RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 MRPL36Q9P0J6 103 aaKnown RBP10.43□□□□□ -0.74
CLK3-206ENST00000562078 U3KQK5 164 aa10.43□□□□□ -0.74
CLK3-206ENST00000562078 TACC2O95359 2948 aa10.42□□□□□ -0.74
CLK3-206ENST00000562078 IGLV2-11P01706 119 aa10.42□□□□□ -0.74
CLK3-206ENST00000562078 TMEM30BQ3MIR4 351 aa10.42□□□□□ -0.74
CLK3-206ENST00000562078 ZFP2Q6ZN57 461 aa10.42□□□□□ -0.74
CLK3-206ENST00000562078 C8orf46Q8TAG6 207 aa10.42□□□□□ -0.74
CLK3-206ENST00000562078 BBC3Q96PG8 261 aaPredicted RBP10.42□□□□□ -0.74
CLK3-206ENST00000562078 CTSZQ9UBR2 303 aa10.42□□□□□ -0.74
CLK3-206ENST00000562078 A4D1N5 150 aa10.42□□□□□ -0.74
CLK3-206ENST00000562078 RHODO00212 210 aa10.42□□□□□ -0.74
CLK3-206ENST00000562078 EVI2AP22794 236 aa10.42□□□□□ -0.74
CLK3-206ENST00000562078 MRPL51Q4U2R6 128 aaKnown RBP10.42□□□□□ -0.74
CLK3-206ENST00000562078 TMEM200BQ69YZ2 307 aa10.42□□□□□ -0.74
CLK3-206ENST00000562078 GOLT1AQ6ZVE7 132 aa10.42□□□□□ -0.74
CLK3-206ENST00000562078 OR1L8Q8NGR8 309 aa10.42□□□□□ -0.74
CLK3-206ENST00000562078 ITLN2Q8WWU7 325 aaPredicted RBP10.42□□□□□ -0.74
CLK3-206ENST00000562078 NDUFB3O43676 98 aa10.41□□□□□ -0.74
CLK3-206ENST00000562078 SCGB2A1O75556 95 aa10.41□□□□□ -0.74
CLK3-206ENST00000562078 IGKV1-16P04430 117 aa10.41□□□□□ -0.74
CLK3-206ENST00000562078 SRD5A1P18405 259 aa10.41□□□□□ -0.74
CLK3-206ENST00000562078 FAM104BQ5XKR9 115 aa10.41□□□□□ -0.74
CLK3-206ENST00000562078 TEN1Q86WV5 123 aa10.41□□□□□ -0.74
CLK3-206ENST00000562078 FOXC2Q99958 501 aa10.41□□□□□ -0.74
CLK3-206ENST00000562078 RAB1BQ9H0U4 201 aa10.41□□□□□ -0.74
CLK3-206ENST00000562078 TMEM160Q9NX00 188 aa10.41□□□□□ -0.74
CLK3-206ENST00000562078 UPK2O00526 184 aa10.41□□□□□ -0.74
CLK3-206ENST00000562078 ZNF688P0C7X2 276 aa10.41□□□□□ -0.74
CLK3-206ENST00000562078 TAL2Q16559 108 aa10.41□□□□□ -0.74
CLK3-206ENST00000562078 ZNF493Q6ZR52 646 aa10.41□□□□□ -0.74
CLK3-206ENST00000562078 TMEM158Q8WZ71 300 aa10.41□□□□□ -0.74
CLK3-206ENST00000562078 TMEM133Q9H2Q1 129 aa10.41□□□□□ -0.74
CLK3-206ENST00000562078 PLXNB1O43157 2135 aa10.4□□□□□ -0.74
CLK3-206ENST00000562078 MALRD1Q5VYJ5 2156 aa10.4□□□□□ -0.74
CLK3-206ENST00000562078 TRBV7-3A0A075B6L6 115 aa10.4□□□□□ -0.74
CLK3-206ENST00000562078 TRAV40A0A0B4J280 105 aa10.4□□□□□ -0.74
CLK3-206ENST00000562078 LOC107984156A0A0G2JMH3 177 aa10.4□□□□□ -0.74
CLK3-206ENST00000562078 ARL17AQ8IVW1 177 aa10.4□□□□□ -0.74
CLK3-206ENST00000562078 EXOC3-AS1Q8N2X6 119 aa10.4□□□□□ -0.74
CLK3-206ENST00000562078 PPDPFQ9H3Y8 114 aa10.4□□□□□ -0.74
CLK3-206ENST00000562078 E7EUB6 86 aa10.4□□□□□ -0.75
CLK3-206ENST00000562078 HOXA3O43365 443 aaPredicted RBP10.4□□□□□ -0.75
CLK3-206ENST00000562078 LEPP41159 167 aa10.4□□□□□ -0.75
CLK3-206ENST00000562078 ATP5J2P56134 94 aa10.4□□□□□ -0.75
CLK3-206ENST00000562078 RUSC1-AS1Q66K80 236 aa10.4□□□□□ -0.75
CLK3-206ENST00000562078 MRPL20Q9BYC9 149 aaKnown RBP10.4□□□□□ -0.75
CLK3-206ENST00000562078 TRAV4A0A0B4J268 109 aa10.39□□□□□ -0.75
CLK3-206ENST00000562078 CRLF1O75462 422 aa10.39□□□□□ -0.75
CLK3-206ENST00000562078 IL4P05112 153 aa10.39□□□□□ -0.75
CLK3-206ENST00000562078 LOXP28300 417 aaPredicted RBP10.39□□□□□ -0.75
CLK3-206ENST00000562078 CKS2P33552 79 aa10.39□□□□□ -0.75
CLK3-206ENST00000562078 GAGE2BQ13066 116 aa10.39□□□□□ -0.75
CLK3-206ENST00000562078 GAGE2EQ4V326 116 aa10.39□□□□□ -0.75
CLK3-206ENST00000562078 LYZL1Q6UWQ5 148 aa10.39□□□□□ -0.75
CLK3-206ENST00000562078 FAM159AQ6UWV7 190 aa10.39□□□□□ -0.75
CLK3-206ENST00000562078 GAGE2DQ9UEU5 116 aa10.39□□□□□ -0.75
CLK3-206ENST00000562078 VPREB3Q9UKI3 123 aa10.39□□□□□ -0.75
CLK3-206ENST00000562078 LYNX1G3V0Z9 82 aa10.39□□□□□ -0.75
CLK3-206ENST00000562078 DPM2O94777 84 aa10.39□□□□□ -0.75
CLK3-206ENST00000562078 LYNX1P0DP58 116 aa10.39□□□□□ -0.75
CLK3-206ENST00000562078 GP9P14770 177 aa10.39□□□□□ -0.75
CLK3-206ENST00000562078 CRIP1P50238 77 aa10.39□□□□□ -0.75
CLK3-206ENST00000562078 ZNF833PQ6ZTB9 187 aa10.39□□□□□ -0.75
CLK3-206ENST00000562078 POU2AF1Q16633 256 aa10.38□□□□□ -0.75
CLK3-206ENST00000562078 FBXL15Q9H469 300 aa10.38□□□□□ -0.75
CLK3-206ENST00000562078 LINC01549A6NIU2 74 aa10.38□□□□□ -0.75
CLK3-206ENST00000562078 M0QXV9 152 aa10.38□□□□□ -0.75
CLK3-206ENST00000562078 GAS8-AS1O95177 125 aa10.38□□□□□ -0.75
CLK3-206ENST00000562078 PSMG4Q5JS54 123 aa10.38□□□□□ -0.75
CLK3-206ENST00000562078 H3BVH4 76 aa10.37□□□□□ -0.75
CLK3-206ENST00000562078 TGFAP01135 160 aa10.37□□□□□ -0.75
CLK3-206ENST00000562078 IFITM1P13164 125 aa10.37□□□□□ -0.75
CLK3-206ENST00000562078 ZNF672Q499Z4 452 aaPredicted RBP10.37□□□□□ -0.75
CLK3-206ENST00000562078 TTC32Q5I0X7 151 aa10.37□□□□□ -0.75
CLK3-206ENST00000562078 MRPL35Q9NZE8 188 aaKnown RBP10.37□□□□□ -0.75
CLK3-206ENST00000562078 ARHGAP32A7KAX9 2087 aa10.37□□□□□ -0.75
CLK3-206ENST00000562078 ABCA1O95477 2261 aa10.37□□□□□ -0.75
CLK3-206ENST00000562078 SAA1P0DJI8 122 aaPredicted RBP10.36□□□□□ -0.75
CLK3-206ENST00000562078 ZNF843Q8N446 348 aa10.36□□□□□ -0.75
CLK3-206ENST00000562078 ANKRD29Q8N6D5 301 aa10.36□□□□□ -0.75
CLK3-206ENST00000562078 KAAG1Q9UBP8 84 aa10.36□□□□□ -0.75
CLK3-206ENST00000562078 FLNCQ14315 2725 aa10.36□□□□□ -0.75
CLK3-206ENST00000562078 HLA-DRB4P13762 266 aa10.36□□□□□ -0.75
CLK3-206ENST00000562078 TWIST1Q15672 202 aa10.36□□□□□ -0.75
CLK3-206ENST00000562078 C3orf56Q8N813 242 aa10.36□□□□□ -0.75
CLK3-206ENST00000562078 HLA-DRB4X5D2U9 266 aa10.36□□□□□ -0.75
CLK3-206ENST00000562078 CENPVL3A0A0U1RRI6 287 aa10.35□□□□□ -0.75
CLK3-206ENST00000562078 DLX6P56179 175 aa10.35□□□□□ -0.75
CLK3-206ENST00000562078 ATP5IP56385 69 aaPredicted RBP10.35□□□□□ -0.75
CLK3-206ENST00000562078 TMEM155Q4W5P6 130 aa10.35□□□□□ -0.75
CLK3-206ENST00000562078 VCX2Q9H322 139 aa10.35□□□□□ -0.75
CLK3-206ENST00000562078 C19orf84I3L1E1 186 aa10.35□□□□□ -0.75
CLK3-206ENST00000562078 SNCGO76070 127 aa10.35□□□□□ -0.75
CLK3-206ENST00000562078 ERHP84090 104 aaKnown RBP10.35□□□□□ -0.75
CLK3-206ENST00000562078 Q6ZQT7 251 aa10.35□□□□□ -0.75
CLK3-206ENST00000562078 MAP1LC3AQ9H492 121 aa10.35□□□□□ -0.75
CLK3-206ENST00000562078 MYO18BQ8IUG5 2567 aa10.35□□□□□ -0.75
CLK3-206ENST00000562078 ZNF462Q96JM2 2506 aa10.35□□□□□ -0.75
CLK3-206ENST00000562078 TMEM262E9PQX1 116 aa10.34□□□□□ -0.75
CLK3-206ENST00000562078 DLX1P56177 255 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms