RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 MAP6D1Q9H9H5 199 aa13.91□□□□□ -0.18
CLN3-204ENST00000357857 TENM1Q9UKZ4 2725 aa13.91□□□□□ -0.18
CLN3-204ENST00000357857 AGRNO00468 2067 aa13.91□□□□□ -0.18
CLN3-204ENST00000357857 FABP5P3A8MUU1 101 aa13.9□□□□□ -0.18
CLN3-204ENST00000357857 DUSP14O95147 198 aaKnown RBP13.9□□□□□ -0.18
CLN3-204ENST00000357857 RAB5AP20339 215 aa13.9□□□□□ -0.18
CLN3-204ENST00000357857 TSKUQ8WUA8 353 aa13.9□□□□□ -0.18
CLN3-204ENST00000357857 FAM210BQ96KR6 192 aa13.9□□□□□ -0.18
CLN3-204ENST00000357857 A8MWL6 223 aa13.9□□□□□ -0.18
CLN3-204ENST00000357857 TCL1AP56279 114 aa13.9□□□□□ -0.18
CLN3-204ENST00000357857 ZFAND2AQ8N6M9 145 aa13.9□□□□□ -0.18
CLN3-204ENST00000357857 TRAV9-1A0A075B6T8 112 aa13.89□□□□□ -0.19
CLN3-204ENST00000357857 CRISP2P16562 243 aa13.89□□□□□ -0.19
CLN3-204ENST00000357857 BTF3L4Q96K17 158 aa13.89□□□□□ -0.19
CLN3-204ENST00000357857 ODF3Q96PU9 254 aa13.89□□□□□ -0.19
CLN3-204ENST00000357857 RPL19P84098 196 aaKnown RBP13.88□□□□□ -0.19
CLN3-204ENST00000357857 PRR9Q5T870 116 aa13.88□□□□□ -0.19
CLN3-204ENST00000357857 TMEM189A5PLL7 270 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 KNCNA6PVL3 124 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 J3KRW8 73 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 C3orf56Q8N813 242 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 TMEM158Q8WZ71 300 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 NEU1Q99519 415 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 IGKV3-20P01619 116 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 GPX1P07203 203 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 HLA-DRB4P13762 266 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 LEPP41159 167 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 ODF3L2Q3SX64 289 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 ACTL10Q5JWF8 245 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 C9orf66Q5T8R8 295 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 C12orf54Q6X4T0 127 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 APRG1Q8IVJ8 170 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 GFRA4Q9GZZ7 299 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 NAT8BQ9UHF3 227 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 HLA-DRB4X5D2U9 266 aa13.87□□□□□ -0.19
CLN3-204ENST00000357857 INSL3P51460 131 aa13.86□□□□□ -0.19
CLN3-204ENST00000357857 ZNF124Q15973 351 aa13.86□□□□□ -0.19
CLN3-204ENST00000357857 SPATA3Q8NHX4 192 aa13.86□□□□□ -0.19
CLN3-204ENST00000357857 TMA7Q9Y2S6 64 aaKnown RBP13.86□□□□□ -0.19
CLN3-204ENST00000357857 FAM231BA6NCW3 169 aa13.85□□□□□ -0.19
CLN3-204ENST00000357857 HIGD1CA8MV81 97 aa13.85□□□□□ -0.19
CLN3-204ENST00000357857 OR11H12B2RN74 326 aa13.85□□□□□ -0.19
CLN3-204ENST00000357857 ORM1P02763 201 aa13.85□□□□□ -0.19
CLN3-204ENST00000357857 GZMBP10144 247 aa13.85□□□□□ -0.19
CLN3-204ENST00000357857 RPS10P46783 165 aaKnown RBP13.85□□□□□ -0.19
CLN3-204ENST00000357857 CMC4P56277 68 aaPredicted RBP13.85□□□□□ -0.19
CLN3-204ENST00000357857 NUP35Q8NFH5 326 aa13.85□□□□□ -0.19
CLN3-204ENST00000357857 GTSF1Q8WW33 167 aa13.85□□□□□ -0.19
CLN3-204ENST00000357857 TMSB15BA0A087X1C1 80 aa13.84□□□□□ -0.19
CLN3-204ENST00000357857 XKRY2A2RUG3 117 aa13.84□□□□□ -0.19
CLN3-204ENST00000357857 KLLNB2CW77 178 aa13.84□□□□□ -0.19
CLN3-204ENST00000357857 H3BMM0 161 aa13.84□□□□□ -0.19
CLN3-204ENST00000357857 TYMSP04818 313 aa13.84□□□□□ -0.19
CLN3-204ENST00000357857 RNASE4P34096 147 aaKnown RBP13.84□□□□□ -0.19
CLN3-204ENST00000357857 RPS20P60866 119 aaKnown RBP13.84□□□□□ -0.19
CLN3-204ENST00000357857 BEAN1Q3B7T3 259 aa13.84□□□□□ -0.19
CLN3-204ENST00000357857 SHISA2Q6UWI4 295 aa13.84□□□□□ -0.19
CLN3-204ENST00000357857 TRAV21A0A0B4J279 112 aa13.84□□□□□ -0.19
CLN3-204ENST00000357857 A8MTW9 85 aa13.84□□□□□ -0.19
CLN3-204ENST00000357857 TSPOP30536 169 aa13.84□□□□□ -0.19
CLN3-204ENST00000357857 KIR3DS1Q14943 382 aa13.84□□□□□ -0.19
CLN3-204ENST00000357857 LINC01559Q495D7 138 aa13.84□□□□□ -0.19
CLN3-204ENST00000357857 SPINK4O60575 86 aa13.83□□□□□ -0.2
CLN3-204ENST00000357857 Q6AWC8 147 aa13.83□□□□□ -0.2
CLN3-204ENST00000357857 AMTNQ6UX39 209 aa13.83□□□□□ -0.2
CLN3-204ENST00000357857 MCRIP2Q9BUT9 160 aaKnown RBP13.83□□□□□ -0.2
CLN3-204ENST00000357857 SRD5A3Q9H8P0 318 aa13.83□□□□□ -0.2
CLN3-204ENST00000357857 C11orf21Q9P2W6 132 aa13.83□□□□□ -0.2
CLN3-204ENST00000357857 KRTAP21-3Q3LHN1 58 aa13.82□□□□□ -0.2
CLN3-204ENST00000357857 Q6ZQT7 251 aa13.82□□□□□ -0.2
CLN3-204ENST00000357857 PGLYRP4Q96LB8 373 aa13.82□□□□□ -0.2
CLN3-204ENST00000357857 CDKN1BP46527 198 aa13.81□□□□□ -0.2
CLN3-204ENST00000357857 FOXA3P55318 350 aaPredicted RBP13.81□□□□□ -0.2
CLN3-204ENST00000357857 SPINK13Q1W4C9 94 aa13.81□□□□□ -0.2
CLN3-204ENST00000357857 WFDC9Q8NEX5 89 aa13.81□□□□□ -0.2
CLN3-204ENST00000357857 FAM110AQ9BQ89 295 aa13.81□□□□□ -0.2
CLN3-204ENST00000357857 IGKV3D-20A0A0C4DH25 116 aa13.81□□□□□ -0.2
CLN3-204ENST00000357857 C7orf71A4D174 169 aa13.81□□□□□ -0.2
CLN3-204ENST00000357857 M0R2Z0 102 aa13.81□□□□□ -0.2
CLN3-204ENST00000357857 CD7P09564 240 aa13.81□□□□□ -0.2
CLN3-204ENST00000357857 MRPL54Q6P161 138 aaKnown RBP13.81□□□□□ -0.2
CLN3-204ENST00000357857 FBN1P35555 2871 aaKnown RBP13.8□□□□□ -0.2
CLN3-204ENST00000357857 RBMY1BA6NDE4 496 aaKnown RBP13.79□□□□□ -0.2
CLN3-204ENST00000357857 RBMY1EA6NEQ0 496 aaKnown RBP13.79□□□□□ -0.2
CLN3-204ENST00000357857 RBMY1DP0C7P1 496 aaKnown RBP13.79□□□□□ -0.2
CLN3-204ENST00000357857 GFI1BQ5VTD9 330 aa13.79□□□□□ -0.2
CLN3-204ENST00000357857 ZNF575Q86XF7 245 aa13.79□□□□□ -0.2
CLN3-204ENST00000357857 STHQ8IWL8 128 aa13.79□□□□□ -0.2
CLN3-204ENST00000357857 CLUHP3Q96NS8 147 aa13.79□□□□□ -0.2
CLN3-204ENST00000357857 NAGKQ9UJ70 344 aa13.79□□□□□ -0.2
CLN3-204ENST00000357857 TRAV12-2A0A075B6T6 113 aa13.78□□□□□ -0.2
CLN3-204ENST00000357857 GRIFINA4D1Z8 144 aa13.78□□□□□ -0.2
CLN3-204ENST00000357857 C1orf196B1AJZ1 125 aa13.78□□□□□ -0.2
CLN3-204ENST00000357857 TRAV12-3A0A0B4J271 114 aa13.78□□□□□ -0.2
CLN3-204ENST00000357857 FRMD6-AS1P0C7T7 363 aa13.78□□□□□ -0.2
CLN3-204ENST00000357857 FXYD7P58549 80 aa13.78□□□□□ -0.2
CLN3-204ENST00000357857 ATP5L2Q7Z4Y8 100 aa13.78□□□□□ -0.2
CLN3-204ENST00000357857 TPPP3Q9BW30 176 aa13.78□□□□□ -0.2
CLN3-204ENST00000357857 C19orf73Q9NVV2 129 aa13.78□□□□□ -0.2
CLN3-204ENST00000357857 TRGC2P03986 189 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms