RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 IGLV3-9A0A075B6K5 115 aa12.62□□□□□ -0.39
COL17A1-202ENST00000369733 MYO7BQ6PIF6 2116 aa12.62□□□□□ -0.39
COL17A1-202ENST00000369733 C1QTNF4Q9BXJ3 329 aa12.61□□□□□ -0.39
COL17A1-202ENST00000369733 KMT2EQ8IZD2 1858 aa12.61□□□□□ -0.39
COL17A1-202ENST00000369733 POLEQ07864 2286 aa12.61□□□□□ -0.39
COL17A1-202ENST00000369733 I3L3M4 83 aa12.61□□□□□ -0.39
COL17A1-202ENST00000369733 ZNF625Q96I27 306 aaPredicted RBP12.61□□□□□ -0.39
COL17A1-202ENST00000369733 IGHV3-53P01767 116 aa12.6□□□□□ -0.39
COL17A1-202ENST00000369733 TRBV25-1A0A075B6N4 114 aa12.6□□□□□ -0.39
COL17A1-202ENST00000369733 G3V318 75 aa12.6□□□□□ -0.39
COL17A1-202ENST00000369733 HTN3P15516 51 aa12.6□□□□□ -0.39
COL17A1-202ENST00000369733 SH2D6Q7Z4S9 175 aa12.6□□□□□ -0.39
COL17A1-202ENST00000369733 GP9P14770 177 aa12.59□□□□□ -0.39
COL17A1-202ENST00000369733 PATE2Q6UY27 113 aa12.59□□□□□ -0.39
COL17A1-202ENST00000369733 C20orf78Q9BR46 151 aa12.59□□□□□ -0.39
COL17A1-202ENST00000369733 IGLL5B9A064 214 aa12.59□□□□□ -0.39
COL17A1-202ENST00000369733 HLA-DMBP28068 263 aa12.59□□□□□ -0.39
COL17A1-202ENST00000369733 CHD3Q12873 2000 aaKnown RBP12.59□□□□□ -0.39
COL17A1-202ENST00000369733 J3QQQ9 107 aa12.59□□□□□ -0.39
COL17A1-202ENST00000369733 GTSF1Q8WW33 167 aa12.58□□□□□ -0.39
COL17A1-202ENST00000369733 SPTBN1Q01082 2364 aaKnown RBP12.58□□□□□ -0.4
COL17A1-202ENST00000369733 DTX1Q86Y01 620 aa12.58□□□□□ -0.4
COL17A1-202ENST00000369733 FAM167A-AS1Q96KT0 104 aa12.58□□□□□ -0.4
COL17A1-202ENST00000369733 ODF3L1Q8IXM7 274 aa12.58□□□□□ -0.4
COL17A1-202ENST00000369733 GATA1P15976 413 aaPredicted RBP12.57□□□□□ -0.4
COL17A1-202ENST00000369733 DYNAPQ8N1N2 210 aa12.57□□□□□ -0.4
COL17A1-202ENST00000369733 JPT2Q9H910 190 aa12.57□□□□□ -0.4
COL17A1-202ENST00000369733 KNCNA6PVL3 124 aa12.57□□□□□ -0.4
COL17A1-202ENST00000369733 PIP4P2Q8N4L2 257 aa12.57□□□□□ -0.4
COL17A1-202ENST00000369733 PRSS29PA6NIE9 313 aa12.57□□□□□ -0.4
COL17A1-202ENST00000369733 CFHR4Q92496 578 aa12.57□□□□□ -0.4
COL17A1-202ENST00000369733 LAMTOR3Q9UHA4 124 aa12.57□□□□□ -0.4
COL17A1-202ENST00000369733 KLK9Q9UKQ9 250 aa12.57□□□□□ -0.4
COL17A1-202ENST00000369733 INTS1Q8N201 2190 aaKnown RBP12.57□□□□□ -0.4
COL17A1-202ENST00000369733 INAFM2P0DMQ5 153 aa12.56□□□□□ -0.4
COL17A1-202ENST00000369733 UBE2E1P51965 193 aa12.56□□□□□ -0.4
COL17A1-202ENST00000369733 NDUFA12Q9UI09 145 aa12.56□□□□□ -0.4
COL17A1-202ENST00000369733 PKDREJQ9NTG1 2253 aa12.56□□□□□ -0.4
COL17A1-202ENST00000369733 YPEL4Q96NS1 127 aa12.56□□□□□ -0.4
COL17A1-202ENST00000369733 INSP01308 110 aa12.56□□□□□ -0.4
COL17A1-202ENST00000369733 CNOT1A5YKK6 2376 aaKnown RBP12.56□□□□□ -0.4
COL17A1-202ENST00000369733 SPINK13Q1W4C9 94 aa12.56□□□□□ -0.4
COL17A1-202ENST00000369733 C6orf226Q5I0X4 101 aa12.56□□□□□ -0.4
COL17A1-202ENST00000369733 FOXI2Q6ZQN5 318 aa12.56□□□□□ -0.4
COL17A1-202ENST00000369733 BOD1L2Q8IYS8 172 aa12.56□□□□□ -0.4
COL17A1-202ENST00000369733 MSRB2Q9Y3D2 182 aa12.56□□□□□ -0.4
COL17A1-202ENST00000369733 C8orf31Q8N9H6 132 aa12.55□□□□□ -0.4
COL17A1-202ENST00000369733 NTN5Q8WTR8 489 aaPredicted RBP12.55□□□□□ -0.4
COL17A1-202ENST00000369733 SPRNQ5BIV9 151 aa12.55□□□□□ -0.4
COL17A1-202ENST00000369733 CARD19Q96LW7 228 aa12.55□□□□□ -0.4
COL17A1-202ENST00000369733 C11orf44Q8N8P7 122 aa12.55□□□□□ -0.4
COL17A1-202ENST00000369733 DNAJC30Q96LL9 226 aa12.55□□□□□ -0.4
COL17A1-202ENST00000369733 BPESC1Q9GZL8 116 aa12.55□□□□□ -0.4
COL17A1-202ENST00000369733 ALPK3Q96L96 1907 aa12.54□□□□□ -0.4
COL17A1-202ENST00000369733 PLA2G5P39877 138 aa12.54□□□□□ -0.4
COL17A1-202ENST00000369733 FXYD2P54710 66 aa12.54□□□□□ -0.4
COL17A1-202ENST00000369733 WNK2Q9Y3S1 2297 aa12.54□□□□□ -0.4
COL17A1-202ENST00000369733 RUSC1-AS1Q66K80 236 aa12.54□□□□□ -0.4
COL17A1-202ENST00000369733 C22orf46C9J442 243 aa12.54□□□□□ -0.4
COL17A1-202ENST00000369733 SYNJ2BPP57105 145 aa12.54□□□□□ -0.4
COL17A1-202ENST00000369733 IGHV1OR15-1A0A075B7D0 117 aa12.53□□□□□ -0.4
COL17A1-202ENST00000369733 SHISA9B4DS77 424 aa12.53□□□□□ -0.4
COL17A1-202ENST00000369733 UBE2E2Q96LR5 201 aa12.53□□□□□ -0.4
COL17A1-202ENST00000369733 AGPAT4-IT1Q9H0P7 198 aa12.53□□□□□ -0.4
COL17A1-202ENST00000369733 NUP210Q8TEM1 1887 aaPredicted RBP12.53□□□□□ -0.4
COL17A1-202ENST00000369733 GAGE12JA6NER3 117 aa12.53□□□□□ -0.4
COL17A1-202ENST00000369733 K7EMI3 77 aa12.53□□□□□ -0.4
COL17A1-202ENST00000369733 GAGE7O76087 117 aa12.53□□□□□ -0.4
COL17A1-202ENST00000369733 LHBP01229 141 aa12.53□□□□□ -0.4
COL17A1-202ENST00000369733 GAGE12FP0CL80 117 aa12.53□□□□□ -0.4
COL17A1-202ENST00000369733 GAGE12GP0CL81 117 aa12.53□□□□□ -0.4
COL17A1-202ENST00000369733 GAGE12IP0CL82 117 aa12.53□□□□□ -0.4
COL17A1-202ENST00000369733 GAGE4Q13068 117 aa12.53□□□□□ -0.4
COL17A1-202ENST00000369733 ZNF106Q9H2Y7 1883 aaKnown RBP12.53□□□□□ -0.4
COL17A1-202ENST00000369733 NCOR1O75376 2440 aa12.53□□□□□ -0.4
COL17A1-202ENST00000369733 IGKV1OR2-108A0A075B7D4 117 aa12.53□□□□□ -0.4
COL17A1-202ENST00000369733 C15orf53Q8NAA6 179 aa12.53□□□□□ -0.4
COL17A1-202ENST00000369733 CFC1BP0CG36 223 aa12.52□□□□□ -0.4
COL17A1-202ENST00000369733 CFC1P0CG37 223 aa12.52□□□□□ -0.4
COL17A1-202ENST00000369733 FOXE3Q13461 319 aa12.52□□□□□ -0.4
COL17A1-202ENST00000369733 DEFB131AP59861 70 aa12.52□□□□□ -0.4
COL17A1-202ENST00000369733 ZNF493Q6ZR52 646 aa12.52□□□□□ -0.4
COL17A1-202ENST00000369733 CITED2Q99967 270 aaPredicted RBP12.52□□□□□ -0.4
COL17A1-202ENST00000369733 KAAG1Q9UBP8 84 aa12.52□□□□□ -0.4
COL17A1-202ENST00000369733 NDUFA4O00483 81 aa12.52□□□□□ -0.41
COL17A1-202ENST00000369733 WFDC2Q14508 124 aa12.52□□□□□ -0.41
COL17A1-202ENST00000369733 UTF1Q5T230 341 aa12.52□□□□□ -0.41
COL17A1-202ENST00000369733 TRAV12-2A0A075B6T6 113 aa12.51□□□□□ -0.41
COL17A1-202ENST00000369733 MSRB1Q9NZV6 116 aa12.51□□□□□ -0.41
COL17A1-202ENST00000369733 EP300Q09472 2414 aaPredicted RBP12.51□□□□□ -0.41
COL17A1-202ENST00000369733 RHODO00212 210 aa12.51□□□□□ -0.41
COL17A1-202ENST00000369733 SOCS3O14543 225 aa12.51□□□□□ -0.41
COL17A1-202ENST00000369733 DOCK10Q96BY6 2186 aa12.51□□□□□ -0.41
COL17A1-202ENST00000369733 TTTY13Q9BZ97 58 aa12.51□□□□□ -0.41
COL17A1-202ENST00000369733 SS18L2Q9UHA2 77 aa12.51□□□□□ -0.41
COL17A1-202ENST00000369733 B5MCH6 92 aa12.51□□□□□ -0.41
COL17A1-202ENST00000369733 CTSZQ9UBR2 303 aa12.51□□□□□ -0.41
COL17A1-202ENST00000369733 RBAKDNA6NC62 111 aa12.51□□□□□ -0.41
COL17A1-202ENST00000369733 G3V4G9 280 aa12.51□□□□□ -0.41
COL17A1-202ENST00000369733 Q6ZPA2 131 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms