RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 CHD8Q9HCK8 2581 aa15.91■□□□□ 0.14
CLK3-202ENST00000395066 NCOR2Q9Y618 2525 aa15.91■□□□□ 0.14
CLK3-202ENST00000395066 TM4SF20Q53R12 229 aa15.91■□□□□ 0.14
CLK3-202ENST00000395066 EBI3Q14213 229 aa15.91■□□□□ 0.14
CLK3-202ENST00000395066 ZFAND3Q9H8U3 227 aa15.91■□□□□ 0.14
CLK3-202ENST00000395066 SPTBN4Q9H254 2564 aa15.91■□□□□ 0.14
CLK3-202ENST00000395066 SPTAN1Q13813 2472 aaKnown RBP15.91■□□□□ 0.14
CLK3-202ENST00000395066 FBLL1A6NHQ2 334 aaKnown RBP15.9■□□□□ 0.14
CLK3-202ENST00000395066 ZNF502Q8TBZ5 544 aa15.9■□□□□ 0.14
CLK3-202ENST00000395066 PIFOQ8TCI5 191 aa15.9■□□□□ 0.14
CLK3-202ENST00000395066 PSMG3-AS1Q96PY0 264 aa15.9■□□□□ 0.14
CLK3-202ENST00000395066 SIRPDQ9H106 197 aa15.9■□□□□ 0.14
CLK3-202ENST00000395066 AJUBAQ96IF1 538 aa15.9■□□□□ 0.14
CLK3-202ENST00000395066 BUB3O43684 328 aa15.89■□□□□ 0.13
CLK3-202ENST00000395066 FABP2P12104 132 aa15.89■□□□□ 0.13
CLK3-202ENST00000395066 C11orf21Q9P2W6 132 aa15.89■□□□□ 0.13
CLK3-202ENST00000395066 SMIM13P0DJ93 91 aa15.89■□□□□ 0.13
CLK3-202ENST00000395066 LEPP41159 167 aa15.89■□□□□ 0.13
CLK3-202ENST00000395066 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15.89■□□□□ 0.13
CLK3-202ENST00000395066 CCDC140Q96MF4 163 aa15.89■□□□□ 0.13
CLK3-202ENST00000395066 LINC00527Q9UJ94 153 aa15.89■□□□□ 0.13
CLK3-202ENST00000395066 IGKV2D-26A0A0A0MRZ7 120 aa15.88■□□□□ 0.13
CLK3-202ENST00000395066 CLPSL1A2RUU4 121 aa15.88■□□□□ 0.13
CLK3-202ENST00000395066 FABP5P3A8MUU1 101 aa15.88■□□□□ 0.13
CLK3-202ENST00000395066 SAA4P35542 130 aa15.88■□□□□ 0.13
CLK3-202ENST00000395066 LINC01546A6NGU7 62 aa15.88■□□□□ 0.13
CLK3-202ENST00000395066 GCSHP23434 173 aa15.88■□□□□ 0.13
CLK3-202ENST00000395066 ODF1Q14990 250 aa15.88■□□□□ 0.13
CLK3-202ENST00000395066 SAMD5Q5TGI4 173 aa15.88■□□□□ 0.13
CLK3-202ENST00000395066 MINOS1Q5TGZ0 78 aa15.88■□□□□ 0.13
CLK3-202ENST00000395066 MINOS1-NBL1R4GNA1 71 aa15.88■□□□□ 0.13
CLK3-202ENST00000395066 FCER1GP30273 86 aa15.87■□□□□ 0.13
CLK3-202ENST00000395066 ZMAT4Q9H898 229 aa15.87■□□□□ 0.13
CLK3-202ENST00000395066 HHLA3Q9XRX5 114 aa15.87■□□□□ 0.13
CLK3-202ENST00000395066 IGHV3OR16-10A0A075B7F0 116 aa15.87■□□□□ 0.13
CLK3-202ENST00000395066 TRGV3P03979 118 aa15.87■□□□□ 0.13
CLK3-202ENST00000395066 PSMG4Q5JS54 123 aa15.87■□□□□ 0.13
CLK3-202ENST00000395066 TTTY13Q9BZ97 58 aa15.87■□□□□ 0.13
CLK3-202ENST00000395066 HIGD1BQ9P298 99 aa15.87■□□□□ 0.13
CLK3-202ENST00000395066 IGKV3D-20A0A0C4DH25 116 aa15.86■□□□□ 0.13
CLK3-202ENST00000395066 TMEM238C9JI98 176 aa15.86■□□□□ 0.13
CLK3-202ENST00000395066 FXYD2P54710 66 aa15.86■□□□□ 0.13
CLK3-202ENST00000395066 FAM110DQ8TAY7 271 aaPredicted RBP15.86■□□□□ 0.13
CLK3-202ENST00000395066 UBTD1Q9HAC8 227 aa15.86■□□□□ 0.13
CLK3-202ENST00000395066 PRSS1P07477 247 aa15.86■□□□□ 0.13
CLK3-202ENST00000395066 C1orf122Q6ZSJ8 110 aa15.86■□□□□ 0.13
CLK3-202ENST00000395066 TMEM219Q86XT9 240 aa15.86■□□□□ 0.13
CLK3-202ENST00000395066 CNFNQ9BYD5 112 aa15.86■□□□□ 0.13
CLK3-202ENST00000395066 AGPAT4-IT1Q9H0P7 198 aa15.86■□□□□ 0.13
CLK3-202ENST00000395066 NXT2Q9NPJ8 142 aaKnown RBP15.86■□□□□ 0.13
CLK3-202ENST00000395066 SCGB2A1O75556 95 aa15.85■□□□□ 0.13
CLK3-202ENST00000395066 TNFRSF6BO95407 300 aa15.85■□□□□ 0.13
CLK3-202ENST00000395066 SRSF2Q01130 221 aaKnown RBP15.85■□□□□ 0.13
CLK3-202ENST00000395066 TRAV26-2A0A0B4J265 109 aa15.85■□□□□ 0.13
CLK3-202ENST00000395066 CHAC1Q9BUX1 264 aa15.85■□□□□ 0.13
CLK3-202ENST00000395066 OOSP1A8MZH6 123 aa15.84■□□□□ 0.13
CLK3-202ENST00000395066 KLRB1Q12918 225 aa15.84■□□□□ 0.13
CLK3-202ENST00000395066 J3KRW8 73 aa15.84■□□□□ 0.13
CLK3-202ENST00000395066 SPRY2O43597 315 aa15.84■□□□□ 0.13
CLK3-202ENST00000395066 IGKCP01834 107 aa15.84■□□□□ 0.13
CLK3-202ENST00000395066 TRAV8-2A0A0B4J237 113 aa15.83■□□□□ 0.13
CLK3-202ENST00000395066 DTX2Q86UW9 622 aa15.83■□□□□ 0.13
CLK3-202ENST00000395066 BPESC1Q9GZL8 116 aa15.83■□□□□ 0.12
CLK3-202ENST00000395066 GOSR1O95249 250 aa15.82■□□□□ 0.12
CLK3-202ENST00000395066 SMIM17P0DL12 118 aa15.82■□□□□ 0.12
CLK3-202ENST00000395066 LINC01559Q495D7 138 aa15.82■□□□□ 0.12
CLK3-202ENST00000395066 TMEM158Q8WZ71 300 aa15.82■□□□□ 0.12
CLK3-202ENST00000395066 FOXC2Q99958 501 aa15.82■□□□□ 0.12
CLK3-202ENST00000395066 GTSCR1Q86UQ5 136 aa15.81■□□□□ 0.12
CLK3-202ENST00000395066 TRBV25-1A0A075B6N4 114 aa15.81■□□□□ 0.12
CLK3-202ENST00000395066 K7ERJ3 54 aa15.81■□□□□ 0.12
CLK3-202ENST00000395066 UBE2E1P51965 193 aa15.81■□□□□ 0.12
CLK3-202ENST00000395066 UFC1Q9Y3C8 167 aa15.81■□□□□ 0.12
CLK3-202ENST00000395066 IGF1P05019 195 aa15.81■□□□□ 0.12
CLK3-202ENST00000395066 DEFB1P60022 68 aa15.81■□□□□ 0.12
CLK3-202ENST00000395066 C8orf86Q6ZUL3 223 aa15.81■□□□□ 0.12
CLK3-202ENST00000395066 DPM2O94777 84 aa15.8■□□□□ 0.12
CLK3-202ENST00000395066 ZC2HC1BQ5TFG8 222 aa15.8■□□□□ 0.12
CLK3-202ENST00000395066 SMPXQ9UHP9 88 aa15.8■□□□□ 0.12
CLK3-202ENST00000395066 ATP5LO75964 103 aa15.8■□□□□ 0.12
CLK3-202ENST00000395066 RPL24P83731 157 aaKnown RBP15.79■□□□□ 0.12
CLK3-202ENST00000395066 PHLDA1Q8WV24 401 aaPredicted RBP15.79■□□□□ 0.12
CLK3-202ENST00000395066 TMEM8BA6NDV4 472 aa15.79■□□□□ 0.12
CLK3-202ENST00000395066 Q8N8P6 123 aa15.79■□□□□ 0.12
CLK3-202ENST00000395066 ABCA2Q9BZC7 2435 aa15.78■□□□□ 0.12
CLK3-202ENST00000395066 CENPVL3A0A0U1RRI6 287 aa15.78■□□□□ 0.12
CLK3-202ENST00000395066 PRR9Q5T870 116 aa15.78■□□□□ 0.12
CLK3-202ENST00000395066 CEND1Q8N111 149 aa15.78■□□□□ 0.12
CLK3-202ENST00000395066 NHP2Q9NX24 153 aaKnown RBP15.78■□□□□ 0.12
CLK3-202ENST00000395066 TMEM78Q5T7P6 136 aa15.78■□□□□ 0.12
CLK3-202ENST00000395066 IGHV7-4-1A0A0J9YVY3 117 aa15.77■□□□□ 0.12
CLK3-202ENST00000395066 METTL26Q96S19 204 aa15.77■□□□□ 0.12
CLK3-202ENST00000395066 SLC50A1Q9BRV3 221 aa15.77■□□□□ 0.12
CLK3-202ENST00000395066 TM2D2Q9BX73 214 aa15.77■□□□□ 0.12
CLK3-202ENST00000395066 IGLV2-18A0A075B6J9 118 aa15.77■□□□□ 0.11
CLK3-202ENST00000395066 TEX48A0A1B0GUV7 120 aa15.77■□□□□ 0.11
CLK3-202ENST00000395066 LMO4P61968 165 aa15.77■□□□□ 0.11
CLK3-202ENST00000395066 LY6DQ14210 128 aa15.77■□□□□ 0.11
CLK3-202ENST00000395066 EEF1AKMT3Q96AZ1 226 aa15.77■□□□□ 0.11
CLK3-202ENST00000395066 TMEM160Q9NX00 188 aa15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms