RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 INMT-MINDY4F8WBC2 141 aa12.26□□□□□ -0.45
PCF11-206ENST00000533018 SIVA1O15304 175 aa12.26□□□□□ -0.45
PCF11-206ENST00000533018 PRAF2O60831 178 aa12.26□□□□□ -0.45
PCF11-206ENST00000533018 UBE2L3P68036 154 aaKnown RBP12.26□□□□□ -0.45
PCF11-206ENST00000533018 ZNF415Q09FC8 603 aa12.26□□□□□ -0.45
PCF11-206ENST00000533018 MUC21Q5SSG8 566 aa12.26□□□□□ -0.45
PCF11-206ENST00000533018 ATP5SQ99766 215 aa12.26□□□□□ -0.45
PCF11-206ENST00000533018 APOBP04114 4563 aaKnown RBP12.26□□□□□ -0.45
PCF11-206ENST00000533018 SSNA1O43805 119 aa12.25□□□□□ -0.45
PCF11-206ENST00000533018 FFAR4Q5NUL3 377 aa12.25□□□□□ -0.45
PCF11-206ENST00000533018 SCGB1C1Q8TD33 95 aa12.25□□□□□ -0.45
PCF11-206ENST00000533018 PPP1R1CQ8WVI7 109 aa12.25□□□□□ -0.45
PCF11-206ENST00000533018 PRO0255Q9UI72 69 aa12.25□□□□□ -0.45
PCF11-206ENST00000533018 HHLA3Q9XRX5 114 aa12.25□□□□□ -0.45
PCF11-206ENST00000533018 IFNA5P01569 189 aa12.24□□□□□ -0.45
PCF11-206ENST00000533018 BTF3P20290 206 aaKnown RBP12.24□□□□□ -0.45
PCF11-206ENST00000533018 H2BFSP57053 126 aa12.24□□□□□ -0.45
PCF11-206ENST00000533018 LINC00315P59091 139 aa12.24□□□□□ -0.45
PCF11-206ENST00000533018 SLAQ13239 276 aa12.24□□□□□ -0.45
PCF11-206ENST00000533018 LYPD1Q8N2G4 141 aa12.24□□□□□ -0.45
PCF11-206ENST00000533018 HYLS1Q96M11 299 aa12.24□□□□□ -0.45
PCF11-206ENST00000533018 C8orf49Q96NF6 230 aa12.24□□□□□ -0.45
PCF11-206ENST00000533018 SMIM3Q9BZL3 60 aa12.24□□□□□ -0.45
PCF11-206ENST00000533018 TRGV4A0A0C4DH28 118 aa12.23□□□□□ -0.45
PCF11-206ENST00000533018 TRBV7-9A0A0J9YWB2 115 aa12.23□□□□□ -0.45
PCF11-206ENST00000533018 RBAKDNA6NC62 111 aa12.23□□□□□ -0.45
PCF11-206ENST00000533018 NXPH4O95158 308 aa12.23□□□□□ -0.45
PCF11-206ENST00000533018 PET100P0DJ07 73 aa12.23□□□□□ -0.45
PCF11-206ENST00000533018 TAS2R45P59539 299 aa12.23□□□□□ -0.45
PCF11-206ENST00000533018 KRTAP10-2P60368 255 aa12.23□□□□□ -0.45
PCF11-206ENST00000533018 KHDC3LQ587J8 217 aa12.23□□□□□ -0.45
PCF11-206ENST00000533018 RPH3ALQ9UNE2 315 aa12.23□□□□□ -0.45
PCF11-206ENST00000533018 CRYBA4P53673 196 aa12.22□□□□□ -0.45
PCF11-206ENST00000533018 IFITM3Q01628 133 aa12.22□□□□□ -0.45
PCF11-206ENST00000533018 ZNF266Q14584 549 aa12.22□□□□□ -0.45
PCF11-206ENST00000533018 MRPL23Q16540 153 aaKnown RBP12.22□□□□□ -0.45
PCF11-206ENST00000533018 FAM159AQ6UWV7 190 aa12.22□□□□□ -0.45
PCF11-206ENST00000533018 MDFICQ9P1T7 246 aa12.22□□□□□ -0.45
PCF11-206ENST00000533018 NAGKQ9UJ70 344 aa12.22□□□□□ -0.45
PCF11-206ENST00000533018 HSPB11Q9Y547 144 aa12.22□□□□□ -0.45
PCF11-206ENST00000533018 DIRC3C9JPN6 131 aa12.21□□□□□ -0.45
PCF11-206ENST00000533018 EIF3GO75821 320 aaKnown RBP eCLIP12.21□□□□□ -0.45
PCF11-206ENST00000533018 MPC2O95563 127 aa12.21□□□□□ -0.45
PCF11-206ENST00000533018 RPL12P30050 165 aaKnown RBP12.21□□□□□ -0.45
PCF11-206ENST00000533018 FHL2Q14192 279 aa12.21□□□□□ -0.45
PCF11-206ENST00000533018 TMEM183BQ1AE95 376 aa12.21□□□□□ -0.45
PCF11-206ENST00000533018 LYPD5Q6UWN5 251 aa12.21□□□□□ -0.45
PCF11-206ENST00000533018 TMEM183AQ8IXX5 376 aa12.21□□□□□ -0.45
PCF11-206ENST00000533018 CMTM2Q8TAZ6 248 aa12.21□□□□□ -0.45
PCF11-206ENST00000533018 SFTA3P0C7M3 94 aa12.2□□□□□ -0.46
PCF11-206ENST00000533018 NEGR1Q7Z3B1 354 aa12.2□□□□□ -0.46
PCF11-206ENST00000533018 TRGV11A0A075B6L2 103 aa12.19□□□□□ -0.46
PCF11-206ENST00000533018 PGPA6NDG6 321 aa12.19□□□□□ -0.46
PCF11-206ENST00000533018 SRIP30626 198 aa12.19□□□□□ -0.46
PCF11-206ENST00000533018 FAM74A1Q5RGS3 127 aa12.19□□□□□ -0.46
PCF11-206ENST00000533018 PCNPQ8WW12 178 aaKnown RBP12.19□□□□□ -0.46
PCF11-206ENST00000533018 MARVELD1Q9BSK0 173 aa12.19□□□□□ -0.46
PCF11-206ENST00000533018 MBD2Q9UBB5 411 aa12.19□□□□□ -0.46
PCF11-206ENST00000533018 A0A1W2PPV4 95 aa12.18□□□□□ -0.46
PCF11-206ENST00000533018 EREGO14944 169 aa12.18□□□□□ -0.46
PCF11-206ENST00000533018 DEFA1P59665 94 aa12.18□□□□□ -0.46
PCF11-206ENST00000533018 DEFA3P59666 94 aa12.18□□□□□ -0.46
PCF11-206ENST00000533018 Q6AWC8 147 aa12.18□□□□□ -0.46
PCF11-206ENST00000533018 ZNF479Q96JC4 524 aa12.18□□□□□ -0.46
PCF11-206ENST00000533018 SPXQ9BT56 116 aa12.18□□□□□ -0.46
PCF11-206ENST00000533018 SCRT2Q9NQ03 307 aa12.18□□□□□ -0.46
PCF11-206ENST00000533018 OTORQ9NRC9 128 aa12.18□□□□□ -0.46
PCF11-206ENST00000533018 LENEPQ9Y5L5 61 aa12.18□□□□□ -0.46
PCF11-206ENST00000533018 TNFRSF18Q9Y5U5 241 aa12.18□□□□□ -0.46
PCF11-206ENST00000533018 TRAV9-2A0A087WT02 112 aa12.17□□□□□ -0.46
PCF11-206ENST00000533018 ACOT6Q3I5F7 207 aaPredicted RBP12.17□□□□□ -0.46
PCF11-206ENST00000533018 Q8N1X5 172 aa12.17□□□□□ -0.46
PCF11-206ENST00000533018 K7EQD1 137 aa12.16□□□□□ -0.46
PCF11-206ENST00000533018 GYPEP15421 78 aa12.16□□□□□ -0.46
PCF11-206ENST00000533018 ERVFC1-1P60608 527 aa12.16□□□□□ -0.46
PCF11-206ENST00000533018 Q6ZRN7 208 aaPredicted RBP12.16□□□□□ -0.46
PCF11-206ENST00000533018 GOLT1AQ6ZVE7 132 aa12.16□□□□□ -0.46
PCF11-206ENST00000533018 OR10G4Q8NGN3 311 aa12.16□□□□□ -0.46
PCF11-206ENST00000533018 RASL10AQ92737 203 aa12.16□□□□□ -0.46
PCF11-206ENST00000533018 LY96Q9Y6Y9 160 aa12.16□□□□□ -0.46
PCF11-206ENST00000533018 HMGB3O15347 200 aaKnown RBP12.15□□□□□ -0.46
PCF11-206ENST00000533018 GNRH2O43555 120 aa12.15□□□□□ -0.46
PCF11-206ENST00000533018 NFE4Q86UQ8 179 aa12.15□□□□□ -0.46
PCF11-206ENST00000533018 IQCF2Q8IXL9 164 aa12.15□□□□□ -0.46
PCF11-206ENST00000533018 OR4C5Q8NGB2 326 aa12.15□□□□□ -0.46
PCF11-206ENST00000533018 TMED6Q8WW62 240 aa12.15□□□□□ -0.46
PCF11-206ENST00000533018 WFDC1Q9HC57 220 aa12.15□□□□□ -0.46
PCF11-206ENST00000533018 PTTG2Q9NZH5 202 aa12.15□□□□□ -0.46
PCF11-206ENST00000533018 TRAV21A0A0B4J279 112 aa12.14□□□□□ -0.47
PCF11-206ENST00000533018 F6UZH7 168 aa12.14□□□□□ -0.47
PCF11-206ENST00000533018 ORM1P02763 201 aa12.14□□□□□ -0.47
PCF11-206ENST00000533018 FUSP35637 526 aaKnown RBP eCLIP12.14□□□□□ -0.47
PCF11-206ENST00000533018 PQLC2Q6ZP29 291 aa12.14□□□□□ -0.47
PCF11-206ENST00000533018 TREM1Q9NP99 234 aa12.14□□□□□ -0.47
PCF11-206ENST00000533018 PGPEP1Q9NXJ5 209 aa12.14□□□□□ -0.47
PCF11-206ENST00000533018 A6NHS1 94 aa12.13□□□□□ -0.47
PCF11-206ENST00000533018 C9JCJ5 164 aa12.13□□□□□ -0.47
PCF11-206ENST00000533018 M0R2P5 195 aa12.13□□□□□ -0.47
PCF11-206ENST00000533018 EVI2AP22794 236 aa12.13□□□□□ -0.47
PCF11-206ENST00000533018 RAB2AP61019 212 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms