RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 UBE2AP49459 152 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 KRTAP10-9P60411 292 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 RPS11P62280 158 aaKnown RBP eCLIP3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 PSG9Q00887 426 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 TAF9Q16594 264 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 SCGB2B2Q4G0G5 96 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 MORN2Q502X0 79 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 TMEM69Q5SWH9 247 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 LYRM7Q5U5X0 104 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 MORN3Q6PF18 240 aaPredicted RBP3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 ZNF826PQ6ZT77 177 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 LINC01551Q86U37 167 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 GPHB5Q86YW7 130 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 NUP35Q8NFH5 326 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 OR5A1Q8NGJ0 315 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 OR51A4Q8NGJ6 313 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 OR10D4PQ8NGN7 298 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 S100ZQ8WXG8 99 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 SLC25A46Q96AG3 418 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 TM2D3Q9BRN9 247 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 PTPN13Q12923 2485 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 IGLV1-50A0A075B6I6 118 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 TRAV9-1A0A075B6T8 112 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 IGKV1-9A0A0C4DH69 117 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 LINC00862A6NCI5 91 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 H3BSH0 61 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 YPEL1O60688 119 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 VEGFCP49767 419 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 RPS25P62851 125 aaKnown RBP3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 Q1RN00 199 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 OR8I2Q8N0Y5 310 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 TMEM256Q8N2U0 113 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 TCTEX1D1Q8N7M0 179 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 Q8N7P7 452 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 ARL11Q969Q4 196 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 YPEL2Q96QA6 119 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 TP53RKQ96S44 253 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 SPIN2AQ99865 258 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 RNF5Q99942 180 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 SPIN2BQ9BPZ2 258 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 AK3Q9UIJ7 227 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 SCP2D1Q9UJQ7 156 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 CFAP46Q8IYW2 2715 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 IGKV1D-17A0A075B6S4 117 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 IGHV3OR15-7A0A075B7D8 119 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 TRBV6-6A0A0A6YYG2 114 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 ZFP92A6NM28 416 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 C17orf98A8MV24 154 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 TMEM14DPA8MWL7 114 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 LYNX1G3V0Z9 82 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 K7ERU9 68 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 SDCBPO00560 298 aaPredicted RBP3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 GEMIN2O14893 280 aaKnown RBP3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 ZNF705DP0CH99 300 aaPredicted RBP3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 LYNX1P0DP58 116 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 CD28P10747 220 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 HIST1H1DP16402 221 aaKnown RBP3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 NFYBP25208 207 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 INSL3P51460 131 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 CATR1Q13166 79 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 RTL8BQ17RB0 113 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 XAF1Q6GPH4 301 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 KTN1-AS1Q86SY8 53 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 VSTM2AQ8TAG5 236 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 C16orf74Q96GX8 76 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 GAFA1Q96PS6 74 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 TMEM133Q9H2Q1 129 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 COMMD3Q9UBI1 195 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 CELA1Q9UNI1 258 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 PLCE1Q9P212 2302 aa3.59□□□□□ -1.84
VPS35P1-201ENST00000563400 USP9XQ93008 2570 aaPredicted RBP3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 ROS1P08922 2347 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 USF3Q68DE3 2245 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 IGHV7-4-1A0A0J9YVY3 117 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 IGHV3-64DA0A0J9YX35 117 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 NAP1L6A6NFF2 107 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 GABARAPH6UMI1 98 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 M0R2Z0 102 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 OVOL1O14753 267 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 LY6HO94772 140 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 IGHV1-69P01742 117 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 APCSP02743 223 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 IGHV1-8P0DP01 117 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 BCL2P10415 239 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 ETV6P41212 452 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 MSMO1Q15800 293 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 Q5XG85 94 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 TMEM91Q6ZNR0 172 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 LHFPL1Q86WI0 220 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 ZNF709Q8N972 641 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 OR10AC1Q8NH08 325 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 OPRPNQ99935 248 aaPredicted RBP3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 SHANK2-AS3Q9BTD1 123 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 BANF2Q9H503 90 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 LINC00574Q9H8X3 128 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 TAF9BQ9HBM6 251 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 TNFSF18Q9UNG2 199 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 MOB4Q9Y3A3 225 aa3.58□□□□□ -1.84
VPS35P1-201ENST00000563400 NOTCH2Q04721 2471 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms