RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 CLEC3BP05452 202 aa11.02□□□□□ -0.65
LIG1-202ENST00000427526 FXYD7P58549 80 aa11.02□□□□□ -0.65
LIG1-202ENST00000427526 NPFFR1Q9GZQ6 430 aa11.02□□□□□ -0.65
LIG1-202ENST00000427526 CLPSL1A2RUU4 121 aa11.01□□□□□ -0.65
LIG1-202ENST00000427526 UBE2E1P51965 193 aa11.01□□□□□ -0.65
LIG1-202ENST00000427526 ERCC8Q13216 396 aa11.01□□□□□ -0.65
LIG1-202ENST00000427526 UTP20O75691 2785 aaKnown RBP11.01□□□□□ -0.65
LIG1-202ENST00000427526 CD5LO43866 347 aa11.01□□□□□ -0.65
LIG1-202ENST00000427526 CCL19Q99731 98 aa11.01□□□□□ -0.65
LIG1-202ENST00000427526 RBAKDNA6NC62 111 aa11.01□□□□□ -0.65
LIG1-202ENST00000427526 LINC01546A6NGU7 62 aa11.01□□□□□ -0.65
LIG1-202ENST00000427526 ATP6V0E1O15342 81 aa11.01□□□□□ -0.65
LIG1-202ENST00000427526 ORM1P02763 201 aa11.01□□□□□ -0.65
LIG1-202ENST00000427526 RAB9AP51151 201 aa11.01□□□□□ -0.65
LIG1-202ENST00000427526 AMMECR1LQ6DCA0 310 aa11.01□□□□□ -0.65
LIG1-202ENST00000427526 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.01□□□□□ -0.65
LIG1-202ENST00000427526 OR1N2Q8NGR9 330 aa11.01□□□□□ -0.65
LIG1-202ENST00000427526 MYO18BQ8IUG5 2567 aa11□□□□□ -0.65
LIG1-202ENST00000427526 VPS13CQ709C8 3753 aa11□□□□□ -0.65
LIG1-202ENST00000427526 LINC01559Q495D7 138 aa11□□□□□ -0.65
LIG1-202ENST00000427526 SNAI2O43623 268 aa11□□□□□ -0.65
LIG1-202ENST00000427526 CACNG7P62955 275 aa11□□□□□ -0.65
LIG1-202ENST00000427526 ECSCRQ19T08 205 aa11□□□□□ -0.65
LIG1-202ENST00000427526 CCDC140Q96MF4 163 aa11□□□□□ -0.65
LIG1-202ENST00000427526 RNF182Q8N6D2 247 aa10.99□□□□□ -0.65
LIG1-202ENST00000427526 IFI27L1Q96BM0 104 aa10.99□□□□□ -0.65
LIG1-202ENST00000427526 GAS8-AS1O95177 125 aa10.99□□□□□ -0.65
LIG1-202ENST00000427526 ZNF462Q96JM2 2506 aa10.98□□□□□ -0.65
LIG1-202ENST00000427526 IGHV4-61A0A0C4DH41 118 aa10.98□□□□□ -0.65
LIG1-202ENST00000427526 LINC01548A6NM66 108 aa10.98□□□□□ -0.65
LIG1-202ENST00000427526 SAA4P35542 130 aa10.98□□□□□ -0.65
LIG1-202ENST00000427526 CRYBA4P53673 196 aa10.98□□□□□ -0.65
LIG1-202ENST00000427526 BOD1L2Q8IYS8 172 aa10.98□□□□□ -0.65
LIG1-202ENST00000427526 ATP6V0BQ99437 205 aa10.98□□□□□ -0.65
LIG1-202ENST00000427526 TRAV26-1A0A087WT03 109 aa10.98□□□□□ -0.65
LIG1-202ENST00000427526 IL17RELQ6ZVW7 336 aa10.98□□□□□ -0.65
LIG1-202ENST00000427526 NRGNQ92686 78 aa10.98□□□□□ -0.65
LIG1-202ENST00000427526 SLC50A1Q9BRV3 221 aa10.98□□□□□ -0.65
LIG1-202ENST00000427526 MAP1AP78559 2803 aaPredicted RBP10.98□□□□□ -0.65
LIG1-202ENST00000427526 G3V318 75 aa10.98□□□□□ -0.65
LIG1-202ENST00000427526 CRYBG3Q68DQ2 2970 aa10.98□□□□□ -0.65
LIG1-202ENST00000427526 IGHV3OR16-10A0A075B7F0 116 aa10.97□□□□□ -0.65
LIG1-202ENST00000427526 SCGB1A1P11684 91 aa10.97□□□□□ -0.65
LIG1-202ENST00000427526 TMEM97Q5BJF2 176 aa10.97□□□□□ -0.65
LIG1-202ENST00000427526 CLEC19AQ6UXS0 136 aa10.97□□□□□ -0.65
LIG1-202ENST00000427526 AGPAT4-IT1Q9H0P7 198 aa10.97□□□□□ -0.65
LIG1-202ENST00000427526 IGKV3D-20A0A0C4DH25 116 aa10.97□□□□□ -0.65
LIG1-202ENST00000427526 IGHV3-66A0A0C4DH42 116 aa10.97□□□□□ -0.65
LIG1-202ENST00000427526 MAP1LC3AQ9H492 121 aa10.97□□□□□ -0.65
LIG1-202ENST00000427526 TRAV8-2A0A0B4J237 113 aa10.96□□□□□ -0.65
LIG1-202ENST00000427526 CENPVL3A0A0U1RRI6 287 aa10.96□□□□□ -0.65
LIG1-202ENST00000427526 ATP5J2P56134 94 aa10.96□□□□□ -0.65
LIG1-202ENST00000427526 C11orf21Q9P2W6 132 aa10.96□□□□□ -0.65
LIG1-202ENST00000427526 TNFRSF6BO95407 300 aa10.95□□□□□ -0.66
LIG1-202ENST00000427526 SEC11AP67812 179 aa10.95□□□□□ -0.66
LIG1-202ENST00000427526 C10orf105Q8TEF2 133 aa10.95□□□□□ -0.66
LIG1-202ENST00000427526 PIMREGQ9BSJ6 248 aa10.95□□□□□ -0.66
LIG1-202ENST00000427526 ZFHX3Q15911 3703 aa10.95□□□□□ -0.66
LIG1-202ENST00000427526 PPIFP30405 207 aaKnown RBP10.95□□□□□ -0.66
LIG1-202ENST00000427526 U3KQE9 123 aa10.95□□□□□ -0.66
LIG1-202ENST00000427526 IGHV4-30-2A0A087WSY4 118 aa10.95□□□□□ -0.66
LIG1-202ENST00000427526 TRBV7-1A0A0A6YYK4 115 aa10.95□□□□□ -0.66
LIG1-202ENST00000427526 SMAD7O15105 426 aaKnown RBP10.95□□□□□ -0.66
LIG1-202ENST00000427526 NPFFO15130 113 aa10.95□□□□□ -0.66
LIG1-202ENST00000427526 EEF1AKMT3Q96AZ1 226 aa10.95□□□□□ -0.66
LIG1-202ENST00000427526 DKK2Q9UBU2 259 aa10.95□□□□□ -0.66
LIG1-202ENST00000427526 IGHV3OR16-13A0A075B7E8 117 aa10.94□□□□□ -0.66
LIG1-202ENST00000427526 IGHV3-74A0A0B4J1X5 117 aa10.94□□□□□ -0.66
LIG1-202ENST00000427526 TRAV8-6A0A0B4J262 113 aa10.94□□□□□ -0.66
LIG1-202ENST00000427526 SIVA1O15304 175 aa10.94□□□□□ -0.66
LIG1-202ENST00000427526 FCER1GP30273 86 aa10.94□□□□□ -0.66
LIG1-202ENST00000427526 MRPL53Q96EL3 112 aaKnown RBP10.94□□□□□ -0.66
LIG1-202ENST00000427526 NXT2Q9NPJ8 142 aaKnown RBP10.94□□□□□ -0.66
LIG1-202ENST00000427526 CELSR1Q9NYQ6 3014 aa10.94□□□□□ -0.66
LIG1-202ENST00000427526 ABCA2Q9BZC7 2435 aa10.94□□□□□ -0.66
LIG1-202ENST00000427526 C7orf71A4D174 169 aa10.94□□□□□ -0.66
LIG1-202ENST00000427526 AZU1P20160 251 aa10.94□□□□□ -0.66
LIG1-202ENST00000427526 WFDC3Q8IUB2 231 aa10.94□□□□□ -0.66
LIG1-202ENST00000427526 C5orf56Q8N8D9 126 aa10.94□□□□□ -0.66
LIG1-202ENST00000427526 ZMAT4Q9H898 229 aa10.94□□□□□ -0.66
LIG1-202ENST00000427526 GATA1P15976 413 aaPredicted RBP10.93□□□□□ -0.66
LIG1-202ENST00000427526 LEPP41159 167 aa10.93□□□□□ -0.66
LIG1-202ENST00000427526 ADAMTSL5Q6ZMM2 481 aa10.93□□□□□ -0.66
LIG1-202ENST00000427526 ZNF843Q8N446 348 aa10.93□□□□□ -0.66
LIG1-202ENST00000427526 OR9G4Q8NGQ1 327 aa10.93□□□□□ -0.66
LIG1-202ENST00000427526 PIFOQ8TCI5 191 aa10.93□□□□□ -0.66
LIG1-202ENST00000427526 PEF1Q9UBV8 284 aaKnown RBP10.93□□□□□ -0.66
LIG1-202ENST00000427526 SHISA2Q6UWI4 295 aa10.93□□□□□ -0.66
LIG1-202ENST00000427526 C8orf86Q6ZUL3 223 aa10.93□□□□□ -0.66
LIG1-202ENST00000427526 METTL26Q96S19 204 aa10.93□□□□□ -0.66
LIG1-202ENST00000427526 EPG5Q9HCE0 2579 aa10.93□□□□□ -0.66
LIG1-202ENST00000427526 CELSR2Q9HCU4 2923 aa10.93□□□□□ -0.66
LIG1-202ENST00000427526 IGLV2-18A0A075B6J9 118 aa10.93□□□□□ -0.66
LIG1-202ENST00000427526 IGHV7-4-1A0A0J9YVY3 117 aa10.93□□□□□ -0.66
LIG1-202ENST00000427526 EVI2AP22794 236 aa10.93□□□□□ -0.66
LIG1-202ENST00000427526 C9orf47Q6ZRZ4 202 aa10.93□□□□□ -0.66
LIG1-202ENST00000427526 ZNF479Q96JC4 524 aa10.93□□□□□ -0.66
LIG1-202ENST00000427526 C18orf15Q96N68 181 aa10.93□□□□□ -0.66
LIG1-202ENST00000427526 HIF1ANQ9NWT6 349 aa10.93□□□□□ -0.66
LIG1-202ENST00000427526 FAM208BQ5VWN6 2430 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms