RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 EIF3GO75821 320 aaKnown RBP eCLIP10.23□□□□□ -0.77
CLN3-236ENST00000568558 GPX1P07203 203 aa10.23□□□□□ -0.77
CLN3-236ENST00000568558 FFAR4Q5NUL3 377 aa10.23□□□□□ -0.77
CLN3-236ENST00000568558 PRR9Q5T870 116 aa10.23□□□□□ -0.77
CLN3-236ENST00000568558 BLNKQ8WV28 456 aa10.23□□□□□ -0.77
CLN3-236ENST00000568558 ST6GAL2Q96JF0 529 aa10.23□□□□□ -0.77
CLN3-236ENST00000568558 AAMDCQ9H7C9 122 aa10.23□□□□□ -0.77
CLN3-236ENST00000568558 ICOSQ9Y6W8 199 aa10.23□□□□□ -0.77
CLN3-236ENST00000568558 IGKV2-40A0A087WW87 121 aaPredicted RBP10.22□□□□□ -0.77
CLN3-236ENST00000568558 RNF222A6NCQ9 220 aa10.22□□□□□ -0.77
CLN3-236ENST00000568558 C17orf112F2Z3M2 114 aa10.22□□□□□ -0.77
CLN3-236ENST00000568558 PAX4O43316 350 aa10.22□□□□□ -0.77
CLN3-236ENST00000568558 IFNA5P01569 189 aa10.22□□□□□ -0.77
CLN3-236ENST00000568558 IGKV2D-40P01614 121 aaPredicted RBP10.22□□□□□ -0.77
CLN3-236ENST00000568558 NMBP08949 121 aa10.22□□□□□ -0.77
CLN3-236ENST00000568558 ICAM4Q14773 271 aa10.22□□□□□ -0.77
CLN3-236ENST00000568558 TMEM78Q5T7P6 136 aa10.22□□□□□ -0.77
CLN3-236ENST00000568558 ZFAND2AQ8N6M9 145 aa10.22□□□□□ -0.77
CLN3-236ENST00000568558 OR2T35Q8NGX2 323 aa10.22□□□□□ -0.77
CLN3-236ENST00000568558 SCGB1C1Q8TD33 95 aa10.22□□□□□ -0.77
CLN3-236ENST00000568558 KCNIP2Q9NS61 270 aa10.22□□□□□ -0.77
CLN3-236ENST00000568558 TP53TG3Q9ULZ0 132 aa10.22□□□□□ -0.77
CLN3-236ENST00000568558 IGHV1OR15-1A0A075B7D0 117 aa10.21□□□□□ -0.77
CLN3-236ENST00000568558 FXYD6-FXYD2A0A087WZ82 144 aa10.21□□□□□ -0.77
CLN3-236ENST00000568558 SMLR1H3BR10 107 aa10.21□□□□□ -0.77
CLN3-236ENST00000568558 RGS13O14921 159 aa10.21□□□□□ -0.77
CLN3-236ENST00000568558 NXPH4O95158 308 aa10.21□□□□□ -0.77
CLN3-236ENST00000568558 FAM122CQ6P4D5 195 aa10.21□□□□□ -0.77
CLN3-236ENST00000568558 Q6ZQT7 251 aa10.21□□□□□ -0.77
CLN3-236ENST00000568558 ASB13Q8WXK3 278 aa10.21□□□□□ -0.77
CLN3-236ENST00000568558 VGLL1Q99990 258 aa10.21□□□□□ -0.77
CLN3-236ENST00000568558 MRPL16Q9NX20 251 aaKnown RBP10.21□□□□□ -0.77
CLN3-236ENST00000568558 ZNF492Q9P255 531 aa10.21□□□□□ -0.77
CLN3-236ENST00000568558 PRO0255Q9UI72 69 aa10.21□□□□□ -0.77
CLN3-236ENST00000568558 IGHV3-53P01767 116 aa10.2□□□□□ -0.78
CLN3-236ENST00000568558 ARPC5LQ9BPX5 153 aa10.2□□□□□ -0.78
CLN3-236ENST00000568558 MRPL32Q9BYC8 188 aaKnown RBP10.2□□□□□ -0.78
CLN3-236ENST00000568558 TNFSF18Q9UNG2 199 aa10.2□□□□□ -0.78
CLN3-236ENST00000568558 OR10J4P0C629 311 aa10.19□□□□□ -0.78
CLN3-236ENST00000568558 NBEAP1P0C6P0 100 aa10.19□□□□□ -0.78
CLN3-236ENST00000568558 CRYBA4P53673 196 aa10.19□□□□□ -0.78
CLN3-236ENST00000568558 FXYD5Q96DB9 178 aa10.19□□□□□ -0.78
CLN3-236ENST00000568558 OR51M1Q9H341 326 aa10.19□□□□□ -0.78
CLN3-236ENST00000568558 ERVFC1-1P60608 527 aa10.18□□□□□ -0.78
CLN3-236ENST00000568558 RAB2AP61019 212 aa10.18□□□□□ -0.78
CLN3-236ENST00000568558 ZNF415Q09FC8 603 aa10.18□□□□□ -0.78
CLN3-236ENST00000568558 SLAQ13239 276 aa10.18□□□□□ -0.78
CLN3-236ENST00000568558 FHL2Q14192 279 aa10.18□□□□□ -0.78
CLN3-236ENST00000568558 HSD17B11Q8NBQ5 300 aa10.18□□□□□ -0.78
CLN3-236ENST00000568558 PHYHIPLQ96FC7 376 aa10.18□□□□□ -0.78
CLN3-236ENST00000568558 PAXXQ9BUH6 204 aa10.18□□□□□ -0.78
CLN3-236ENST00000568558 HHLA3Q9XRX5 114 aa10.18□□□□□ -0.78
CLN3-236ENST00000568558 TRBV7-9A0A0J9YWB2 115 aa10.17□□□□□ -0.78
CLN3-236ENST00000568558 EREGO14944 169 aa10.17□□□□□ -0.78
CLN3-236ENST00000568558 ZNF138P52744 262 aa10.17□□□□□ -0.78
CLN3-236ENST00000568558 MRPL23Q16540 153 aaKnown RBP10.17□□□□□ -0.78
CLN3-236ENST00000568558 RPL7L1Q6DKI1 246 aaKnown RBP10.17□□□□□ -0.78
CLN3-236ENST00000568558 LYPD5Q6UWN5 251 aa10.17□□□□□ -0.78
CLN3-236ENST00000568558 INO80EQ8NBZ0 244 aaPredicted RBP10.17□□□□□ -0.78
CLN3-236ENST00000568558 Q8TAT8 98 aa10.17□□□□□ -0.78
CLN3-236ENST00000568558 C8orf49Q96NF6 230 aa10.17□□□□□ -0.78
CLN3-236ENST00000568558 SH3BGRL3Q9H299 93 aa10.17□□□□□ -0.78
CLN3-236ENST00000568558 PGPEP1Q9NXJ5 209 aa10.17□□□□□ -0.78
CLN3-236ENST00000568558 TNFRSF18Q9Y5U5 241 aa10.17□□□□□ -0.78
CLN3-236ENST00000568558 HERC1Q15751 4861 aa10.17□□□□□ -0.78
CLN3-236ENST00000568558 OR7C2O60412 319 aa10.16□□□□□ -0.78
CLN3-236ENST00000568558 ATP6V0CP27449 155 aa10.16□□□□□ -0.78
CLN3-236ENST00000568558 FUSP35637 526 aaKnown RBP eCLIP10.16□□□□□ -0.78
CLN3-236ENST00000568558 ZNF266Q14584 549 aa10.16□□□□□ -0.78
CLN3-236ENST00000568558 ACOT6Q3I5F7 207 aaPredicted RBP10.16□□□□□ -0.78
CLN3-236ENST00000568558 CDPF1Q6NVV7 123 aa10.16□□□□□ -0.78
CLN3-236ENST00000568558 NEGR1Q7Z3B1 354 aa10.16□□□□□ -0.78
CLN3-236ENST00000568558 VPS13BQ7Z7G8 4022 aa10.16□□□□□ -0.78
CLN3-236ENST00000568558 EPM2AB3EWF7 344 aa10.15□□□□□ -0.78
CLN3-236ENST00000568558 HMGB3O15347 200 aaKnown RBP10.15□□□□□ -0.78
CLN3-236ENST00000568558 ARPC5O15511 151 aa10.15□□□□□ -0.78
CLN3-236ENST00000568558 MUC21Q5SSG8 566 aa10.15□□□□□ -0.78
CLN3-236ENST00000568558 NFE4Q86UQ8 179 aa10.15□□□□□ -0.78
CLN3-236ENST00000568558 DNAH8Q96JB1 4490 aa10.14□□□□□ -0.79
CLN3-236ENST00000568558 TRGV4A0A0C4DH28 118 aa10.14□□□□□ -0.79
CLN3-236ENST00000568558 RBAKDNA6NC62 111 aa10.14□□□□□ -0.79
CLN3-236ENST00000568558 DNAH10OSP0CZ25 163 aa10.14□□□□□ -0.79
CLN3-236ENST00000568558 UBE2L3P68036 154 aaKnown RBP10.14□□□□□ -0.79
CLN3-236ENST00000568558 KHDC3LQ587J8 217 aa10.14□□□□□ -0.79
CLN3-236ENST00000568558 OR11H4Q8NGC9 324 aa10.14□□□□□ -0.79
CLN3-236ENST00000568558 OR10G4Q8NGN3 311 aa10.14□□□□□ -0.79
CLN3-236ENST00000568558 OR10G9Q8NGN4 311 aa10.14□□□□□ -0.79
CLN3-236ENST00000568558 OR10G7Q8NGN6 311 aa10.14□□□□□ -0.79
CLN3-236ENST00000568558 OR2G3Q8NGZ4 309 aa10.14□□□□□ -0.79
CLN3-236ENST00000568558 PSMG3Q9BT73 122 aaPredicted RBP10.14□□□□□ -0.79
CLN3-236ENST00000568558 MDFICQ9P1T7 246 aa10.14□□□□□ -0.79
CLN3-236ENST00000568558 LY96Q9Y6Y9 160 aa10.14□□□□□ -0.79
CLN3-236ENST00000568558 TRAV9-2A0A087WT02 112 aa10.13□□□□□ -0.79
CLN3-236ENST00000568558 A0A087WTM6 91 aa10.13□□□□□ -0.79
CLN3-236ENST00000568558 K7EQD1 137 aa10.13□□□□□ -0.79
CLN3-236ENST00000568558 SFTA3P0C7M3 94 aa10.13□□□□□ -0.79
CLN3-236ENST00000568558 SRIP30626 198 aa10.13□□□□□ -0.79
CLN3-236ENST00000568558 CSN1S1P47710 185 aa10.13□□□□□ -0.79
CLN3-236ENST00000568558 XGP55808 180 aa10.13□□□□□ -0.79
CLN3-236ENST00000568558 RANP62826 216 aaKnown RBP10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms