RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 C3orf56Q8N813 242 aa13.31□□□□□ -0.28
SHOX-204ENST00000554971 C17orf77Q96MU5 243 aa13.31□□□□□ -0.28
SHOX-204ENST00000554971 SSBP4Q9BWG4 385 aaPredicted RBP13.31□□□□□ -0.28
SHOX-204ENST00000554971 RABAC1Q9UI14 185 aa13.31□□□□□ -0.28
SHOX-204ENST00000554971 LOC102724200A0A096LPH7 203 aaPredicted RBP13.31□□□□□ -0.28
SHOX-204ENST00000554971 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.31□□□□□ -0.28
SHOX-204ENST00000554971 A0A1B0GV90 55 aa13.31□□□□□ -0.28
SHOX-204ENST00000554971 CTSGP08311 255 aa13.31□□□□□ -0.28
SHOX-204ENST00000554971 ZC2HC1AQ96GY0 325 aa13.31□□□□□ -0.28
SHOX-204ENST00000554971 KLK15Q9H2R5 256 aa13.31□□□□□ -0.28
SHOX-204ENST00000554971 M0R2Z0 102 aa13.3□□□□□ -0.28
SHOX-204ENST00000554971 OR5AL1P0C617 328 aa13.3□□□□□ -0.28
SHOX-204ENST00000554971 NTF3P20783 257 aa13.3□□□□□ -0.28
SHOX-204ENST00000554971 CTRLP40313 264 aa13.3□□□□□ -0.28
SHOX-204ENST00000554971 RNF152Q8N8N0 203 aa13.3□□□□□ -0.28
SHOX-204ENST00000554971 ATP6V0BQ99437 205 aa13.3□□□□□ -0.28
SHOX-204ENST00000554971 CITED2Q99967 270 aaPredicted RBP13.3□□□□□ -0.28
SHOX-204ENST00000554971 SNHG12Q9BXW3 62 aa13.3□□□□□ -0.28
SHOX-204ENST00000554971 PAM16Q9Y3D7 125 aa13.3□□□□□ -0.28
SHOX-204ENST00000554971 ZNF785A8K8V0 405 aa13.29□□□□□ -0.28
SHOX-204ENST00000554971 BTF3P20290 206 aaKnown RBP13.29□□□□□ -0.28
SHOX-204ENST00000554971 TDRG1Q3Y452 100 aa13.29□□□□□ -0.28
SHOX-204ENST00000554971 ZNF705AQ6ZN79 300 aaPredicted RBP13.29□□□□□ -0.28
SHOX-204ENST00000554971 FAM19A2Q8N3H0 131 aa13.29□□□□□ -0.28
SHOX-204ENST00000554971 NOTCH1P46531 2555 aa13.29□□□□□ -0.28
SHOX-204ENST00000554971 ADARB2-AS1A8MUL3 147 aa13.29□□□□□ -0.28
SHOX-204ENST00000554971 NUTF2P61970 127 aaKnown RBP13.29□□□□□ -0.28
SHOX-204ENST00000554971 RNASEKQ6P5S7 137 aaKnown RBP13.29□□□□□ -0.28
SHOX-204ENST00000554971 RPLP1P05386 114 aaKnown RBP13.28□□□□□ -0.28
SHOX-204ENST00000554971 RPS20P60866 119 aaKnown RBP13.28□□□□□ -0.28
SHOX-204ENST00000554971 SPATA3Q8NHX4 192 aa13.28□□□□□ -0.28
SHOX-204ENST00000554971 FOXE3Q13461 319 aa13.27□□□□□ -0.28
SHOX-204ENST00000554971 OR4X2Q8NGF9 303 aa13.27□□□□□ -0.28
SHOX-204ENST00000554971 ZNF502Q8TBZ5 544 aa13.27□□□□□ -0.28
SHOX-204ENST00000554971 MYOZ3Q8TDC0 251 aa13.27□□□□□ -0.28
SHOX-204ENST00000554971 UQCR10Q9UDW1 63 aa13.27□□□□□ -0.28
SHOX-204ENST00000554971 CRXO43186 299 aaPredicted RBP13.27□□□□□ -0.29
SHOX-204ENST00000554971 LINC00614P0C842 121 aa13.27□□□□□ -0.29
SHOX-204ENST00000554971 ZNF493Q6ZR52 646 aa13.27□□□□□ -0.29
SHOX-204ENST00000554971 C18orf65Q6ZTR6 163 aa13.27□□□□□ -0.29
SHOX-204ENST00000554971 A0A087X0K7 114 aa13.26□□□□□ -0.29
SHOX-204ENST00000554971 OR2T8A6NH00 312 aa13.26□□□□□ -0.29
SHOX-204ENST00000554971 EREGO14944 169 aa13.26□□□□□ -0.29
SHOX-204ENST00000554971 ELANEP08246 267 aa13.26□□□□□ -0.29
SHOX-204ENST00000554971 SPATA45Q537H7 98 aa13.26□□□□□ -0.29
SHOX-204ENST00000554971 C2orf70A6NJV1 201 aa13.25□□□□□ -0.29
SHOX-204ENST00000554971 BMI1P35226 326 aa13.25□□□□□ -0.29
SHOX-204ENST00000554971 CRIP1P50238 77 aa13.25□□□□□ -0.29
SHOX-204ENST00000554971 S4R3C0 116 aa13.25□□□□□ -0.29
SHOX-204ENST00000554971 M0R3E3 92 aa13.25□□□□□ -0.29
SHOX-204ENST00000554971 PF4V1P10720 104 aa13.25□□□□□ -0.29
SHOX-204ENST00000554971 SHISA2Q6UWI4 295 aa13.25□□□□□ -0.29
SHOX-204ENST00000554971 URB1-AS1Q96HZ7 61 aa13.25□□□□□ -0.29
SHOX-204ENST00000554971 TMEM70Q9BUB7 260 aa13.25□□□□□ -0.29
SHOX-204ENST00000554971 TRAV9-2A0A087WT02 112 aa13.23□□□□□ -0.29
SHOX-204ENST00000554971 TRBV7-1A0A0A6YYK4 115 aa13.23□□□□□ -0.29
SHOX-204ENST00000554971 TMEM189A5PLL7 270 aa13.23□□□□□ -0.29
SHOX-204ENST00000554971 RBAKDNA6NC62 111 aa13.23□□□□□ -0.29
SHOX-204ENST00000554971 BRI3O95415 125 aa13.23□□□□□ -0.29
SHOX-204ENST00000554971 C15orf32Q32M92 178 aa13.23□□□□□ -0.29
SHOX-204ENST00000554971 EBLN2Q6P2I7 272 aa13.23□□□□□ -0.29
SHOX-204ENST00000554971 PRR25Q96S07 402 aa13.23□□□□□ -0.29
SHOX-204ENST00000554971 IGLC3P0DOY3 106 aa13.23□□□□□ -0.29
SHOX-204ENST00000554971 RHOGP84095 191 aa13.23□□□□□ -0.29
SHOX-204ENST00000554971 EEF1AKMT3Q96AZ1 226 aa13.23□□□□□ -0.29
SHOX-204ENST00000554971 SLC50A1Q9BRV3 221 aa13.23□□□□□ -0.29
SHOX-204ENST00000554971 TSSC4Q9Y5U2 329 aaPredicted RBP13.23□□□□□ -0.29
SHOX-204ENST00000554971 A0A1W2PRX2 142 aa13.22□□□□□ -0.29
SHOX-204ENST00000554971 H3BUA1 57 aa13.22□□□□□ -0.29
SHOX-204ENST00000554971 ARMS2P0C7Q2 107 aa13.22□□□□□ -0.29
SHOX-204ENST00000554971 KHDC1LQ5JSQ8 128 aa13.22□□□□□ -0.29
SHOX-204ENST00000554971 TRGV3P03979 118 aa13.21□□□□□ -0.29
SHOX-204ENST00000554971 RELQ04864 619 aaPredicted RBP13.21□□□□□ -0.29
SHOX-204ENST00000554971 NSUN5P1Q3KNT7 163 aa13.21□□□□□ -0.29
SHOX-204ENST00000554971 ZFAND3Q9H8U3 227 aa13.21□□□□□ -0.29
SHOX-204ENST00000554971 CLEC5AQ9NY25 188 aa13.21□□□□□ -0.29
SHOX-204ENST00000554971 HSPB8Q9UJY1 196 aa13.21□□□□□ -0.29
SHOX-204ENST00000554971 SMAD5-AS1Q9Y6J3 95 aa13.21□□□□□ -0.29
SHOX-204ENST00000554971 DNAH3Q8TD57 4116 aa13.21□□□□□ -0.29
SHOX-204ENST00000554971 IGHV1-24A0A0C4DH33 117 aa13.21□□□□□ -0.3
SHOX-204ENST00000554971 BUB3O43684 328 aa13.21□□□□□ -0.3
SHOX-204ENST00000554971 LEPROTL1O95214 131 aa13.21□□□□□ -0.3
SHOX-204ENST00000554971 CLEC3BP05452 202 aa13.21□□□□□ -0.3
SHOX-204ENST00000554971 NDUFA11Q86Y39 141 aa13.21□□□□□ -0.3
SHOX-204ENST00000554971 SH2D1AO60880 128 aa13.2□□□□□ -0.3
SHOX-204ENST00000554971 IGHV3-23P01764 117 aa13.2□□□□□ -0.3
SHOX-204ENST00000554971 PET117Q6UWS5 81 aa13.2□□□□□ -0.3
SHOX-204ENST00000554971 MRPL53Q96EL3 112 aaKnown RBP13.2□□□□□ -0.3
SHOX-204ENST00000554971 UBE2E2Q96LR5 201 aa13.2□□□□□ -0.3
SHOX-204ENST00000554971 C8orf49Q96NF6 230 aa13.2□□□□□ -0.3
SHOX-204ENST00000554971 TCAPO15273 167 aa13.19□□□□□ -0.3
SHOX-204ENST00000554971 DEFB136Q30KP8 78 aa13.19□□□□□ -0.3
SHOX-204ENST00000554971 LCN12Q6JVE5 192 aa13.19□□□□□ -0.3
SHOX-204ENST00000554971 C8orf86Q6ZUL3 223 aa13.19□□□□□ -0.3
SHOX-204ENST00000554971 MRPS16Q9Y3D3 137 aaKnown RBP13.19□□□□□ -0.3
SHOX-204ENST00000554971 U3KQK5 164 aa13.19□□□□□ -0.3
SHOX-204ENST00000554971 SYS1-DBNDD2H3BUS1 97 aa13.19□□□□□ -0.3
SHOX-204ENST00000554971 IGHV3-11P01762 117 aa13.19□□□□□ -0.3
SHOX-204ENST00000554971 GPR183P32249 361 aa13.19□□□□□ -0.3
SHOX-204ENST00000554971 KLHL30-AS1Q8NEE0 82 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms