□ 0.25
SHMT1-206ENST00000579558 H3BNG1 76 aa16.64■□□□□ 0.25
SHMT1-206ENST00000579558 FGF8P55075 233 aaPredicted RBP16.64■□□□□ 0.25
SHMT1-206ENST00000579558 TDRG1Q3Y452 100 aa16.64■□□□□ 0.25
SHMT1-206ENST00000579558 Q6ZR54 194 aa16.64■□□□□ 0.25
SHMT1-206ENST00000579558 CYB561D1Q8N8Q1 229 aa16.64■□□□□ 0.25
SHMT1-206ENST00000579558 OR11H4Q8NGC9 324 aa16.64■□□□□ 0.25
SHMT1-206ENST00000579558 PSG8Q9UQ74 426 aa16.64■□□□□ 0.25
SHMT1-206ENST00000579558 IGHV3-53P01767 116 aa16.63■□□□□ 0.25
SHMT1-206ENST00000579558 UBE2G2P60604 165 aa16.63■□□□□ 0.25
SHMT1-206ENST00000579558 LINC00336Q6ZUF6 198 aa16.63■□□□□ 0.25
SHMT1-206ENST00000579558 LINC00588Q9Y4M8 146 aa16.63■□□□□ 0.25
SHMT1-206ENST00000579558 MUC4Q99102 2169 aa16.62■□□□□ 0.25
SHMT1-206ENST00000579558 HMSDA8MTL9 139 aa16.62■□□□□ 0.25
SHMT1-206ENST00000579558 FLI1Q01543 452 aaPredicted RBP16.62■□□□□ 0.25
SHMT1-206ENST00000579558 C8orf49Q96NF6 230 aa16.62■□□□□ 0.25
SHMT1-206ENST00000579558 SPXQ9BT56 116 aa16.62■□□□□ 0.25
SHMT1-206ENST00000579558 MAP1LC3B2A6NCE7 125 aa16.61■□□□□ 0.25
SHMT1-206ENST00000579558 GNRH2O43555 120 aa16.61■□□□□ 0.25
SHMT1-206ENST00000579558 IGLV2-11P01706 119 aa16.61■□□□□ 0.25
SHMT1-206ENST00000579558 PRNTQ86SH4 94 aa16.61■□□□□ 0.25
SHMT1-206ENST00000579558 TMEM75Q8N9X5 138 aa16.61■□□□□ 0.25
SHMT1-206ENST00000579558 ZNRF2Q8NHG8 242 aa16.61■□□□□ 0.25
SHMT1-206ENST00000579558 VSIG2Q96IQ7 327 aa16.61■□□□□ 0.25
SHMT1-206ENST00000579558 MAP1LC3BQ9GZQ8 125 aa16.61■□□□□ 0.25
SHMT1-206ENST00000579558 A0A0D9SG52 128 aa16.6■□□□□ 0.25
SHMT1-206ENST00000579558 IFNA7P01567 189 aa16.6■□□□□ 0.25
SHMT1-206ENST00000579558 SDF2L1Q9HCN8 221 aa16.6■□□□□ 0.25
SHMT1-206ENST00000579558 IGHV3-16A0A0C4DH30 117 aa16.59■□□□□ 0.25
SHMT1-206ENST00000579558 FBLL1A6NHQ2 334 aaKnown RBP16.59■□□□□ 0.25
SHMT1-206ENST00000579558 RTL8CO15255 209 aa16.59■□□□□ 0.25
SHMT1-206ENST00000579558 TYMSP04818 313 aa16.59■□□□□ 0.25
SHMT1-206ENST00000579558 ZFP69Q49AA0 526 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms