RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 KRTAP21-3Q3LHN1 58 aa11.93□□□□□ -0.5
CCDC40-202ENST00000374876 LCN12Q6JVE5 192 aa11.93□□□□□ -0.5
CCDC40-202ENST00000374876 Q8TAT8 98 aa11.93□□□□□ -0.5
CCDC40-202ENST00000374876 VGLL1Q99990 258 aa11.93□□□□□ -0.5
CCDC40-202ENST00000374876 TRAV41A0A0B4J266 112 aa11.92□□□□□ -0.5
CCDC40-202ENST00000374876 IGHG4P01861 327 aa11.92□□□□□ -0.5
CCDC40-202ENST00000374876 RAB4AP20338 218 aa11.92□□□□□ -0.5
CCDC40-202ENST00000374876 ATP5G2Q06055 141 aa11.92□□□□□ -0.5
CCDC40-202ENST00000374876 PMCHL1Q16048 86 aa11.92□□□□□ -0.5
CCDC40-202ENST00000374876 GATD1Q8NB37 220 aa11.92□□□□□ -0.5
CCDC40-202ENST00000374876 A0A087X0K7 114 aa11.91□□□□□ -0.5
CCDC40-202ENST00000374876 IGHV1-24A0A0C4DH33 117 aa11.91□□□□□ -0.5
CCDC40-202ENST00000374876 CTRLP40313 264 aa11.91□□□□□ -0.5
CCDC40-202ENST00000374876 IGHV3-66A0A0C4DH42 116 aa11.91□□□□□ -0.5
CCDC40-202ENST00000374876 CLPSL1A2RUU4 121 aa11.91□□□□□ -0.5
CCDC40-202ENST00000374876 C2orf70A6NJV1 201 aa11.91□□□□□ -0.5
CCDC40-202ENST00000374876 BMI1P35226 326 aa11.91□□□□□ -0.5
CCDC40-202ENST00000374876 LYZL1Q6UWQ5 148 aa11.91□□□□□ -0.5
CCDC40-202ENST00000374876 METTL26Q96S19 204 aa11.91□□□□□ -0.5
CCDC40-202ENST00000374876 CLEC5AQ9NY25 188 aa11.91□□□□□ -0.5
CCDC40-202ENST00000374876 BLCAPP62952 87 aa11.9□□□□□ -0.5
CCDC40-202ENST00000374876 Q6ZSV7 163 aa11.9□□□□□ -0.5
CCDC40-202ENST00000374876 MRPL52Q86TS9 123 aaKnown RBP11.9□□□□□ -0.5
CCDC40-202ENST00000374876 ATOH7Q8N100 152 aa11.9□□□□□ -0.5
CCDC40-202ENST00000374876 TMEM70Q9BUB7 260 aa11.9□□□□□ -0.5
CCDC40-202ENST00000374876 RPS20P60866 119 aaKnown RBP11.89□□□□□ -0.51
CCDC40-202ENST00000374876 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 Q6ZS46 218 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 SLC50A1Q9BRV3 221 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 LINC00527Q9UJ94 153 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 IGHV3OR16-13A0A075B7E8 117 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 IGHV3-74A0A0B4J1X5 117 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 TMEM89A2RUT3 159 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 FAM223BA6NKX1 122 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 M0QZK8 103 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 LEPROTL1O95214 131 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 CSN3P07498 182 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 ZNF138P52744 262 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 SSTP61278 116 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 DMRTA1Q5VZB9 504 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 ZNF493Q6ZR52 646 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 FAM223AQ8IWN6 122 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 RNF182Q8N6D2 247 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 KLHDC1Q8N7A1 406 aa11.89□□□□□ -0.51
CCDC40-202ENST00000374876 ZNF207O43670 478 aaKnown RBP11.88□□□□□ -0.51
CCDC40-202ENST00000374876 ZNF80P51504 273 aaPredicted RBP11.88□□□□□ -0.51
CCDC40-202ENST00000374876 UQCR10Q9UDW1 63 aa11.88□□□□□ -0.51
CCDC40-202ENST00000374876 IGHV3-49A0A0A0MS15 119 aa11.87□□□□□ -0.51
CCDC40-202ENST00000374876 TRGV3P03979 118 aa11.87□□□□□ -0.51
CCDC40-202ENST00000374876 OR5AL1P0C617 328 aa11.87□□□□□ -0.51
CCDC40-202ENST00000374876 ERCC8Q13216 396 aa11.87□□□□□ -0.51
CCDC40-202ENST00000374876 C19orf54Q5BKX5 351 aa11.87□□□□□ -0.51
CCDC40-202ENST00000374876 ATP6V0BQ99437 205 aa11.87□□□□□ -0.51
CCDC40-202ENST00000374876 TMEM213A2RRL7 107 aa11.87□□□□□ -0.51
CCDC40-202ENST00000374876 RBAKDNA6NC62 111 aa11.87□□□□□ -0.51
CCDC40-202ENST00000374876 PRAC2D3DTV9 90 aa11.87□□□□□ -0.51
CCDC40-202ENST00000374876 IGLC3P0DOY3 106 aa11.87□□□□□ -0.51
CCDC40-202ENST00000374876 CRIP2P52943 208 aaPredicted RBP11.87□□□□□ -0.51
CCDC40-202ENST00000374876 NUTF2P61970 127 aaKnown RBP11.87□□□□□ -0.51
CCDC40-202ENST00000374876 LINC01006Q8NI28 216 aa11.87□□□□□ -0.51
CCDC40-202ENST00000374876 NPFFR1Q9GZQ6 430 aa11.87□□□□□ -0.51
CCDC40-202ENST00000374876 TRAV9-2A0A087WT02 112 aa11.86□□□□□ -0.51
CCDC40-202ENST00000374876 FER1L6-AS1Q8NA97 138 aa11.86□□□□□ -0.51
CCDC40-202ENST00000374876 MUC21A0A0G2JKD1 596 aa11.86□□□□□ -0.51
CCDC40-202ENST00000374876 MUC21A0A140T8X8 626 aa11.86□□□□□ -0.51
CCDC40-202ENST00000374876 FABP5P3A8MUU1 101 aa11.86□□□□□ -0.51
CCDC40-202ENST00000374876 NDUFA7O95182 113 aa11.86□□□□□ -0.51
CCDC40-202ENST00000374876 ORM1P02763 201 aa11.86□□□□□ -0.51
CCDC40-202ENST00000374876 MAJINQ3KP22 176 aa11.86□□□□□ -0.51
CCDC40-202ENST00000374876 MUC21Q5SSG8 566 aa11.86□□□□□ -0.51
CCDC40-202ENST00000374876 AP5S1Q9NUS5 200 aa11.86□□□□□ -0.51
CCDC40-202ENST00000374876 C20orf202A1L168 122 aa11.85□□□□□ -0.51
CCDC40-202ENST00000374876 SYS1-DBNDD2H3BUS1 97 aa11.85□□□□□ -0.51
CCDC40-202ENST00000374876 CRXO43186 299 aaPredicted RBP11.85□□□□□ -0.51
CCDC40-202ENST00000374876 TWIST1Q15672 202 aa11.85□□□□□ -0.51
CCDC40-202ENST00000374876 FAM104BQ5XKR9 115 aa11.85□□□□□ -0.51
CCDC40-202ENST00000374876 LINC00173Q6ZV60 143 aa11.85□□□□□ -0.51
CCDC40-202ENST00000374876 FA2HQ7L5A8 372 aa11.85□□□□□ -0.51
CCDC40-202ENST00000374876 PRSS3P2Q8NHM4 247 aa11.85□□□□□ -0.51
CCDC40-202ENST00000374876 ZNF702PQ9H963 129 aa11.85□□□□□ -0.51
CCDC40-202ENST00000374876 D6R8Y8 96 aa11.84□□□□□ -0.51
CCDC40-202ENST00000374876 IGF1P05019 195 aa11.84□□□□□ -0.51
CCDC40-202ENST00000374876 ARL3P36405 182 aa11.84□□□□□ -0.51
CCDC40-202ENST00000374876 Q6ZN92 141 aa11.84□□□□□ -0.51
CCDC40-202ENST00000374876 C8orf86Q6ZUL3 223 aa11.84□□□□□ -0.51
CCDC40-202ENST00000374876 SPATA12Q7Z6I5 190 aa11.84□□□□□ -0.51
CCDC40-202ENST00000374876 AMN1Q8IY45 258 aa11.84□□□□□ -0.51
CCDC40-202ENST00000374876 MAP1LC3CQ9BXW4 147 aa11.84□□□□□ -0.51
CCDC40-202ENST00000374876 HSPB8Q9UJY1 196 aa11.84□□□□□ -0.51
CCDC40-202ENST00000374876 U3KQE9 123 aa11.84□□□□□ -0.51
CCDC40-202ENST00000374876 IGLC6P0CF74 106 aa11.84□□□□□ -0.51
CCDC40-202ENST00000374876 TMEM95Q3KNT9 176 aa11.84□□□□□ -0.51
CCDC40-202ENST00000374876 C16orf95Q9H693 158 aa11.84□□□□□ -0.51
CCDC40-202ENST00000374876 STAB1Q9NY15 2570 aa11.83□□□□□ -0.51
CCDC40-202ENST00000374876 TENM1Q9UKZ4 2725 aa11.83□□□□□ -0.52
CCDC40-202ENST00000374876 TRAV8-2A0A0B4J237 113 aa11.83□□□□□ -0.52
CCDC40-202ENST00000374876 C12orf54Q6X4T0 127 aa11.83□□□□□ -0.52
CCDC40-202ENST00000374876 ORMDL3Q8N138 153 aa11.83□□□□□ -0.52
CCDC40-202ENST00000374876 MRPL53Q96EL3 112 aaKnown RBP11.83□□□□□ -0.52
CCDC40-202ENST00000374876 TIMM8BQ9Y5J9 83 aaPredicted RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms