RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 ZNF256Q9Y2P7 627 aaPredicted RBP3.31□□□□□ -1.88
VPS50-210ENST00000471188 TRGV11A0A075B6L2 103 aa3.31□□□□□ -1.88
VPS50-210ENST00000471188 ZNF785A8K8V0 405 aa3.31□□□□□ -1.88
VPS50-210ENST00000471188 H3BMM0 161 aa3.31□□□□□ -1.88
VPS50-210ENST00000471188 ENSAO43768 121 aaKnown RBP3.31□□□□□ -1.88
VPS50-210ENST00000471188 FSTL3O95633 263 aa3.31□□□□□ -1.88
VPS50-210ENST00000471188 UBE2D1P51668 147 aa3.31□□□□□ -1.88
VPS50-210ENST00000471188 TCF15Q12870 199 aa3.31□□□□□ -1.88
VPS50-210ENST00000471188 LAGE3Q14657 143 aa3.31□□□□□ -1.88
VPS50-210ENST00000471188 Q6ZS52 159 aa3.31□□□□□ -1.88
VPS50-210ENST00000471188 ZCCHC24Q8N2G6 241 aaKnown RBP3.31□□□□□ -1.88
VPS50-210ENST00000471188 C1orf162Q8NEQ5 155 aaPredicted RBP3.31□□□□□ -1.88
VPS50-210ENST00000471188 UBE2WQ96B02 151 aa3.31□□□□□ -1.88
VPS50-210ENST00000471188 ODF3Q96PU9 254 aa3.31□□□□□ -1.88
VPS50-210ENST00000471188 SCGB3A1Q96QR1 104 aa3.31□□□□□ -1.88
VPS50-210ENST00000471188 LINC01587Q99440 93 aa3.31□□□□□ -1.88
VPS50-210ENST00000471188 NDUFA4L2Q9NRX3 87 aa3.31□□□□□ -1.88
VPS50-210ENST00000471188 MDFICQ9P1T7 246 aa3.31□□□□□ -1.88
VPS50-210ENST00000471188 PRO1854Q9UHT4 67 aa3.31□□□□□ -1.88
VPS50-210ENST00000471188 CHD9Q3L8U1 2897 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 DCHS1Q96JQ0 3298 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 TRAV26-2A0A0B4J265 109 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 LYZL6O75951 148 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 DUSP14O95147 198 aaKnown RBP3.3□□□□□ -1.88
VPS50-210ENST00000471188 PLGLAQ15195 96 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 FAM201AQ5SY85 155 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 RUSC1-AS1Q66K80 236 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 ZNF474Q6S9Z5 364 aaPredicted RBP3.3□□□□□ -1.88
VPS50-210ENST00000471188 PIP4P1Q86T03 277 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 C11orf53Q8IXP5 236 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 Q8TAT8 98 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 TMEM101Q96IK0 257 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 DUX3Q96PT4 197 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 MED13Q9UHV7 2174 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 IGKV2-40A0A087WW87 121 aaPredicted RBP3.3□□□□□ -1.88
VPS50-210ENST00000471188 F5H768 121 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 K7ESF4 209 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 OVOL3O00110 214 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 TIMM23O14925 209 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 MRPS12O15235 138 aaKnown RBP3.3□□□□□ -1.88
VPS50-210ENST00000471188 NDUFA7O95182 113 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 IGKV2D-40P01614 121 aaPredicted RBP3.3□□□□□ -1.88
VPS50-210ENST00000471188 IGLC6P0CF74 106 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 EGR2P11161 476 aaPredicted RBP3.3□□□□□ -1.88
VPS50-210ENST00000471188 SPINK14Q6IE38 97 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 C2orf82Q6UX34 121 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 Q8N8P6 123 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 OR4C13Q8NGP0 309 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 SCNM1Q9BWG6 230 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 MRPL20Q9BYC9 149 aaKnown RBP3.3□□□□□ -1.88
VPS50-210ENST00000471188 CTSZQ9UBR2 303 aa3.3□□□□□ -1.88
VPS50-210ENST00000471188 TNRC6BQ9UPQ9 1833 aaKnown RBP3.3□□□□□ -1.88
VPS50-210ENST00000471188 IGKV1D-17A0A075B6S4 117 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 IGHV1-45A0A0A0MS14 117 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 IQCF6A8MYZ5 107 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 CD3EP07766 207 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 CFC1BP0CG36 223 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 CFC1P0CG37 223 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 CD40P25942 277 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 CXCL12P48061 93 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 POU2AF1Q16633 256 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 THAP8Q8NA92 274 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 DEFB104AQ8WTQ1 72 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 IGHV3-72A0A0B4J1Y9 119 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 RBAKDNA6NC62 111 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 PINLYPA6NC86 204 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 CFIP05156 583 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 RNASE1P07998 156 aaKnown RBP3.29□□□□□ -1.88
VPS50-210ENST00000471188 CECR9P0C854 216 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 COX6A1P12074 109 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 HLA-DMBP28068 263 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 RPL13AP40429 203 aaKnown RBP3.29□□□□□ -1.88
VPS50-210ENST00000471188 NXPH1P58417 271 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 ATXN8Q156A1 80 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 LINC01620Q4KN68 170 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 GAGE2AQ6NT46 116 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 DTX2Q86UW9 622 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 C17orf82Q86X59 251 aaPredicted RBP3.29□□□□□ -1.88
VPS50-210ENST00000471188 SBSPONQ8IVN8 264 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 TDHQ8IZJ6 230 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 CFAP47Q6ZTR5 3102 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 ARHGAP32A7KAX9 2087 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 TRBV19A0A075B6N1 114 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 IGKV3D-15A0A087WSY6 115 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 CDX4O14627 284 aaPredicted RBP3.29□□□□□ -1.88
VPS50-210ENST00000471188 SPRNQ5BIV9 151 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 TMEM170BQ5T4T1 132 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 C6orf15Q6UXA7 325 aaPredicted RBP3.29□□□□□ -1.88
VPS50-210ENST00000471188 C3orf22Q8N5N4 141 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 RNF185Q96GF1 192 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 IMMP1LQ96LU5 166 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 PRR25Q96S07 402 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 LINC00527Q9UJ94 153 aa3.29□□□□□ -1.88
VPS50-210ENST00000471188 DSPP15924 2871 aaKnown RBP3.28□□□□□ -1.88
VPS50-210ENST00000471188 A0A1W2PR77 199 aa3.28□□□□□ -1.88
VPS50-210ENST00000471188 LINC01619G3V211 115 aa3.28□□□□□ -1.88
VPS50-210ENST00000471188 LGALS9O00182 355 aa3.28□□□□□ -1.88
VPS50-210ENST00000471188 C17orf58Q2M2W7 97 aa3.28□□□□□ -1.88
VPS50-210ENST00000471188 IGFL4Q6B9Z1 124 aa3.28□□□□□ -1.88
VPS50-210ENST00000471188 CEMP1Q6PRD7 247 aaPredicted RBP3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms