RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 MINOS1Q5TGZ0 78 aa10.34□□□□□ -0.75
VPS54-203ENST00000409558 RASL11AQ6T310 242 aa10.34□□□□□ -0.75
VPS54-203ENST00000409558 OR10AG1Q8NH19 301 aa10.34□□□□□ -0.75
VPS54-203ENST00000409558 MINOS1-NBL1R4GNA1 71 aa10.34□□□□□ -0.75
VPS54-203ENST00000409558 HIST1H1AQ02539 215 aaPredicted RBP10.33□□□□□ -0.76
VPS54-203ENST00000409558 SPANXN1Q5VSR9 72 aa10.33□□□□□ -0.76
VPS54-203ENST00000409558 ZNF502Q8TBZ5 544 aa10.33□□□□□ -0.76
VPS54-203ENST00000409558 EEF1AKMT3Q96AZ1 226 aa10.33□□□□□ -0.76
VPS54-203ENST00000409558 BUB3O43684 328 aa10.33□□□□□ -0.76
VPS54-203ENST00000409558 S100A4P26447 101 aaKnown RBP10.33□□□□□ -0.76
VPS54-203ENST00000409558 CLEC2AQ6UVW9 174 aa10.33□□□□□ -0.76
VPS54-203ENST00000409558 K7EMI3 77 aa10.33□□□□□ -0.76
VPS54-203ENST00000409558 PRSS1P07477 247 aa10.33□□□□□ -0.76
VPS54-203ENST00000409558 KLF5Q13887 457 aaPredicted RBP10.33□□□□□ -0.76
VPS54-203ENST00000409558 ORMDL3Q8N138 153 aa10.33□□□□□ -0.76
VPS54-203ENST00000409558 USP24Q9UPU5 2620 aa10.32□□□□□ -0.76
VPS54-203ENST00000409558 SMAD7O15105 426 aaKnown RBP10.32□□□□□ -0.76
VPS54-203ENST00000409558 IGHG4P01861 327 aa10.32□□□□□ -0.76
VPS54-203ENST00000409558 PAX8Q06710 450 aa10.32□□□□□ -0.76
VPS54-203ENST00000409558 LBHQ53QV2 105 aaPredicted RBP10.32□□□□□ -0.76
VPS54-203ENST00000409558 C8orf86Q6ZUL3 223 aa10.32□□□□□ -0.76
VPS54-203ENST00000409558 PTTG1IPP53801 180 aa10.32□□□□□ -0.76
VPS54-203ENST00000409558 FABP5P3A8MUU1 101 aa10.32□□□□□ -0.76
VPS54-203ENST00000409558 SAPCD1Q5SSQ6 148 aa10.32□□□□□ -0.76
VPS54-203ENST00000409558 Q8N6K4 173 aa10.32□□□□□ -0.76
VPS54-203ENST00000409558 FAM110DQ8TAY7 271 aaPredicted RBP10.32□□□□□ -0.76
VPS54-203ENST00000409558 NPIPB6E9PJ23 425 aa10.31□□□□□ -0.76
VPS54-203ENST00000409558 ZNF124Q15973 351 aa10.31□□□□□ -0.76
VPS54-203ENST00000409558 CT83Q5H943 113 aa10.31□□□□□ -0.76
VPS54-203ENST00000409558 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.31□□□□□ -0.76
VPS54-203ENST00000409558 C11orf21Q9P2W6 132 aa10.31□□□□□ -0.76
VPS54-203ENST00000409558 HSPB8Q9UJY1 196 aa10.31□□□□□ -0.76
VPS54-203ENST00000409558 MGPP08493 103 aa10.31□□□□□ -0.76
VPS54-203ENST00000409558 RAB37Q96AX2 223 aa10.31□□□□□ -0.76
VPS54-203ENST00000409558 OVOL3O00110 214 aa10.31□□□□□ -0.76
VPS54-203ENST00000409558 FAM104BQ5XKR9 115 aa10.31□□□□□ -0.76
VPS54-203ENST00000409558 GFRA4Q9GZZ7 299 aa10.31□□□□□ -0.76
VPS54-203ENST00000409558 MXRA5Q9NR99 2828 aa10.3□□□□□ -0.76
VPS54-203ENST00000409558 DLEU1O43261 78 aa10.3□□□□□ -0.76
VPS54-203ENST00000409558 AVPP01185 164 aa10.3□□□□□ -0.76
VPS54-203ENST00000409558 C5orf56Q8N8D9 126 aa10.3□□□□□ -0.76
VPS54-203ENST00000409558 BMI1P35226 326 aa10.3□□□□□ -0.76
VPS54-203ENST00000409558 C21orf62-AS1Q17RA5 79 aa10.3□□□□□ -0.76
VPS54-203ENST00000409558 KHDC1LQ5JSQ8 128 aa10.3□□□□□ -0.76
VPS54-203ENST00000409558 SLC25A34Q6PIV7 304 aa10.3□□□□□ -0.76
VPS54-203ENST00000409558 PIMREGQ9BSJ6 248 aa10.3□□□□□ -0.76
VPS54-203ENST00000409558 C7orf71A4D174 169 aa10.3□□□□□ -0.76
VPS54-203ENST00000409558 M0QZK8 103 aa10.3□□□□□ -0.76
VPS54-203ENST00000409558 RNASE4P34096 147 aaKnown RBP10.3□□□□□ -0.76
VPS54-203ENST00000409558 AJUBAQ96IF1 538 aa10.3□□□□□ -0.76
VPS54-203ENST00000409558 DKK2Q9UBU2 259 aa10.3□□□□□ -0.76
VPS54-203ENST00000409558 LYPD1Q8N2G4 141 aa10.29□□□□□ -0.76
VPS54-203ENST00000409558 SRSF8Q9BRL6 282 aaKnown RBP10.29□□□□□ -0.76
VPS54-203ENST00000409558 LEPP41159 167 aa10.29□□□□□ -0.76
VPS54-203ENST00000409558 IGHV1-69DA0A0B4J2H0 117 aa10.29□□□□□ -0.76
VPS54-203ENST00000409558 IGHV1-69P01742 117 aa10.29□□□□□ -0.76
VPS54-203ENST00000409558 NEGR1Q7Z3B1 354 aa10.29□□□□□ -0.76
VPS54-203ENST00000409558 CHCHD1Q96BP2 118 aaKnown RBP10.29□□□□□ -0.76
VPS54-203ENST00000409558 CLPSL1A2RUU4 121 aa10.29□□□□□ -0.76
VPS54-203ENST00000409558 PAX2Q02962 417 aa10.29□□□□□ -0.76
VPS54-203ENST00000409558 SMIM12Q96EX1 92 aa10.29□□□□□ -0.76
VPS54-203ENST00000409558 ZFAND3Q9H8U3 227 aa10.29□□□□□ -0.76
VPS54-203ENST00000409558 TGFAP01135 160 aa10.28□□□□□ -0.76
VPS54-203ENST00000409558 PDE6HQ13956 83 aa10.28□□□□□ -0.76
VPS54-203ENST00000409558 ANKRD39Q53RE8 183 aa10.28□□□□□ -0.76
VPS54-203ENST00000409558 ZNF747Q9BV97 191 aa10.28□□□□□ -0.76
VPS54-203ENST00000409558 MOB4Q9Y3A3 225 aa10.28□□□□□ -0.76
VPS54-203ENST00000409558 IGKV3D-20A0A0C4DH25 116 aa10.28□□□□□ -0.76
VPS54-203ENST00000409558 C11orf44Q8N8P7 122 aa10.28□□□□□ -0.76
VPS54-203ENST00000409558 RNF151Q2KHN1 245 aa10.27□□□□□ -0.76
VPS54-203ENST00000409558 C20orf173Q96LM9 149 aa10.27□□□□□ -0.76
VPS54-203ENST00000409558 PRR9Q5T870 116 aa10.27□□□□□ -0.77
VPS54-203ENST00000409558 OR4X2Q8NGF9 303 aa10.27□□□□□ -0.77
VPS54-203ENST00000409558 FBLL1A6NHQ2 334 aaKnown RBP10.26□□□□□ -0.77
VPS54-203ENST00000409558 IGHV4-59P01825 116 aa10.26□□□□□ -0.77
VPS54-203ENST00000409558 C1orf122Q6ZSJ8 110 aa10.26□□□□□ -0.77
VPS54-203ENST00000409558 C14orf178Q8N769 122 aaPredicted RBP10.26□□□□□ -0.77
VPS54-203ENST00000409558 TMEM160Q9NX00 188 aa10.26□□□□□ -0.77
VPS54-203ENST00000409558 FN1P02751 2386 aaKnown RBP10.26□□□□□ -0.77
VPS54-203ENST00000409558 OOSP1A8MZH6 123 aa10.26□□□□□ -0.77
VPS54-203ENST00000409558 GNRH2O43555 120 aa10.26□□□□□ -0.77
VPS54-203ENST00000409558 FCER1GP30273 86 aa10.26□□□□□ -0.77
VPS54-203ENST00000409558 PCP2Q8IVA1 136 aa10.26□□□□□ -0.77
VPS54-203ENST00000409558 DUX3Q96PT4 197 aa10.26□□□□□ -0.77
VPS54-203ENST00000409558 HIVEP2P31629 2446 aa10.25□□□□□ -0.77
VPS54-203ENST00000409558 TRAV8-2A0A0B4J237 113 aa10.25□□□□□ -0.77
VPS54-203ENST00000409558 FAM74A4Q5TZK3 123 aa10.25□□□□□ -0.77
VPS54-203ENST00000409558 FOXC2Q99958 501 aa10.25□□□□□ -0.77
VPS54-203ENST00000409558 TNFRSF6BO95407 300 aa10.25□□□□□ -0.77
VPS54-203ENST00000409558 IFI27L1Q96BM0 104 aa10.25□□□□□ -0.77
VPS54-203ENST00000409558 PPP1R14DQ9NXH3 145 aa10.25□□□□□ -0.77
VPS54-203ENST00000409558 TRAV12-2A0A075B6T6 113 aa10.25□□□□□ -0.77
VPS54-203ENST00000409558 FAM231BA6NCW3 169 aa10.25□□□□□ -0.77
VPS54-203ENST00000409558 ZNF688P0C7X2 276 aa10.25□□□□□ -0.77
VPS54-203ENST00000409558 SMIM15Q7Z3B0 74 aa10.25□□□□□ -0.77
VPS54-203ENST00000409558 TMEM158Q8WZ71 300 aa10.25□□□□□ -0.77
VPS54-203ENST00000409558 MAP1LC3AQ9H492 121 aa10.25□□□□□ -0.77
VPS54-203ENST00000409558 CHD6Q8TD26 2715 aa10.25□□□□□ -0.77
VPS54-203ENST00000409558 EMP1P54849 157 aa10.24□□□□□ -0.77
VPS54-203ENST00000409558 EBI3Q14213 229 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 132.3 ms