RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 KLF12Q9Y4X4 402 aa14.66□□□□□ -0.06
VPS28-203ENST00000524521 LENEPQ9Y5L5 61 aa14.66□□□□□ -0.06
VPS28-203ENST00000524521 GCHFRP30047 84 aa14.65□□□□□ -0.06
VPS28-203ENST00000524521 ARPC5LQ9BPX5 153 aa14.65□□□□□ -0.06
VPS28-203ENST00000524521 ATG101Q9BSB4 218 aa14.65□□□□□ -0.06
VPS28-203ENST00000524521 IGLV2-18A0A075B6J9 118 aa14.64□□□□□ -0.07
VPS28-203ENST00000524521 TRGV2A0A075B6R0 118 aa14.64□□□□□ -0.07
VPS28-203ENST00000524521 TRGV1A0A0A0MS02 117 aa14.64□□□□□ -0.07
VPS28-203ENST00000524521 G3V3Q6 166 aa14.64□□□□□ -0.07
VPS28-203ENST00000524521 GNG5P63218 68 aa14.64□□□□□ -0.07
VPS28-203ENST00000524521 MUC21Q5SSG8 566 aa14.64□□□□□ -0.07
VPS28-203ENST00000524521 ARL6IP6Q8N6S5 226 aa14.64□□□□□ -0.07
VPS28-203ENST00000524521 TMED6Q8WW62 240 aa14.64□□□□□ -0.07
VPS28-203ENST00000524521 ARPC5O15511 151 aa14.63□□□□□ -0.07
VPS28-203ENST00000524521 HOXA5P20719 270 aa14.63□□□□□ -0.07
VPS28-203ENST00000524521 TCL1AP56279 114 aa14.63□□□□□ -0.07
VPS28-203ENST00000524521 IBA57Q5T440 356 aaKnown RBP14.63□□□□□ -0.07
VPS28-203ENST00000524521 ST6GAL2Q96JF0 529 aa14.63□□□□□ -0.07
VPS28-203ENST00000524521 TMPRSS5Q9H3S3 457 aa14.63□□□□□ -0.07
VPS28-203ENST00000524521 TRAV26-1A0A087WT03 109 aa14.62□□□□□ -0.07
VPS28-203ENST00000524521 A0A0J9YY99 117 aa14.62□□□□□ -0.07
VPS28-203ENST00000524521 SMLR1H3BR10 107 aa14.62□□□□□ -0.07
VPS28-203ENST00000524521 CXorf1O96002 111 aa14.62□□□□□ -0.07
VPS28-203ENST00000524521 TRAV8-1A0A0A6YYK1 113 aa14.61□□□□□ -0.07
VPS28-203ENST00000524521 TAAR5O14804 337 aa14.61□□□□□ -0.07
VPS28-203ENST00000524521 SPINK4O60575 86 aa14.61□□□□□ -0.07
VPS28-203ENST00000524521 LGALS9BQ3B8N2 356 aa14.61□□□□□ -0.07
VPS28-203ENST00000524521 Q6AWC8 147 aa14.61□□□□□ -0.07
VPS28-203ENST00000524521 SSX7Q7RTT5 188 aa14.61□□□□□ -0.07
VPS28-203ENST00000524521 IQCF2Q8IXL9 164 aa14.61□□□□□ -0.07
VPS28-203ENST00000524521 SUN5Q8TC36 379 aa14.61□□□□□ -0.07
VPS28-203ENST00000524521 TMEM167BQ9NRX6 74 aa14.61□□□□□ -0.07
VPS28-203ENST00000524521 SUMO1P63165 101 aaKnown RBP14.6□□□□□ -0.07
VPS28-203ENST00000524521 FAM159AQ6UWV7 190 aa14.6□□□□□ -0.07
VPS28-203ENST00000524521 SGK494Q96LW2 274 aa14.6□□□□□ -0.07
VPS28-203ENST00000524521 TREM1Q9NP99 234 aa14.6□□□□□ -0.07
VPS28-203ENST00000524521 CCL18P55774 89 aa14.59□□□□□ -0.07
VPS28-203ENST00000524521 FAM3BP58499 235 aaPredicted RBP14.59□□□□□ -0.07
VPS28-203ENST00000524521 ZNF415Q09FC8 603 aa14.59□□□□□ -0.07
VPS28-203ENST00000524521 C5orf17Q8NAS9 161 aa14.59□□□□□ -0.07
VPS28-203ENST00000524521 TVP23CQ96ET8 276 aa14.59□□□□□ -0.07
VPS28-203ENST00000524521 MRPL16Q9NX20 251 aaKnown RBP14.59□□□□□ -0.07
VPS28-203ENST00000524521 NACAE9PAV3 2078 aa14.59□□□□□ -0.07
VPS28-203ENST00000524521 ZNF726P1Q15940 193 aa14.58□□□□□ -0.08
VPS28-203ENST00000524521 TMEM183BQ1AE95 376 aa14.58□□□□□ -0.08
VPS28-203ENST00000524521 AKR1C8PQ5T2L2 129 aa14.58□□□□□ -0.08
VPS28-203ENST00000524521 TMEM183AQ8IXX5 376 aa14.58□□□□□ -0.08
VPS28-203ENST00000524521 C18orf15Q96N68 181 aa14.58□□□□□ -0.08
VPS28-203ENST00000524521 CYTL1Q9NRR1 136 aa14.58□□□□□ -0.08
VPS28-203ENST00000524521 MDFICQ9P1T7 246 aa14.58□□□□□ -0.08
VPS28-203ENST00000524521 NAGKQ9UJ70 344 aa14.58□□□□□ -0.08
VPS28-203ENST00000524521 CTXND1A0A1B0GTU2 59 aa14.57□□□□□ -0.08
VPS28-203ENST00000524521 SERTM2A0A1B0GWG4 89 aa14.57□□□□□ -0.08
VPS28-203ENST00000524521 F6UZH7 168 aa14.57□□□□□ -0.08
VPS28-203ENST00000524521 K7EQM0 130 aa14.57□□□□□ -0.08
VPS28-203ENST00000524521 TCRAP04437 139 aa14.57□□□□□ -0.08
VPS28-203ENST00000524521 EPDR1Q9UM22 224 aa14.57□□□□□ -0.08
VPS28-203ENST00000524521 TRAV21A0A0B4J279 112 aa14.56□□□□□ -0.08
VPS28-203ENST00000524521 Q6ZR54 194 aa14.56□□□□□ -0.08
VPS28-203ENST00000524521 NDFIP1Q9BT67 221 aa14.56□□□□□ -0.08
VPS28-203ENST00000524521 LINC00588Q9Y4M8 146 aa14.56□□□□□ -0.08
VPS28-203ENST00000524521 DNAH6Q9C0G6 4158 aa14.55□□□□□ -0.08
VPS28-203ENST00000524521 TRGV11A0A075B6L2 103 aa14.55□□□□□ -0.08
VPS28-203ENST00000524521 GGTLC3B5MD39 225 aa14.55□□□□□ -0.08
VPS28-203ENST00000524521 H3BNG1 76 aa14.55□□□□□ -0.08
VPS28-203ENST00000524521 IGHV3-53P01767 116 aa14.55□□□□□ -0.08
VPS28-203ENST00000524521 LINC00336Q6ZUF6 198 aa14.55□□□□□ -0.08
VPS28-203ENST00000524521 PSG8Q9UQ74 426 aa14.55□□□□□ -0.08
VPS28-203ENST00000524521 BIRC6Q9NR09 4857 aa14.55□□□□□ -0.08
VPS28-203ENST00000524521 A0A1W2PRE2 83 aa14.54□□□□□ -0.08
VPS28-203ENST00000524521 GNRH2O43555 120 aa14.54□□□□□ -0.08
VPS28-203ENST00000524521 FGF8P55075 233 aaPredicted RBP14.54□□□□□ -0.08
VPS28-203ENST00000524521 KCNRGQ8N5I3 272 aa14.54□□□□□ -0.08
VPS28-203ENST00000524521 ZNRF2Q8NHG8 242 aa14.54□□□□□ -0.08
VPS28-203ENST00000524521 SPXQ9BT56 116 aa14.54□□□□□ -0.08
VPS28-203ENST00000524521 DNAH10Q8IVF4 4471 aa14.53□□□□□ -0.08
VPS28-203ENST00000524521 RTL8CO15255 209 aa14.53□□□□□ -0.08
VPS28-203ENST00000524521 UBE2G2P60604 165 aa14.53□□□□□ -0.08
VPS28-203ENST00000524521 TDRG1Q3Y452 100 aa14.53□□□□□ -0.08
VPS28-203ENST00000524521 OR11H4Q8NGC9 324 aa14.53□□□□□ -0.08
VPS28-203ENST00000524521 VSIG2Q96IQ7 327 aa14.53□□□□□ -0.08
VPS28-203ENST00000524521 C8orf49Q96NF6 230 aa14.53□□□□□ -0.08
VPS28-203ENST00000524521 FRAS1Q86XX4 4008 aa14.52□□□□□ -0.08
VPS28-203ENST00000524521 MUC4Q99102 2169 aa14.52□□□□□ -0.08
VPS28-203ENST00000524521 IFNA7P01567 189 aa14.52□□□□□ -0.09
VPS28-203ENST00000524521 FLI1Q01543 452 aaPredicted RBP14.52□□□□□ -0.09
VPS28-203ENST00000524521 PRNTQ86SH4 94 aa14.52□□□□□ -0.09
VPS28-203ENST00000524521 CYB561D1Q8N8Q1 229 aa14.52□□□□□ -0.09
VPS28-203ENST00000524521 HMSDA8MTL9 139 aa14.51□□□□□ -0.09
VPS28-203ENST00000524521 IGLV2-11P01706 119 aa14.51□□□□□ -0.09
VPS28-203ENST00000524521 ZNF345Q14585 488 aa14.51□□□□□ -0.09
VPS28-203ENST00000524521 KCNS1Q96KK3 526 aa14.51□□□□□ -0.09
VPS28-203ENST00000524521 PRSS29PA6NIE9 313 aa14.5□□□□□ -0.09
VPS28-203ENST00000524521 PAX4O43316 350 aa14.5□□□□□ -0.09
VPS28-203ENST00000524521 ZNF80P51504 273 aaPredicted RBP14.5□□□□□ -0.09
VPS28-203ENST00000524521 ESRGQ1W209 222 aa14.5□□□□□ -0.09
VPS28-203ENST00000524521 TMEM75Q8N9X5 138 aa14.5□□□□□ -0.09
VPS28-203ENST00000524521 SDF2L1Q9HCN8 221 aa14.5□□□□□ -0.09
VPS28-203ENST00000524521 A0A096LPF7 62 aa14.49□□□□□ -0.09
VPS28-203ENST00000524521 IGHV3-16A0A0C4DH30 117 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms