RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SPTA1P02549 2419 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 ORM1P02763 201 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 SMIM13P0DJ93 91 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 FABP2P12104 132 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 GRNP28799 593 aaKnown RBP4.19□□□□□ -1.74
LIMA1-212ENST00000552491 FCER1GP30273 86 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 PHLDA1Q8WV24 401 aaPredicted RBP4.19□□□□□ -1.74
LIMA1-212ENST00000552491 NXT2Q9NPJ8 142 aaKnown RBP4.19□□□□□ -1.74
LIMA1-212ENST00000552491 C21orf62Q9NYP8 219 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 C11orf21Q9P2W6 132 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 SPTBN1Q01082 2364 aaKnown RBP4.19□□□□□ -1.74
LIMA1-212ENST00000552491 IGLV2-18A0A075B6J9 118 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 FABP5P3A8MUU1 101 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 TNFRSF6BO95407 300 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 TRGV3P03979 118 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 GCSHP23434 173 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 ZNF672Q499Z4 452 aaPredicted RBP4.18□□□□□ -1.74
LIMA1-212ENST00000552491 C8orf86Q6ZUL3 223 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 GTSCR1Q86UQ5 136 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 TTC9CQ8N5M4 171 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 RNF182Q8N6D2 247 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 OR11H6Q8NGC7 330 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 ARPC1AQ92747 370 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 SMPXQ9UHP9 88 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 CELSR1Q9NYQ6 3014 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 CEP295Q9C0D2 2601 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 IGKV3D-20A0A0C4DH25 116 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 TMEM238C9JI98 176 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 SMIM17P0DL12 118 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 TNP2Q05952 138 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 SAMD5Q5TGI4 173 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 IL17RELQ6ZVW7 336 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 MAPKAPK5-AS1Q8N8E1 139 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 TMEM158Q8WZ71 300 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 SPTBN4Q9H254 2564 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 AKAP6Q13023 2319 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 TRBV25-1A0A075B6N4 114 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 IGHV3OR16-13A0A075B7E8 117 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 IGHV3-74A0A0B4J1X5 117 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 TRAV26-2A0A0B4J265 109 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 IGHV3-66A0A0C4DH42 116 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 NCBP2LA6PVI3 153 aaKnown RBP4.18□□□□□ -1.74
LIMA1-212ENST00000552491 ODF3BA8MYP8 253 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 PAX4O43316 350 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 SCGB2A1O75556 95 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 IGKCP01834 107 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 PRSS1P07477 247 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 CD3EP07766 207 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 DTX2Q86UW9 622 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 FOXC2Q99958 501 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 CHAC1Q9BUX1 264 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 KRTAP4-2Q9BYR5 136 aa4.18□□□□□ -1.74
LIMA1-212ENST00000552491 PTPRQQ9UMZ3 2332 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 TEX48A0A1B0GUV7 120 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 TMEM8BA6NDV4 472 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 ZNF207O43670 478 aaKnown RBP4.17□□□□□ -1.74
LIMA1-212ENST00000552491 ATP5LO75964 103 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 HLA-DRB4P13762 266 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 OXLD1Q5BKU9 147 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 ZC2HC1BQ5TFG8 222 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 Q8N6K4 173 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 Q8N8P6 123 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 TM2D2Q9BX73 214 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 HLA-DRB4X5D2U9 266 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 IGHV3-49A0A0A0MS15 119 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 IGHV7-81A0A0B4J1V7 117 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 TRAV40A0A0B4J280 105 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 DPM2O94777 84 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 SRSF1Q07955 248 aaKnown RBP eCLIP4.17□□□□□ -1.74
LIMA1-212ENST00000552491 CDSNQ15517 529 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 NRACQ8N912 160 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 TMEM160Q9NX00 188 aa4.17□□□□□ -1.74
LIMA1-212ENST00000552491 NHP2Q9NX24 153 aaKnown RBP4.17□□□□□ -1.74
LIMA1-212ENST00000552491 MRPL35Q9NZE8 188 aaKnown RBP4.17□□□□□ -1.74
LIMA1-212ENST00000552491 IGHV7-4-1A0A0J9YVY3 117 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 CLPSL1A2RUU4 121 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 RBAKDNA6NC62 111 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 PRSS47A8MTI9 375 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 SPRY2O43597 315 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 BUB3O43684 328 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 GOSR1O95249 250 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 PRTN3P24158 256 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 EFNA4P52798 201 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 CEND1Q8N111 149 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 AGPAT4-IT1Q9H0P7 198 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 ATRXP46100 2492 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 TRAV8-2A0A0B4J237 113 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 LINC01548A6NM66 108 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 FAM90A27PA6NNH2 459 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 M0R1W7 72 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 RAB9AP51151 201 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 VMO1Q7Z5L0 202 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 MYOZ3Q8TDC0 251 aa4.16□□□□□ -1.74
LIMA1-212ENST00000552491 E9PLD3 99 aa4.15□□□□□ -1.74
LIMA1-212ENST00000552491 CLEC3BP05452 202 aa4.15□□□□□ -1.74
LIMA1-212ENST00000552491 RPL24P83731 157 aaKnown RBP4.15□□□□□ -1.74
LIMA1-212ENST00000552491 EBI3Q14213 229 aa4.15□□□□□ -1.74
LIMA1-212ENST00000552491 WFDC2Q14508 124 aa4.15□□□□□ -1.74
LIMA1-212ENST00000552491 LAGE3Q14657 143 aa4.15□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms