RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 FAM210BQ96KR6 192 aa14.75□□□□□ -0.05
CLN3-205ENST00000359984 LINC00469Q8N7U9 141 aa14.74□□□□□ -0.05
CLN3-205ENST00000359984 ZC2HC1AQ96GY0 325 aa14.74□□□□□ -0.05
CLN3-205ENST00000359984 NDFIP1Q9BT67 221 aa14.74□□□□□ -0.05
CLN3-205ENST00000359984 C19orf73Q9NVV2 129 aa14.74□□□□□ -0.05
CLN3-205ENST00000359984 DUSP14O95147 198 aaKnown RBP14.74□□□□□ -0.05
CLN3-205ENST00000359984 FAM110AQ9BQ89 295 aa14.74□□□□□ -0.05
CLN3-205ENST00000359984 LENEPQ9Y5L5 61 aa14.74□□□□□ -0.05
CLN3-205ENST00000359984 C5orf52A6NGY3 159 aa14.73□□□□□ -0.05
CLN3-205ENST00000359984 H3BMM0 161 aa14.73□□□□□ -0.05
CLN3-205ENST00000359984 IGKV3-20P01619 116 aa14.73□□□□□ -0.05
CLN3-205ENST00000359984 HLA-DRB4P13762 266 aa14.73□□□□□ -0.05
CLN3-205ENST00000359984 OXLD1Q5BKU9 147 aa14.73□□□□□ -0.05
CLN3-205ENST00000359984 COX8CQ7Z4L0 72 aa14.73□□□□□ -0.05
CLN3-205ENST00000359984 OR4B1Q8NGF8 309 aa14.73□□□□□ -0.05
CLN3-205ENST00000359984 FAM19A4Q96LR4 140 aa14.73□□□□□ -0.05
CLN3-205ENST00000359984 HLA-DRB4X5D2U9 266 aa14.73□□□□□ -0.05
CLN3-205ENST00000359984 PRR27Q6MZM9 219 aa14.72□□□□□ -0.05
CLN3-205ENST00000359984 LINC00322Q6ZN03 302 aaPredicted RBP14.72□□□□□ -0.05
CLN3-205ENST00000359984 PKD1L1Q8TDX9 2849 aa14.72□□□□□ -0.05
CLN3-205ENST00000359984 CRIP1P50238 77 aa14.71□□□□□ -0.05
CLN3-205ENST00000359984 SFRP2Q96HF1 295 aa14.71□□□□□ -0.05
CLN3-205ENST00000359984 RNASE7Q9H1E1 156 aaKnown RBP14.71□□□□□ -0.05
CLN3-205ENST00000359984 WFDC10AQ9H1F0 79 aa14.71□□□□□ -0.05
CLN3-205ENST00000359984 AGRNO00468 2067 aa14.71□□□□□ -0.05
CLN3-205ENST00000359984 A8MTW9 85 aa14.7□□□□□ -0.06
CLN3-205ENST00000359984 PHOX2AO14813 284 aa14.7□□□□□ -0.06
CLN3-205ENST00000359984 SNRPEP62304 92 aaKnown RBP14.7□□□□□ -0.06
CLN3-205ENST00000359984 ZFAND2AQ8N6M9 145 aa14.7□□□□□ -0.06
CLN3-205ENST00000359984 TRBV7-9A0A0J9YWB2 115 aa14.69□□□□□ -0.06
CLN3-205ENST00000359984 PPP1R2P9O14990 202 aa14.69□□□□□ -0.06
CLN3-205ENST00000359984 ZNF80P51504 273 aaPredicted RBP14.69□□□□□ -0.06
CLN3-205ENST00000359984 ERVFC1-1P60608 527 aa14.69□□□□□ -0.06
CLN3-205ENST00000359984 AMTNQ6UX39 209 aa14.69□□□□□ -0.06
CLN3-205ENST00000359984 ODF3Q96PU9 254 aa14.69□□□□□ -0.06
CLN3-205ENST00000359984 CRISP2P16562 243 aa14.69□□□□□ -0.06
CLN3-205ENST00000359984 PRR9Q5T870 116 aa14.69□□□□□ -0.06
CLN3-205ENST00000359984 IMMP2LQ96T52 175 aa14.69□□□□□ -0.06
CLN3-205ENST00000359984 C19orf71A6NCJ1 209 aa14.68□□□□□ -0.06
CLN3-205ENST00000359984 RBMY1BA6NDE4 496 aaKnown RBP14.68□□□□□ -0.06
CLN3-205ENST00000359984 RBMY1EA6NEQ0 496 aaKnown RBP14.68□□□□□ -0.06
CLN3-205ENST00000359984 J3KRW8 73 aa14.68□□□□□ -0.06
CLN3-205ENST00000359984 UBE2CO00762 179 aa14.68□□□□□ -0.06
CLN3-205ENST00000359984 RBMY1DP0C7P1 496 aaKnown RBP14.68□□□□□ -0.06
CLN3-205ENST00000359984 S100PP25815 95 aa14.68□□□□□ -0.06
CLN3-205ENST00000359984 KIR3DS1Q14943 382 aa14.68□□□□□ -0.06
CLN3-205ENST00000359984 GTSCR1Q86UQ5 136 aa14.68□□□□□ -0.06
CLN3-205ENST00000359984 SRD5A3Q9H8P0 318 aa14.68□□□□□ -0.06
CLN3-205ENST00000359984 TRGC2P03986 189 aa14.67□□□□□ -0.06
CLN3-205ENST00000359984 IBA57Q5T440 356 aaKnown RBP14.67□□□□□ -0.06
CLN3-205ENST00000359984 FAM231DQ6ZW35 169 aa14.67□□□□□ -0.06
CLN3-205ENST00000359984 NUDT10Q8NFP7 164 aa14.67□□□□□ -0.06
CLN3-205ENST00000359984 OR10G8Q8NGN5 311 aa14.67□□□□□ -0.06
CLN3-205ENST00000359984 NUDT11Q96G61 164 aa14.67□□□□□ -0.06
CLN3-205ENST00000359984 OSTCQ9NRP0 149 aa14.67□□□□□ -0.06
CLN3-205ENST00000359984 CMYA5Q8N3K9 4069 aa14.67□□□□□ -0.06
CLN3-205ENST00000359984 FAM162BQ5T6X4 162 aa14.67□□□□□ -0.06
CLN3-205ENST00000359984 STHQ8IWL8 128 aa14.67□□□□□ -0.06
CLN3-205ENST00000359984 SH2D1AO60880 128 aa14.66□□□□□ -0.06
CLN3-205ENST00000359984 S100A6P06703 90 aa14.66□□□□□ -0.06
CLN3-205ENST00000359984 GPX1P07203 203 aa14.66□□□□□ -0.06
CLN3-205ENST00000359984 LEPP41159 167 aa14.66□□□□□ -0.06
CLN3-205ENST00000359984 TRPT1Q86TN4 253 aaKnown RBP14.66□□□□□ -0.06
CLN3-205ENST00000359984 DEFB125Q8N687 156 aa14.66□□□□□ -0.06
CLN3-205ENST00000359984 DAZAP1Q96EP5 407 aaKnown RBP14.66□□□□□ -0.06
CLN3-205ENST00000359984 CLUHP3Q96NS8 147 aa14.66□□□□□ -0.06
CLN3-205ENST00000359984 KLLNB2CW77 178 aa14.65□□□□□ -0.06
CLN3-205ENST00000359984 M0R2Z0 102 aa14.65□□□□□ -0.06
CLN3-205ENST00000359984 TYMSP04818 313 aa14.65□□□□□ -0.06
CLN3-205ENST00000359984 RNASE4P34096 147 aaKnown RBP14.65□□□□□ -0.06
CLN3-205ENST00000359984 SPINK13Q1W4C9 94 aa14.65□□□□□ -0.06
CLN3-205ENST00000359984 Q6ZQT7 251 aa14.65□□□□□ -0.06
CLN3-205ENST00000359984 HIST1H2BKO60814 126 aa14.65□□□□□ -0.06
CLN3-205ENST00000359984 HIST1H2BJP06899 126 aa14.65□□□□□ -0.06
CLN3-205ENST00000359984 HIST1H2BOP23527 126 aa14.65□□□□□ -0.06
CLN3-205ENST00000359984 HIST1H2BBP33778 126 aa14.65□□□□□ -0.06
CLN3-205ENST00000359984 HIST1H2BDP58876 126 aa14.65□□□□□ -0.06
CLN3-205ENST00000359984 HIST1H2BCP62807 126 aa14.65□□□□□ -0.06
CLN3-205ENST00000359984 HIST2H2BEQ16778 126 aa14.65□□□□□ -0.06
CLN3-205ENST00000359984 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.65□□□□□ -0.06
CLN3-205ENST00000359984 Q8N1Y9 231 aa14.65□□□□□ -0.06
CLN3-205ENST00000359984 HIST1H2BHQ93079 126 aa14.65□□□□□ -0.06
CLN3-205ENST00000359984 HIST1H2BNQ99877 126 aa14.65□□□□□ -0.06
CLN3-205ENST00000359984 HIST1H2BMQ99879 126 aa14.65□□□□□ -0.06
CLN3-205ENST00000359984 V9GYV3 84 aa14.65□□□□□ -0.06
CLN3-205ENST00000359984 FABP5P3A8MUU1 101 aa14.64□□□□□ -0.07
CLN3-205ENST00000359984 TSPOP30536 169 aa14.64□□□□□ -0.07
CLN3-205ENST00000359984 CDKN1BP46527 198 aa14.64□□□□□ -0.07
CLN3-205ENST00000359984 FXYD7P58549 80 aa14.64□□□□□ -0.07
CLN3-205ENST00000359984 KRTAP10-11P60412 298 aa14.64□□□□□ -0.07
CLN3-205ENST00000359984 EGFEM1PQ0D2K5 195 aa14.64□□□□□ -0.07
CLN3-205ENST00000359984 KCNIP4Q6PIL6 250 aa14.64□□□□□ -0.07
CLN3-205ENST00000359984 FRZBQ92765 325 aa14.64□□□□□ -0.07
CLN3-205ENST00000359984 A0A1W2PPQ1 181 aa14.63□□□□□ -0.07
CLN3-205ENST00000359984 G3V4G9 280 aa14.63□□□□□ -0.07
CLN3-205ENST00000359984 GATCO43716 136 aaKnown RBP14.63□□□□□ -0.07
CLN3-205ENST00000359984 P01737 135 aa14.63□□□□□ -0.07
CLN3-205ENST00000359984 TRAV12-2A0A075B6T6 113 aa14.63□□□□□ -0.07
CLN3-205ENST00000359984 ZNF705GA8MUZ8 300 aaPredicted RBP14.63□□□□□ -0.07
CLN3-205ENST00000359984 FAM3BP58499 235 aaPredicted RBP14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms