RNA–Protein interactions for RNA: ENST00000399903.6

PTPRA-205, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5 BASIC

Gene PTPRA, Length 3,337 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-205ENST00000399903 TMEM238LA0A1B0GVL6 79 aa13.36□□□□□ -0.27
PTPRA-205ENST00000399903 LY6HO94772 140 aa13.36□□□□□ -0.27
PTPRA-205ENST00000399903 RRN3P1Q2M238 152 aa13.36□□□□□ -0.27
PTPRA-205ENST00000399903 DYNLRB1Q9NP97 96 aa13.36□□□□□ -0.27
PTPRA-205ENST00000399903 HRNRQ86YZ3 2850 aaPredicted RBP13.35□□□□□ -0.27
PTPRA-205ENST00000399903 C17orf100A8MU93 164 aa13.35□□□□□ -0.27
PTPRA-205ENST00000399903 CRYGCP07315 174 aa13.35□□□□□ -0.27
PTPRA-205ENST00000399903 HIGD1BQ9P298 99 aa13.35□□□□□ -0.27
PTPRA-205ENST00000399903 IGKV1-17P01599 117 aa13.35□□□□□ -0.27
PTPRA-205ENST00000399903 ZNF80P51504 273 aaPredicted RBP13.35□□□□□ -0.27
PTPRA-205ENST00000399903 SCGB1D4Q6XE38 83 aa13.35□□□□□ -0.27
PTPRA-205ENST00000399903 TM2D2Q9BX73 214 aa13.35□□□□□ -0.27
PTPRA-205ENST00000399903 SRSF9Q13242 221 aaKnown RBP eCLIP13.34□□□□□ -0.27
PTPRA-205ENST00000399903 CDSNQ15517 529 aa13.34□□□□□ -0.27
PTPRA-205ENST00000399903 RNF125Q96EQ8 232 aa13.34□□□□□ -0.27
PTPRA-205ENST00000399903 FOXI1Q12951 378 aa13.34□□□□□ -0.27
PTPRA-205ENST00000399903 K7ENP7 123 aa13.33□□□□□ -0.28
PTPRA-205ENST00000399903 HOXA3O43365 443 aaPredicted RBP13.33□□□□□ -0.28
PTPRA-205ENST00000399903 NDUFB3O43676 98 aa13.33□□□□□ -0.28
PTPRA-205ENST00000399903 ANAPC13Q9BS18 74 aa13.33□□□□□ -0.28
PTPRA-205ENST00000399903 LINC01549A6NIU2 74 aa13.33□□□□□ -0.28
PTPRA-205ENST00000399903 TCTEX1D4Q5JR98 221 aa13.33□□□□□ -0.28
PTPRA-205ENST00000399903 SHANK2-AS3Q9BTD1 123 aa13.33□□□□□ -0.28
PTPRA-205ENST00000399903 U3KQK5 164 aa13.33□□□□□ -0.28
PTPRA-205ENST00000399903 LINC01548A6NM66 108 aa13.33□□□□□ -0.28
PTPRA-205ENST00000399903 E7EQL1 145 aa13.33□□□□□ -0.28
PTPRA-205ENST00000399903 OR11H12B2RN74 326 aa13.32□□□□□ -0.28
PTPRA-205ENST00000399903 XGP55808 180 aa13.32□□□□□ -0.28
PTPRA-205ENST00000399903 PPP1R27Q86WC6 154 aa13.32□□□□□ -0.28
PTPRA-205ENST00000399903 OR11H1Q8NG94 326 aa13.32□□□□□ -0.28
PTPRA-205ENST00000399903 OR11H2Q8NH07 326 aa13.32□□□□□ -0.28
PTPRA-205ENST00000399903 GATA4P43694 442 aa13.32□□□□□ -0.28
PTPRA-205ENST00000399903 ZFP2Q6ZN57 461 aa13.32□□□□□ -0.28
PTPRA-205ENST00000399903 ZNF502Q8TBZ5 544 aa13.32□□□□□ -0.28
PTPRA-205ENST00000399903 SIGLEC9Q9Y336 463 aa13.32□□□□□ -0.28
PTPRA-205ENST00000399903 J3KRW8 73 aa13.31□□□□□ -0.28
PTPRA-205ENST00000399903 VKORC1Q9BQB6 163 aa13.31□□□□□ -0.28
PTPRA-205ENST00000399903 TMEM14CQ9P0S9 112 aa13.31□□□□□ -0.28
PTPRA-205ENST00000399903 IGHV3OR16-13A0A075B7E8 117 aa13.31□□□□□ -0.28
PTPRA-205ENST00000399903 IGHV3-74A0A0B4J1X5 117 aa13.31□□□□□ -0.28
PTPRA-205ENST00000399903 B5MCH6 92 aa13.31□□□□□ -0.28
PTPRA-205ENST00000399903 HLA-DRB4P13762 266 aa13.31□□□□□ -0.28
PTPRA-205ENST00000399903 PAX8Q06710 450 aa13.31□□□□□ -0.28
PTPRA-205ENST00000399903 ERCC8Q13216 396 aa13.31□□□□□ -0.28
PTPRA-205ENST00000399903 NFE4Q86UQ8 179 aa13.31□□□□□ -0.28
PTPRA-205ENST00000399903 HLA-DRB4X5D2U9 266 aa13.31□□□□□ -0.28
PTPRA-205ENST00000399903 ITPR1Q14643 2758 aa13.31□□□□□ -0.28
PTPRA-205ENST00000399903 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.31□□□□□ -0.28
PTPRA-205ENST00000399903 PRSS29PA6NIE9 313 aa13.31□□□□□ -0.28
PTPRA-205ENST00000399903 SPRY2O43597 315 aa13.31□□□□□ -0.28
PTPRA-205ENST00000399903 ZFYVE26Q68DK2 2539 aa13.3□□□□□ -0.28
PTPRA-205ENST00000399903 INS-IGF2F8WCM5 200 aa13.3□□□□□ -0.28
PTPRA-205ENST00000399903 NXT2Q9NPJ8 142 aaKnown RBP13.3□□□□□ -0.28
PTPRA-205ENST00000399903 ATP5LO75964 103 aa13.3□□□□□ -0.28
PTPRA-205ENST00000399903 C3orf36Q3SXR2 165 aa13.3□□□□□ -0.28
PTPRA-205ENST00000399903 PRR25Q96S07 402 aa13.3□□□□□ -0.28
PTPRA-205ENST00000399903 CTSZQ9UBR2 303 aa13.3□□□□□ -0.28
PTPRA-205ENST00000399903 SCGB1C2P0DMR2 95 aa13.29□□□□□ -0.28
PTPRA-205ENST00000399903 RNASE6Q93091 150 aaKnown RBP13.29□□□□□ -0.28
PTPRA-205ENST00000399903 MRGPRG-AS1Q2M3A8 158 aa13.29□□□□□ -0.28
PTPRA-205ENST00000399903 ZNF491Q8N8L2 437 aa13.29□□□□□ -0.28
PTPRA-205ENST00000399903 RNF185Q96GF1 192 aa13.29□□□□□ -0.28
PTPRA-205ENST00000399903 C1QTNF4Q9BXJ3 329 aa13.29□□□□□ -0.28
PTPRA-205ENST00000399903 IGHV3-66A0A0C4DH42 116 aa13.29□□□□□ -0.28
PTPRA-205ENST00000399903 TRGV3P03979 118 aa13.29□□□□□ -0.28
PTPRA-205ENST00000399903 Q6ZUT4 128 aa13.29□□□□□ -0.28
PTPRA-205ENST00000399903 DTX2Q86UW9 622 aa13.29□□□□□ -0.28
PTPRA-205ENST00000399903 KIR2DL4Q99706 377 aa13.29□□□□□ -0.28
PTPRA-205ENST00000399903 CDIP1Q9H305 208 aa13.29□□□□□ -0.28
PTPRA-205ENST00000399903 SHISA9B4DS77 424 aa13.28□□□□□ -0.28
PTPRA-205ENST00000399903 H3BRN7 92 aa13.28□□□□□ -0.28
PTPRA-205ENST00000399903 NUP37Q8NFH4 326 aa13.28□□□□□ -0.28
PTPRA-205ENST00000399903 PRO0461Q9UI25 63 aa13.28□□□□□ -0.28
PTPRA-205ENST00000399903 CACNA1AO00555 2505 aa13.28□□□□□ -0.28
PTPRA-205ENST00000399903 HOXB4P17483 251 aaPredicted RBP13.28□□□□□ -0.28
PTPRA-205ENST00000399903 EMP1P54849 157 aa13.28□□□□□ -0.28
PTPRA-205ENST00000399903 FHL3Q13643 280 aa13.28□□□□□ -0.28
PTPRA-205ENST00000399903 DLX4Q92988 240 aaPredicted RBP13.28□□□□□ -0.28
PTPRA-205ENST00000399903 VPS13CQ709C8 3753 aa13.28□□□□□ -0.28
PTPRA-205ENST00000399903 PKD1L2Q7Z442 2459 aa13.28□□□□□ -0.28
PTPRA-205ENST00000399903 TMEM178BH3BS89 294 aa13.28□□□□□ -0.28
PTPRA-205ENST00000399903 H7C2G1 150 aa13.28□□□□□ -0.28
PTPRA-205ENST00000399903 CCL21O00585 134 aa13.28□□□□□ -0.28
PTPRA-205ENST00000399903 GATD1Q8NB37 220 aa13.28□□□□□ -0.28
PTPRA-205ENST00000399903 PRTN3P24158 256 aa13.27□□□□□ -0.28
PTPRA-205ENST00000399903 ARL3P36405 182 aa13.27□□□□□ -0.28
PTPRA-205ENST00000399903 HES1Q14469 280 aa13.27□□□□□ -0.28
PTPRA-205ENST00000399903 HIF1ANQ9NWT6 349 aa13.27□□□□□ -0.29
PTPRA-205ENST00000399903 I3L2K1 104 aa13.26□□□□□ -0.29
PTPRA-205ENST00000399903 CELSR1Q9NYQ6 3014 aa13.26□□□□□ -0.29
PTPRA-205ENST00000399903 TEX22C9J3V5 150 aa13.26□□□□□ -0.29
PTPRA-205ENST00000399903 SMCPP49901 116 aaPredicted RBP13.26□□□□□ -0.29
PTPRA-205ENST00000399903 TRBV20-1A0A075B6N2 111 aa13.25□□□□□ -0.29
PTPRA-205ENST00000399903 ZNF815PA8K554 130 aa13.25□□□□□ -0.29
PTPRA-205ENST00000399903 ZMAT4Q9H898 229 aa13.25□□□□□ -0.29
PTPRA-205ENST00000399903 IGHV3-49A0A0A0MS15 119 aa13.25□□□□□ -0.29
PTPRA-205ENST00000399903 LY6DQ14210 128 aa13.25□□□□□ -0.29
PTPRA-205ENST00000399903 LAGE3Q14657 143 aa13.25□□□□□ -0.29
PTPRA-205ENST00000399903 MORN3Q6PF18 240 aaPredicted RBP13.25□□□□□ -0.29
PTPRA-205ENST00000399903 RNF182Q8N6D2 247 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms