RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 TMEM258P61165 79 aa6.21□□□□□ -1.42
VPS13D-211ENST00000543710 ZNF726P1Q15940 193 aa6.21□□□□□ -1.42
VPS13D-211ENST00000543710 CFHR4Q92496 578 aa6.21□□□□□ -1.42
VPS13D-211ENST00000543710 LAMTOR3Q9UHA4 124 aa6.21□□□□□ -1.42
VPS13D-211ENST00000543710 TP53TG1Q9Y2A0 90 aa6.21□□□□□ -1.42
VPS13D-211ENST00000543710 NPSP0C0P6 89 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 DEFB112Q30KQ8 113 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 FAM201AQ5SY85 155 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 ODF3Q96PU9 254 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 PRO1854Q9UHT4 67 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 SCN3AQ9NY46 2000 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 MUC21A0A0G2JKD1 596 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 MUC21A0A140T8X8 626 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 hDV102S1A0JD36 115 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 IGLC7A0M8Q6 106 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 SRRM4A7MD48 611 aaKnown RBP6.2□□□□□ -1.42
VPS13D-211ENST00000543710 H0YGX0 51 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 SPART-AS1P0CW21 52 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 TICRRQ7Z2Z1 1910 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 FAM208BQ5VWN6 2430 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 AZU1P20160 251 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 SPTAN1Q13813 2472 aaKnown RBP6.2□□□□□ -1.42
VPS13D-211ENST00000543710 IGKV3OR2-268A0A0C4DH90 116 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 NUPR2A6NF83 97 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 H3BMG7 143 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 H7C423 109 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 MPV17L2Q567V2 206 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 GATD1Q8NB37 220 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 IGF2BP2-AS1Q96M15 143 aa6.2□□□□□ -1.42
VPS13D-211ENST00000543710 RSPO3Q9BXY4 272 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-211ENST00000543710 COL4A4P53420 1690 aaPredicted RBP6.19□□□□□ -1.42
VPS13D-211ENST00000543710 PAX4O43316 350 aa6.19□□□□□ -1.42
VPS13D-211ENST00000543710 GFI1BQ5VTD9 330 aa6.19□□□□□ -1.42
VPS13D-211ENST00000543710 C2orf66Q6UXQ4 117 aa6.19□□□□□ -1.42
VPS13D-211ENST00000543710 IGKV1-6A0A0C4DH72 117 aa6.19□□□□□ -1.42
VPS13D-211ENST00000543710 C6orf226Q5I0X4 101 aa6.19□□□□□ -1.42
VPS13D-211ENST00000543710 ODF3L1Q8IXM7 274 aa6.19□□□□□ -1.42
VPS13D-211ENST00000543710 SPATA3Q8NHX4 192 aa6.19□□□□□ -1.42
VPS13D-211ENST00000543710 C16orf74Q96GX8 76 aa6.19□□□□□ -1.42
VPS13D-211ENST00000543710 VWA8A3KMH1 1905 aa6.19□□□□□ -1.42
VPS13D-211ENST00000543710 ZC2HC1BQ5TFG8 222 aa6.19□□□□□ -1.42
VPS13D-211ENST00000543710 RALGAPA1Q6GYQ0 2036 aa6.19□□□□□ -1.42
VPS13D-211ENST00000543710 A0A0G2JRQ6 117 aa6.19□□□□□ -1.42
VPS13D-211ENST00000543710 CCL25O15444 150 aa6.19□□□□□ -1.42
VPS13D-211ENST00000543710 DAZ2Q13117 558 aaKnown RBP6.19□□□□□ -1.42
VPS13D-211ENST00000543710 C9orf153Q5TBE3 101 aa6.19□□□□□ -1.42
VPS13D-211ENST00000543710 DAZ4Q86SG3 579 aaKnown RBP6.19□□□□□ -1.42
VPS13D-211ENST00000543710 DAZ3Q9NR90 486 aaKnown RBP6.19□□□□□ -1.42
VPS13D-211ENST00000543710 ARID1BQ8NFD5 2236 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-211ENST00000543710 TRGV1A0A0A0MS02 117 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 NPYP01303 97 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 DSCR8Q96T75 97 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 SCRT2Q9NQ03 307 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 TRAV12-3A0A0B4J271 114 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 SNAI2O43623 268 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 PDE6GP18545 87 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 RUSC1-AS1Q66K80 236 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 C8orf49Q96NF6 230 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 WI2-2373I1.2A0A1W2PRP0 233 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 HOXB4P17483 251 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-211ENST00000543710 GAGE2AQ6NT46 116 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 NFE4Q86UQ8 179 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 K7EMT4 169 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 ARMS2P0C7Q2 107 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 PRIMA1Q86XR5 153 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 KLHDC3Q9BQ90 382 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 U3KQK5 164 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 OBSL1O75147 1896 aa6.18□□□□□ -1.42
VPS13D-211ENST00000543710 ZFHX2Q9C0A1 2572 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-211ENST00000543710 C5orf47Q569G3 176 aa6.17□□□□□ -1.42
VPS13D-211ENST00000543710 NUP210LQ5VU65 1888 aa6.17□□□□□ -1.42
VPS13D-211ENST00000543710 TTC28Q96AY4 2481 aa6.17□□□□□ -1.42
VPS13D-211ENST00000543710 DIDO1Q9BTC0 2240 aaKnown RBP6.17□□□□□ -1.42
VPS13D-211ENST00000543710 PLXNB3Q9ULL4 1909 aa6.17□□□□□ -1.42
VPS13D-211ENST00000543710 IGHV4-61A0A0C4DH41 118 aa6.17□□□□□ -1.42
VPS13D-211ENST00000543710 IGHV3-48P01763 117 aa6.17□□□□□ -1.42
VPS13D-211ENST00000543710 ORMDL1Q9P0S3 153 aa6.17□□□□□ -1.42
VPS13D-211ENST00000543710 C11orf86A6NJI1 115 aa6.17□□□□□ -1.42
VPS13D-211ENST00000543710 C9JAW5 83 aa6.17□□□□□ -1.42
VPS13D-211ENST00000543710 F8W735 103 aaPredicted RBP6.17□□□□□ -1.42
VPS13D-211ENST00000543710 K7EP13 123 aa6.17□□□□□ -1.42
VPS13D-211ENST00000543710 DEFB130BP0DP73 79 aa6.17□□□□□ -1.42
VPS13D-211ENST00000543710 DEFB130AP0DP74 79 aa6.17□□□□□ -1.42
VPS13D-211ENST00000543710 GRNP28799 593 aaKnown RBP6.17□□□□□ -1.42
VPS13D-211ENST00000543710 SYNJ2BPP57105 145 aa6.17□□□□□ -1.42
VPS13D-211ENST00000543710 PROK2Q9HC23 129 aa6.17□□□□□ -1.42
VPS13D-211ENST00000543710 SLC25A29Q8N8R3 303 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 TOMM6Q96B49 74 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 LOXP28300 417 aaPredicted RBP6.16□□□□□ -1.42
VPS13D-211ENST00000543710 ZFP2Q6ZN57 461 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 C14orf178Q8N769 122 aaPredicted RBP6.16□□□□□ -1.42
VPS13D-211ENST00000543710 KIAA1549LQ6ZVL6 1849 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 DNAJC9-AS1A6NH13 148 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 IGKV1-39P01597 117 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 IGKV1D-39P04432 117 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 CRYBA4P53673 196 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 NKAPP1Q8N9T2 125 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 SNHG12Q9BXW3 62 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 GPR179Q6PRD1 2367 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 A0A0B4J2C4 111 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms