RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 SAP30O75446 220 aa7.63□□□□□ -1.19
SS18-207ENST00000577636 IGKV2D-40P01614 121 aaPredicted RBP7.63□□□□□ -1.19
SS18-207ENST00000577636 IGLV2-11P01706 119 aa7.63□□□□□ -1.19
SS18-207ENST00000577636 S100A6P06703 90 aa7.63□□□□□ -1.19
SS18-207ENST00000577636 CXCL1P09341 107 aa7.63□□□□□ -1.19
SS18-207ENST00000577636 SNRPD3P62318 126 aaKnown RBP7.63□□□□□ -1.19
SS18-207ENST00000577636 KLF5Q13887 457 aaPredicted RBP7.63□□□□□ -1.19
SS18-207ENST00000577636 COX19Q49B96 90 aa7.63□□□□□ -1.19
SS18-207ENST00000577636 CT83Q5H943 113 aa7.63□□□□□ -1.19
SS18-207ENST00000577636 IGFL4Q6B9Z1 124 aa7.63□□□□□ -1.19
SS18-207ENST00000577636 RNF182Q8N6D2 247 aa7.63□□□□□ -1.19
SS18-207ENST00000577636 PYGO2Q9BRQ0 406 aa7.63□□□□□ -1.19
SS18-207ENST00000577636 KRTAP17-1Q9BYP8 105 aa7.63□□□□□ -1.19
SS18-207ENST00000577636 RPP21Q9H633 154 aaKnown RBP7.63□□□□□ -1.19
SS18-207ENST00000577636 SRD5A3Q9H8P0 318 aa7.63□□□□□ -1.19
SS18-207ENST00000577636 V9GYV3 84 aa7.63□□□□□ -1.19
SS18-207ENST00000577636 IGKV3-7A0A075B6H7 116 aa7.62□□□□□ -1.19
SS18-207ENST00000577636 TMEM213A2RRL7 107 aa7.62□□□□□ -1.19
SS18-207ENST00000577636 ZNF705FA8MVS1 300 aaPredicted RBP7.62□□□□□ -1.19
SS18-207ENST00000577636 CBLN1P23435 193 aa7.62□□□□□ -1.19
SS18-207ENST00000577636 INSL3P51460 131 aa7.62□□□□□ -1.19
SS18-207ENST00000577636 ZNF138P52744 262 aa7.62□□□□□ -1.19
SS18-207ENST00000577636 SMUG1Q53HV7 270 aa7.62□□□□□ -1.19
SS18-207ENST00000577636 LYSTQ99698 3801 aa7.62□□□□□ -1.19
SS18-207ENST00000577636 NAT8BQ9UHF3 227 aa7.62□□□□□ -1.19
SS18-207ENST00000577636 TRAV8-2A0A0B4J237 113 aa7.61□□□□□ -1.19
SS18-207ENST00000577636 C2orf70A6NJV1 201 aa7.61□□□□□ -1.19
SS18-207ENST00000577636 TYMSP04818 313 aa7.61□□□□□ -1.19
SS18-207ENST00000577636 HLA-DMBP28068 263 aa7.61□□□□□ -1.19
SS18-207ENST00000577636 SLURP1P55000 103 aa7.61□□□□□ -1.19
SS18-207ENST00000577636 FAM162BQ5T6X4 162 aa7.61□□□□□ -1.19
SS18-207ENST00000577636 WDR73Q6P4I2 378 aa7.61□□□□□ -1.19
SS18-207ENST00000577636 RBPMS2Q6ZRY4 209 aaKnown RBP7.61□□□□□ -1.19
SS18-207ENST00000577636 OR9G4Q8NGQ1 327 aa7.61□□□□□ -1.19
SS18-207ENST00000577636 DYNLRB2Q8TF09 96 aa7.61□□□□□ -1.19
SS18-207ENST00000577636 TSKUQ8WUA8 353 aa7.61□□□□□ -1.19
SS18-207ENST00000577636 BORCS7Q96B45 105 aa7.61□□□□□ -1.19
SS18-207ENST00000577636 ZC2HC1AQ96GY0 325 aa7.61□□□□□ -1.19
SS18-207ENST00000577636 LINC00477Q96M19 166 aa7.61□□□□□ -1.19
SS18-207ENST00000577636 GFRA4Q9GZZ7 299 aa7.61□□□□□ -1.19
SS18-207ENST00000577636 SAV1Q9H4B6 383 aaPredicted RBP7.61□□□□□ -1.19
SS18-207ENST00000577636 SMIM27A0A1W2PRY6 76 aa7.6□□□□□ -1.19
SS18-207ENST00000577636 C19orf71A6NCJ1 209 aa7.6□□□□□ -1.19
SS18-207ENST00000577636 FAM231BA6NCW3 169 aa7.6□□□□□ -1.19
SS18-207ENST00000577636 TCL1AP56279 114 aa7.6□□□□□ -1.19
SS18-207ENST00000577636 RPS20P60866 119 aaKnown RBP7.6□□□□□ -1.19
SS18-207ENST00000577636 FHL3Q13643 280 aa7.6□□□□□ -1.19
SS18-207ENST00000577636 C9orf47Q6ZRZ4 202 aa7.6□□□□□ -1.19
SS18-207ENST00000577636 COX8CQ7Z4L0 72 aa7.6□□□□□ -1.19
SS18-207ENST00000577636 OR2D3Q8NGH3 330 aa7.6□□□□□ -1.19
SS18-207ENST00000577636 VGLL1Q99990 258 aa7.6□□□□□ -1.19
SS18-207ENST00000577636 MS4A6AQ9H2W1 248 aa7.6□□□□□ -1.19
SS18-207ENST00000577636 PPP1R14DQ9NXH3 145 aa7.6□□□□□ -1.19
SS18-207ENST00000577636 LENEPQ9Y5L5 61 aa7.6□□□□□ -1.19
SS18-207ENST00000577636 TMEM189A5PLL7 270 aa7.59□□□□□ -1.19
SS18-207ENST00000577636 IZUMO1RA6ND01 250 aa7.59□□□□□ -1.19
SS18-207ENST00000577636 FABP5P3A8MUU1 101 aa7.59□□□□□ -1.19
SS18-207ENST00000577636 SOCS3O14543 225 aa7.59□□□□□ -1.19
SS18-207ENST00000577636 MT-ND6P03923 174 aa7.59□□□□□ -1.19
SS18-207ENST00000577636 TRGC2P03986 189 aa7.59□□□□□ -1.19
SS18-207ENST00000577636 TFPI2P48307 235 aa7.59□□□□□ -1.19
SS18-207ENST00000577636 HIST1H1AQ02539 215 aaPredicted RBP7.59□□□□□ -1.19
SS18-207ENST00000577636 ERCC8Q13216 396 aa7.59□□□□□ -1.19
SS18-207ENST00000577636 Q6AWC8 147 aa7.59□□□□□ -1.19
SS18-207ENST00000577636 EBLN2Q6P2I7 272 aa7.59□□□□□ -1.19
SS18-207ENST00000577636 RASL11AQ6T310 242 aa7.59□□□□□ -1.19
SS18-207ENST00000577636 WFDC3Q8IUB2 231 aa7.59□□□□□ -1.19
SS18-207ENST00000577636 ZFP82Q8N141 532 aa7.59□□□□□ -1.19
SS18-207ENST00000577636 Q8TAT8 98 aa7.59□□□□□ -1.19
SS18-207ENST00000577636 FRZBQ92765 325 aa7.59□□□□□ -1.19
SS18-207ENST00000577636 DLX4Q92988 240 aaPredicted RBP7.59□□□□□ -1.19
SS18-207ENST00000577636 TRAPPC1Q9Y5R8 145 aa7.59□□□□□ -1.19
SS18-207ENST00000577636 TRAV2A0A0B4J234 112 aa7.58□□□□□ -1.2
SS18-207ENST00000577636 PRAC2D3DTV9 90 aa7.58□□□□□ -1.2
SS18-207ENST00000577636 NPIPB6E9PJ23 425 aa7.58□□□□□ -1.2
SS18-207ENST00000577636 SH2D1AO60880 128 aa7.58□□□□□ -1.2
SS18-207ENST00000577636 S100A8P05109 93 aa7.58□□□□□ -1.2
SS18-207ENST00000577636 IGHV4-30-4P0DP06 118 aa7.58□□□□□ -1.2
SS18-207ENST00000577636 RAB4BP61018 213 aa7.58□□□□□ -1.2
SS18-207ENST00000577636 ATP5L2Q7Z4Y8 100 aa7.58□□□□□ -1.2
SS18-207ENST00000577636 C8orf49Q96NF6 230 aa7.58□□□□□ -1.2
SS18-207ENST00000577636 TM2D3Q9BRN9 247 aa7.58□□□□□ -1.2
SS18-207ENST00000577636 AGPAT4-IT1Q9H0P7 198 aa7.58□□□□□ -1.2
SS18-207ENST00000577636 EDA2RQ9HAV5 297 aa7.58□□□□□ -1.2
SS18-207ENST00000577636 SORL1Q92673 2214 aa7.58□□□□□ -1.2
SS18-207ENST00000577636 DNAH1Q9P2D7 4330 aa7.57□□□□□ -1.2
SS18-207ENST00000577636 TRBV7-9A0A0J9YWB2 115 aa7.57□□□□□ -1.2
SS18-207ENST00000577636 OR4C46A6NHA9 309 aa7.57□□□□□ -1.2
SS18-207ENST00000577636 HIGD1CA8MV81 97 aa7.57□□□□□ -1.2
SS18-207ENST00000577636 DUSP14O95147 198 aaKnown RBP7.57□□□□□ -1.2
SS18-207ENST00000577636 CA1P00915 261 aaPredicted RBP7.57□□□□□ -1.2
SS18-207ENST00000577636 PSMG4Q5JS54 123 aa7.57□□□□□ -1.2
SS18-207ENST00000577636 OR8A1Q8NGG7 326 aa7.57□□□□□ -1.2
SS18-207ENST00000577636 DCANP1Q8TF63 244 aa7.57□□□□□ -1.2
SS18-207ENST00000577636 NEU1Q99519 415 aa7.57□□□□□ -1.2
SS18-207ENST00000577636 GNB1LQ9BYB4 327 aa7.57□□□□□ -1.2
SS18-207ENST00000577636 STARD9Q9P2P6 4700 aa7.57□□□□□ -1.2
SS18-207ENST00000577636 STAB2Q8WWQ8 2551 aa7.56□□□□□ -1.2
SS18-207ENST00000577636 TRAV25A0A0B4J276 109 aa7.56□□□□□ -1.2
SS18-207ENST00000577636 A0A1B0GW15 77 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms