RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 PHRF1Q9P1Y6 1649 aaKnown RBP2.03□□□□□ -2.08
NUP54-215ENST00000514313 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.03□□□□□ -2.08
NUP54-215ENST00000514313 HSD17B12Q53GQ0 312 aa2.03□□□□□ -2.08
NUP54-215ENST00000514313 IZUMO2Q6UXV1 221 aa2.03□□□□□ -2.08
NUP54-215ENST00000514313 OR10AC1Q8NH08 325 aa2.03□□□□□ -2.08
NUP54-215ENST00000514313 FGD6Q6ZV73 1430 aa2.02□□□□□ -2.09
NUP54-215ENST00000514313 DBIP07108 87 aaKnown RBP2.02□□□□□ -2.09
NUP54-215ENST00000514313 ETV6P41212 452 aa2.02□□□□□ -2.09
NUP54-215ENST00000514313 GTF2A1P52655 376 aaPredicted RBP2.02□□□□□ -2.09
NUP54-215ENST00000514313 OCIAD2Q56VL3 154 aa2.02□□□□□ -2.09
NUP54-215ENST00000514313 PEAK1Q9H792 1746 aa2.02□□□□□ -2.09
NUP54-215ENST00000514313 OR2H2O95918 312 aa2.01□□□□□ -2.09
NUP54-215ENST00000514313 DNAJB13P59910 316 aa2.01□□□□□ -2.09
NUP54-215ENST00000514313 EML5Q05BV3 1969 aa2□□□□□ -2.09
NUP54-215ENST00000514313 BBIP1A8MTZ0 92 aa2□□□□□ -2.09
NUP54-215ENST00000514313 EDF1O60869 148 aaKnown RBP2□□□□□ -2.09
NUP54-215ENST00000514313 CKS2P33552 79 aa2□□□□□ -2.09
NUP54-215ENST00000514313 FXYD4P59646 89 aa2□□□□□ -2.09
NUP54-215ENST00000514313 OTOSQ8NHW6 89 aa2□□□□□ -2.09
NUP54-215ENST00000514313 LPAR5Q9H1C0 372 aa2□□□□□ -2.09
NUP54-215ENST00000514313 CRCT1Q9UGL9 99 aa2□□□□□ -2.09
NUP54-215ENST00000514313 USP54Q70EL1 1684 aa1.99□□□□□ -2.09
NUP54-215ENST00000514313 ARHGEF10O15013 1369 aa1.99□□□□□ -2.09
NUP54-215ENST00000514313 PDE6GP18545 87 aa1.99□□□□□ -2.09
NUP54-215ENST00000514313 TCTEX1D1Q8N7M0 179 aa1.99□□□□□ -2.09
NUP54-215ENST00000514313 AP1S3Q96PC3 154 aa1.99□□□□□ -2.09
NUP54-215ENST00000514313 PTPRDP23468 1912 aa1.98□□□□□ -2.09
NUP54-215ENST00000514313 IFITM5A6NNB3 132 aa1.98□□□□□ -2.09
NUP54-215ENST00000514313 ZNF727A8MUV8 499 aa1.98□□□□□ -2.09
NUP54-215ENST00000514313 PCBD1P61457 104 aa1.98□□□□□ -2.09
NUP54-215ENST00000514313 CCSMST1Q4G0I0 132 aa1.98□□□□□ -2.09
NUP54-215ENST00000514313 Q8N6K4 173 aa1.98□□□□□ -2.09
NUP54-215ENST00000514313 SMIM7Q9BQ49 75 aa1.98□□□□□ -2.09
NUP54-215ENST00000514313 GSKIPQ9P0R6 139 aa1.98□□□□□ -2.09
NUP54-215ENST00000514313 BOKQ9UMX3 212 aaPredicted RBP1.98□□□□□ -2.09
NUP54-215ENST00000514313 MUC4Q99102 2169 aa1.98□□□□□ -2.09
NUP54-215ENST00000514313 IGHV1-24A0A0C4DH33 117 aa1.97□□□□□ -2.09
NUP54-215ENST00000514313 A0A1W2PPB8 328 aa1.97□□□□□ -2.09
NUP54-215ENST00000514313 A0A1W2PRS3 328 aa1.97□□□□□ -2.09
NUP54-215ENST00000514313 KIR3DP1A8MWS1 328 aa1.97□□□□□ -2.09
NUP54-215ENST00000514313 SULT1C4O75897 302 aa1.97□□□□□ -2.09
NUP54-215ENST00000514313 CSAG1Q6PB30 78 aa1.97□□□□□ -2.09
NUP54-215ENST00000514313 BANF2Q9H503 90 aa1.97□□□□□ -2.09
NUP54-215ENST00000514313 CDC42EP2O14613 210 aa1.96□□□□□ -2.1
NUP54-215ENST00000514313 HIST1H1BP16401 226 aaKnown RBP1.96□□□□□ -2.1
NUP54-215ENST00000514313 CKS1BP61024 79 aa1.96□□□□□ -2.1
NUP54-215ENST00000514313 QRFPP83859 136 aa1.96□□□□□ -2.1
NUP54-215ENST00000514313 MORN2Q502X0 79 aa1.96□□□□□ -2.1
NUP54-215ENST00000514313 TMEM91Q6ZNR0 172 aa1.96□□□□□ -2.1
NUP54-215ENST00000514313 KMT2BQ9UMN6 2715 aaPredicted RBP1.96□□□□□ -2.1
NUP54-215ENST00000514313 IGHV3-30P01768 117 aa1.95□□□□□ -2.1
NUP54-215ENST00000514313 IGHV3-30-5P0DP03 117 aa1.95□□□□□ -2.1
NUP54-215ENST00000514313 SNRPD3P62318 126 aaKnown RBP1.95□□□□□ -2.1
NUP54-215ENST00000514313 ASB16-AS1Q495Z4 193 aa1.95□□□□□ -2.1
NUP54-215ENST00000514313 C3orf62Q6ZUJ4 267 aa1.95□□□□□ -2.1
NUP54-215ENST00000514313 OR4S1Q8NGB4 309 aa1.95□□□□□ -2.1
NUP54-215ENST00000514313 MAFIPQ8WZ33 124 aa1.95□□□□□ -2.1
NUP54-215ENST00000514313 METTL1Q9UBP6 276 aaKnown RBP1.95□□□□□ -2.1
NUP54-215ENST00000514313 SMIM24O75264 130 aa1.94□□□□□ -2.1
NUP54-215ENST00000514313 C10orf111Q8N326 155 aa1.94□□□□□ -2.1
NUP54-215ENST00000514313 FANCMQ8IYD8 2048 aa1.93□□□□□ -2.1
NUP54-215ENST00000514313 LZICQ8WZA0 190 aa1.93□□□□□ -2.1
NUP54-215ENST00000514313 COMMD3Q9UBI1 195 aa1.93□□□□□ -2.1
NUP54-215ENST00000514313 DNAJC15Q9Y5T4 150 aa1.93□□□□□ -2.1
NUP54-215ENST00000514313 MED12Q93074 2177 aa1.93□□□□□ -2.1
NUP54-215ENST00000514313 CITO14578 2027 aa1.92□□□□□ -2.1
NUP54-215ENST00000514313 CD3DP04234 171 aa1.92□□□□□ -2.1
NUP54-215ENST00000514313 HLA-DRB4P13762 266 aa1.92□□□□□ -2.1
NUP54-215ENST00000514313 AKR1D1P51857 326 aa1.92□□□□□ -2.1
NUP54-215ENST00000514313 OR8J3Q8NGG0 315 aa1.92□□□□□ -2.1
NUP54-215ENST00000514313 HLA-DRB4X5D2U9 266 aa1.92□□□□□ -2.1
NUP54-215ENST00000514313 KIAA1549LQ6ZVL6 1849 aa1.91□□□□□ -2.1
NUP54-215ENST00000514313 PNMA8CA0A1B0GUJ8 204 aa1.91□□□□□ -2.1
NUP54-215ENST00000514313 A6NN06 94 aa1.91□□□□□ -2.1
NUP54-215ENST00000514313 GYPBP06028 91 aa1.91□□□□□ -2.1
NUP54-215ENST00000514313 RPL37AP61513 92 aaKnown RBP1.91□□□□□ -2.1
NUP54-215ENST00000514313 LINC00575Q6W349 94 aa1.91□□□□□ -2.1
NUP54-215ENST00000514313 MAGOHBQ96A72 148 aaKnown RBP1.91□□□□□ -2.1
NUP54-215ENST00000514313 ZGRF1Q86YA3 2104 aa1.91□□□□□ -2.1
NUP54-215ENST00000514313 MYH1P12882 1939 aa1.91□□□□□ -2.1
NUP54-215ENST00000514313 ARHGAP31Q2M1Z3 1444 aa1.91□□□□□ -2.1
NUP54-215ENST00000514313 HIST1H1AQ02539 215 aaPredicted RBP1.9□□□□□ -2.11
NUP54-215ENST00000514313 IDO2Q6ZQW0 420 aa1.89□□□□□ -2.11
NUP54-215ENST00000514313 ASCC3Q8N3C0 2202 aaKnown RBP1.89□□□□□ -2.11
NUP54-215ENST00000514313 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.88□□□□□ -2.11
NUP54-215ENST00000514313 ANK1P16157 1881 aa1.88□□□□□ -2.11
NUP54-215ENST00000514313 KDELR1P24390 212 aa1.88□□□□□ -2.11
NUP54-215ENST00000514313 RHOHQ15669 191 aa1.88□□□□□ -2.11
NUP54-215ENST00000514313 MRPL36Q9P0J6 103 aaKnown RBP1.88□□□□□ -2.11
NUP54-215ENST00000514313 LAMA4Q16363 1823 aa1.87□□□□□ -2.11
NUP54-215ENST00000514313 TMEM30CPA0ZSE6 113 aa1.87□□□□□ -2.11
NUP54-215ENST00000514313 NUPR2A6NF83 97 aa1.87□□□□□ -2.11
NUP54-215ENST00000514313 FHAD1B1AJZ9 1412 aa1.87□□□□□ -2.11
NUP54-215ENST00000514313 IGKCP01834 107 aa1.87□□□□□ -2.11
NUP54-215ENST00000514313 SLC35B3Q9H1N7 401 aa1.87□□□□□ -2.11
NUP54-215ENST00000514313 NINQ8N4C6 2090 aa1.86□□□□□ -2.11
NUP54-215ENST00000514313 IL7P13232 177 aa1.86□□□□□ -2.11
NUP54-215ENST00000514313 LYPD5Q6UWN5 251 aa1.86□□□□□ -2.11
NUP54-215ENST00000514313 ADCYAP1P18509 176 aa1.85□□□□□ -2.11
NUP54-215ENST00000514313 PLGLB1Q02325 96 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms