RNA–Protein interactions for RNA: ENST00000572043.5

CTDNEP1-207, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3 BASIC

Gene CTDNEP1, Length 857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-207ENST00000572043 RNF222A6NCQ9 220 aa12.42□□□□□ -0.42
CTDNEP1-207ENST00000572043 LGALS9BQ3B8N2 356 aa12.42□□□□□ -0.42
CTDNEP1-207ENST00000572043 ASB13Q8WXK3 278 aa12.42□□□□□ -0.42
CTDNEP1-207ENST00000572043 RAB24Q969Q5 203 aa12.42□□□□□ -0.42
CTDNEP1-207ENST00000572043 PSMG3Q9BT73 122 aaPredicted RBP12.42□□□□□ -0.42
CTDNEP1-207ENST00000572043 MRPL16Q9NX20 251 aaKnown RBP12.42□□□□□ -0.42
CTDNEP1-207ENST00000572043 TRAV8-1A0A0A6YYK1 113 aa12.41□□□□□ -0.42
CTDNEP1-207ENST00000572043 TRBV7-9A0A0J9YWB2 115 aa12.41□□□□□ -0.42
CTDNEP1-207ENST00000572043 TCL1AP56279 114 aa12.41□□□□□ -0.42
CTDNEP1-207ENST00000572043 SGK494Q96LW2 274 aa12.41□□□□□ -0.42
CTDNEP1-207ENST00000572043 NAGKQ9UJ70 344 aa12.41□□□□□ -0.42
CTDNEP1-207ENST00000572043 TNFSF18Q9UNG2 199 aa12.41□□□□□ -0.42
CTDNEP1-207ENST00000572043 F6UZH7 168 aa12.4□□□□□ -0.42
CTDNEP1-207ENST00000572043 RTL8CO15255 209 aa12.4□□□□□ -0.42
CTDNEP1-207ENST00000572043 SPINK4O60575 86 aa12.4□□□□□ -0.42
CTDNEP1-207ENST00000572043 IGHV3-53P01767 116 aa12.4□□□□□ -0.42
CTDNEP1-207ENST00000572043 STAG3L2P0CL84 134 aa12.4□□□□□ -0.42
CTDNEP1-207ENST00000572043 STAG3L3P0CL85 134 aa12.4□□□□□ -0.42
CTDNEP1-207ENST00000572043 GCHFRP30047 84 aa12.4□□□□□ -0.42
CTDNEP1-207ENST00000572043 CCL18P55774 89 aa12.4□□□□□ -0.42
CTDNEP1-207ENST00000572043 IQCF2Q8IXL9 164 aa12.4□□□□□ -0.42
CTDNEP1-207ENST00000572043 LINC00588Q9Y4M8 146 aa12.4□□□□□ -0.42
CTDNEP1-207ENST00000572043 BORCS7-ASMTA0A0B4J1R7 106 aa12.39□□□□□ -0.43
CTDNEP1-207ENST00000572043 SMLR1H3BR10 107 aa12.39□□□□□ -0.43
CTDNEP1-207ENST00000572043 MBP02144 154 aa12.39□□□□□ -0.43
CTDNEP1-207ENST00000572043 SERF2P84101 59 aa12.39□□□□□ -0.43
CTDNEP1-207ENST00000572043 ZNF415Q09FC8 603 aa12.39□□□□□ -0.43
CTDNEP1-207ENST00000572043 IBA57Q5T440 356 aaKnown RBP12.39□□□□□ -0.43
CTDNEP1-207ENST00000572043 Q6ZR54 194 aa12.39□□□□□ -0.43
CTDNEP1-207ENST00000572043 LINC00336Q6ZUF6 198 aa12.39□□□□□ -0.43
CTDNEP1-207ENST00000572043 SSX7Q7RTT5 188 aa12.39□□□□□ -0.43
CTDNEP1-207ENST00000572043 ACTR3CQ9C0K3 210 aaPredicted RBP12.39□□□□□ -0.43
CTDNEP1-207ENST00000572043 MDFICQ9P1T7 246 aa12.39□□□□□ -0.43
CTDNEP1-207ENST00000572043 PRSS29PA6NIE9 313 aa12.38□□□□□ -0.43
CTDNEP1-207ENST00000572043 G3V3Q6 166 aa12.38□□□□□ -0.43
CTDNEP1-207ENST00000572043 ARPC5O15511 151 aa12.38□□□□□ -0.43
CTDNEP1-207ENST00000572043 TMEM183BQ1AE95 376 aa12.38□□□□□ -0.43
CTDNEP1-207ENST00000572043 FAM159AQ6UWV7 190 aa12.38□□□□□ -0.43
CTDNEP1-207ENST00000572043 TMEM183AQ8IXX5 376 aa12.38□□□□□ -0.43
CTDNEP1-207ENST00000572043 ZNRF2Q8NHG8 242 aa12.38□□□□□ -0.43
CTDNEP1-207ENST00000572043 LENEPQ9Y5L5 61 aa12.38□□□□□ -0.43
CTDNEP1-207ENST00000572043 DNAH10Q8IVF4 4471 aa12.37□□□□□ -0.43
CTDNEP1-207ENST00000572043 FAM3BP58499 235 aaPredicted RBP12.37□□□□□ -0.43
CTDNEP1-207ENST00000572043 Q6AWC8 147 aa12.37□□□□□ -0.43
CTDNEP1-207ENST00000572043 TMED6Q8WW62 240 aa12.37□□□□□ -0.43
CTDNEP1-207ENST00000572043 TVP23CQ96ET8 276 aa12.37□□□□□ -0.43
CTDNEP1-207ENST00000572043 ST6GAL2Q96JF0 529 aa12.37□□□□□ -0.43
CTDNEP1-207ENST00000572043 TREM1Q9NP99 234 aa12.37□□□□□ -0.43
CTDNEP1-207ENST00000572043 DNAH6Q9C0G6 4158 aa12.37□□□□□ -0.43
CTDNEP1-207ENST00000572043 CXorf1O96002 111 aa12.36□□□□□ -0.43
CTDNEP1-207ENST00000572043 FRAS1Q86XX4 4008 aa12.35□□□□□ -0.43
CTDNEP1-207ENST00000572043 SUMO1P63165 101 aaKnown RBP12.35□□□□□ -0.43
CTDNEP1-207ENST00000572043 C5orf17Q8NAS9 161 aa12.35□□□□□ -0.43
CTDNEP1-207ENST00000572043 VSIG2Q96IQ7 327 aa12.35□□□□□ -0.43
CTDNEP1-207ENST00000572043 C18orf15Q96N68 181 aa12.35□□□□□ -0.43
CTDNEP1-207ENST00000572043 TRGV11A0A075B6L2 103 aa12.34□□□□□ -0.43
CTDNEP1-207ENST00000572043 GGTLC3B5MD39 225 aa12.34□□□□□ -0.43
CTDNEP1-207ENST00000572043 GNRH2O43555 120 aa12.34□□□□□ -0.43
CTDNEP1-207ENST00000572043 TCRAP04437 139 aa12.34□□□□□ -0.43
CTDNEP1-207ENST00000572043 ZNF726P1Q15940 193 aa12.34□□□□□ -0.43
CTDNEP1-207ENST00000572043 ESRGQ1W209 222 aa12.34□□□□□ -0.43
CTDNEP1-207ENST00000572043 C1orf134Q5TEV5 83 aa12.34□□□□□ -0.43
CTDNEP1-207ENST00000572043 SUN5Q8TC36 379 aa12.34□□□□□ -0.43
CTDNEP1-207ENST00000572043 TMEM167BQ9NRX6 74 aa12.34□□□□□ -0.43
CTDNEP1-207ENST00000572043 TRAV21A0A0B4J279 112 aa12.33□□□□□ -0.44
CTDNEP1-207ENST00000572043 NBDYA0A0U1RRE5 68 aa12.33□□□□□ -0.44
CTDNEP1-207ENST00000572043 FGF8P55075 233 aaPredicted RBP12.33□□□□□ -0.44
CTDNEP1-207ENST00000572043 SOHLH1Q5JUK2 328 aa12.33□□□□□ -0.44
CTDNEP1-207ENST00000572043 AKR1C8PQ5T2L2 129 aa12.33□□□□□ -0.44
CTDNEP1-207ENST00000572043 ARL6IP6Q8N6S5 226 aa12.33□□□□□ -0.44
CTDNEP1-207ENST00000572043 C8orf49Q96NF6 230 aa12.33□□□□□ -0.44
CTDNEP1-207ENST00000572043 NDFIP1Q9BT67 221 aa12.33□□□□□ -0.44
CTDNEP1-207ENST00000572043 A0A096LPF7 62 aa12.32□□□□□ -0.44
CTDNEP1-207ENST00000572043 H3BNG1 76 aa12.32□□□□□ -0.44
CTDNEP1-207ENST00000572043 PAX4O43316 350 aa12.32□□□□□ -0.44
CTDNEP1-207ENST00000572043 SFTA3P0C7M3 94 aa12.32□□□□□ -0.44
CTDNEP1-207ENST00000572043 UBE2G2P60604 165 aa12.32□□□□□ -0.44
CTDNEP1-207ENST00000572043 PRNTQ86SH4 94 aa12.32□□□□□ -0.44
CTDNEP1-207ENST00000572043 CYTL1Q9NRR1 136 aa12.32□□□□□ -0.44
CTDNEP1-207ENST00000572043 EPDR1Q9UM22 224 aa12.32□□□□□ -0.44
CTDNEP1-207ENST00000572043 PSG8Q9UQ74 426 aa12.32□□□□□ -0.44
CTDNEP1-207ENST00000572043 CTXND1A0A1B0GTU2 59 aa12.31□□□□□ -0.44
CTDNEP1-207ENST00000572043 A0A1B0GVY2 172 aa12.31□□□□□ -0.44
CTDNEP1-207ENST00000572043 SERTM2A0A1B0GWG4 89 aa12.31□□□□□ -0.44
CTDNEP1-207ENST00000572043 K7EQM0 130 aa12.31□□□□□ -0.44
CTDNEP1-207ENST00000572043 Q9H8V8 135 aa12.31□□□□□ -0.44
CTDNEP1-207ENST00000572043 TRGV4A0A0C4DH28 118 aa12.3□□□□□ -0.44
CTDNEP1-207ENST00000572043 TAAR5O14804 337 aa12.3□□□□□ -0.44
CTDNEP1-207ENST00000572043 TYMSP04818 313 aa12.3□□□□□ -0.44
CTDNEP1-207ENST00000572043 ZNF80P51504 273 aaPredicted RBP12.3□□□□□ -0.44
CTDNEP1-207ENST00000572043 FHL2Q14192 279 aa12.3□□□□□ -0.44
CTDNEP1-207ENST00000572043 ZNF479Q96JC4 524 aa12.3□□□□□ -0.44
CTDNEP1-207ENST00000572043 LINC00479Q96M42 142 aa12.3□□□□□ -0.44
CTDNEP1-207ENST00000572043 SDF2L1Q9HCN8 221 aa12.3□□□□□ -0.44
CTDNEP1-207ENST00000572043 TRAV34A0A0B4J273 112 aa12.29□□□□□ -0.44
CTDNEP1-207ENST00000572043 IGHV3-16A0A0C4DH30 117 aa12.29□□□□□ -0.44
CTDNEP1-207ENST00000572043 IFNA7P01567 189 aa12.29□□□□□ -0.44
CTDNEP1-207ENST00000572043 IGLV2-11P01706 119 aa12.29□□□□□ -0.44
CTDNEP1-207ENST00000572043 FLI1Q01543 452 aaPredicted RBP12.29□□□□□ -0.44
CTDNEP1-207ENST00000572043 TDRG1Q3Y452 100 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms