RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 ESRGQ1W209 222 aa12.29□□□□□ -0.44
HDDC3-201ENST00000330334 VSIG2Q96IQ7 327 aa12.29□□□□□ -0.44
HDDC3-201ENST00000330334 SMIM3Q9BZL3 60 aa12.29□□□□□ -0.44
HDDC3-201ENST00000330334 A0A1W2PPQ1 181 aa12.28□□□□□ -0.44
HDDC3-201ENST00000330334 DIRC3C9JPN6 131 aa12.28□□□□□ -0.44
HDDC3-201ENST00000330334 TTC32Q5I0X7 151 aa12.28□□□□□ -0.44
HDDC3-201ENST00000330334 ST6GAL2Q96JF0 529 aa12.28□□□□□ -0.44
HDDC3-201ENST00000330334 KRTAP17-1Q9BYP8 105 aa12.28□□□□□ -0.44
HDDC3-201ENST00000330334 WFDC1Q9HC57 220 aa12.28□□□□□ -0.44
HDDC3-201ENST00000330334 TP53TG3Q9ULZ0 132 aa12.28□□□□□ -0.44
HDDC3-201ENST00000330334 MRPS16Q9Y3D3 137 aaKnown RBP12.28□□□□□ -0.44
HDDC3-201ENST00000330334 A0A096LPF7 62 aa12.27□□□□□ -0.45
HDDC3-201ENST00000330334 SLAQ13239 276 aa12.27□□□□□ -0.45
HDDC3-201ENST00000330334 ACOT6Q3I5F7 207 aaPredicted RBP12.27□□□□□ -0.45
HDDC3-201ENST00000330334 Q6AWC8 147 aa12.27□□□□□ -0.45
HDDC3-201ENST00000330334 PQLC2Q6ZP29 291 aa12.27□□□□□ -0.45
HDDC3-201ENST00000330334 Q6ZQT7 251 aa12.27□□□□□ -0.45
HDDC3-201ENST00000330334 Q8TAT8 98 aa12.27□□□□□ -0.45
HDDC3-201ENST00000330334 ARPC5LQ9BPX5 153 aa12.27□□□□□ -0.45
HDDC3-201ENST00000330334 OTORQ9NRC9 128 aa12.27□□□□□ -0.45
HDDC3-201ENST00000330334 MUC4Q99102 2169 aa12.26□□□□□ -0.45
HDDC3-201ENST00000330334 TNP2Q05952 138 aa12.26□□□□□ -0.45
HDDC3-201ENST00000330334 FAM74A1Q5RGS3 127 aa12.26□□□□□ -0.45
HDDC3-201ENST00000330334 A0A1W2PPV4 95 aa12.25□□□□□ -0.45
HDDC3-201ENST00000330334 ZNF415Q09FC8 603 aa12.25□□□□□ -0.45
HDDC3-201ENST00000330334 PGPA6NDG6 321 aa12.24□□□□□ -0.45
HDDC3-201ENST00000330334 TDRG1Q3Y452 100 aa12.24□□□□□ -0.45
HDDC3-201ENST00000330334 CMTM2Q8TAZ6 248 aa12.24□□□□□ -0.45
HDDC3-201ENST00000330334 SPXQ9BT56 116 aa12.24□□□□□ -0.45
HDDC3-201ENST00000330334 PRO0255Q9UI72 69 aa12.24□□□□□ -0.45
HDDC3-201ENST00000330334 ALG5Q9Y673 324 aa12.24□□□□□ -0.45
HDDC3-201ENST00000330334 PAX4O43316 350 aa12.23□□□□□ -0.45
HDDC3-201ENST00000330334 PTTG1O95997 202 aa12.23□□□□□ -0.45
HDDC3-201ENST00000330334 IQCF2Q8IXL9 164 aa12.23□□□□□ -0.45
HDDC3-201ENST00000330334 OR2G3Q8NGZ4 309 aa12.23□□□□□ -0.45
HDDC3-201ENST00000330334 RASL10AQ92737 203 aa12.23□□□□□ -0.45
HDDC3-201ENST00000330334 HHLA3Q9XRX5 114 aa12.23□□□□□ -0.45
HDDC3-201ENST00000330334 FHL2Q14192 279 aa12.22□□□□□ -0.45
HDDC3-201ENST00000330334 FAM159AQ6UWV7 190 aa12.22□□□□□ -0.45
HDDC3-201ENST00000330334 OR10G4Q8NGN3 311 aa12.22□□□□□ -0.45
HDDC3-201ENST00000330334 OR10G9Q8NGN4 311 aa12.22□□□□□ -0.45
HDDC3-201ENST00000330334 OR10G7Q8NGN6 311 aa12.22□□□□□ -0.45
HDDC3-201ENST00000330334 HYLS1Q96M11 299 aa12.22□□□□□ -0.45
HDDC3-201ENST00000330334 AQP10Q96PS8 301 aa12.22□□□□□ -0.45
HDDC3-201ENST00000330334 KRTAP1-5Q9BYS1 174 aa12.22□□□□□ -0.45
HDDC3-201ENST00000330334 MRPL16Q9NX20 251 aaKnown RBP12.22□□□□□ -0.45
HDDC3-201ENST00000330334 MDFICQ9P1T7 246 aa12.22□□□□□ -0.45
HDDC3-201ENST00000330334 ICOSQ9Y6W8 199 aa12.22□□□□□ -0.45
HDDC3-201ENST00000330334 PCLOQ9Y6V0 5065 aa12.22□□□□□ -0.45
HDDC3-201ENST00000330334 TRGV11A0A075B6L2 103 aa12.21□□□□□ -0.45
HDDC3-201ENST00000330334 CRYBA4P53673 196 aa12.21□□□□□ -0.45
HDDC3-201ENST00000330334 RAB2AP61019 212 aa12.21□□□□□ -0.45
HDDC3-201ENST00000330334 MUC21Q5SSG8 566 aa12.21□□□□□ -0.45
HDDC3-201ENST00000330334 ZNF575Q86XF7 245 aa12.21□□□□□ -0.45
HDDC3-201ENST00000330334 ASB13Q8WXK3 278 aa12.21□□□□□ -0.45
HDDC3-201ENST00000330334 PSMG3Q9BT73 122 aaPredicted RBP12.21□□□□□ -0.45
HDDC3-201ENST00000330334 SERF2P84101 59 aa12.2□□□□□ -0.46
HDDC3-201ENST00000330334 SUN5Q8TC36 379 aa12.2□□□□□ -0.46
HDDC3-201ENST00000330334 MED28Q9H204 178 aa12.2□□□□□ -0.46
HDDC3-201ENST00000330334 SERTM2A0A1B0GWG4 89 aa12.19□□□□□ -0.46
HDDC3-201ENST00000330334 EIF3GO75821 320 aaKnown RBP eCLIP12.19□□□□□ -0.46
HDDC3-201ENST00000330334 IGHV3-53P01767 116 aa12.19□□□□□ -0.46
HDDC3-201ENST00000330334 MBP02144 154 aa12.19□□□□□ -0.46
HDDC3-201ENST00000330334 STAG3L2P0CL84 134 aa12.19□□□□□ -0.46
HDDC3-201ENST00000330334 STAG3L3P0CL85 134 aa12.19□□□□□ -0.46
HDDC3-201ENST00000330334 MRPL23Q16540 153 aaKnown RBP12.19□□□□□ -0.46
HDDC3-201ENST00000330334 TMEM183BQ1AE95 376 aa12.19□□□□□ -0.46
HDDC3-201ENST00000330334 GOLT1AQ6ZVE7 132 aa12.19□□□□□ -0.46
HDDC3-201ENST00000330334 TMEM183AQ8IXX5 376 aa12.19□□□□□ -0.46
HDDC3-201ENST00000330334 TRAV21A0A0B4J279 112 aa12.18□□□□□ -0.46
HDDC3-201ENST00000330334 C16orf90A8MZG2 172 aa12.18□□□□□ -0.46
HDDC3-201ENST00000330334 SIVA1O15304 175 aa12.18□□□□□ -0.46
HDDC3-201ENST00000330334 CDC34P49427 236 aaPredicted RBP12.18□□□□□ -0.46
HDDC3-201ENST00000330334 LRP1BQ9NZR2 4599 aa12.18□□□□□ -0.46
HDDC3-201ENST00000330334 RYR1P21817 5038 aa12.18□□□□□ -0.46
HDDC3-201ENST00000330334 ARL14EPLP0DKL9 152 aa12.17□□□□□ -0.46
HDDC3-201ENST00000330334 LYPD5Q6UWN5 251 aa12.17□□□□□ -0.46
HDDC3-201ENST00000330334 RAB24Q969Q5 203 aa12.17□□□□□ -0.46
HDDC3-201ENST00000330334 TVP23CQ96ET8 276 aa12.17□□□□□ -0.46
HDDC3-201ENST00000330334 C8orf49Q96NF6 230 aa12.17□□□□□ -0.46
HDDC3-201ENST00000330334 TREM1Q9NP99 234 aa12.17□□□□□ -0.46
HDDC3-201ENST00000330334 TRGV4A0A0C4DH28 118 aa12.16□□□□□ -0.46
HDDC3-201ENST00000330334 M0R2P5 195 aa12.16□□□□□ -0.46
HDDC3-201ENST00000330334 HMGB3O15347 200 aaKnown RBP12.16□□□□□ -0.46
HDDC3-201ENST00000330334 CDK2AP2O75956 126 aa12.16□□□□□ -0.46
HDDC3-201ENST00000330334 GIPP09681 153 aaPredicted RBP12.16□□□□□ -0.46
HDDC3-201ENST00000330334 ATP6V0CP27449 155 aa12.16□□□□□ -0.46
HDDC3-201ENST00000330334 NEGR1Q7Z3B1 354 aa12.16□□□□□ -0.46
HDDC3-201ENST00000330334 C5orf17Q8NAS9 161 aa12.16□□□□□ -0.46
HDDC3-201ENST00000330334 HSD17B11Q8NBQ5 300 aa12.16□□□□□ -0.46
HDDC3-201ENST00000330334 KCNS1Q96KK3 526 aa12.16□□□□□ -0.46
HDDC3-201ENST00000330334 RPH3ALQ9UNE2 315 aa12.16□□□□□ -0.46
HDDC3-201ENST00000330334 TNFSF18Q9UNG2 199 aa12.16□□□□□ -0.46
HDDC3-201ENST00000330334 TRAV8-1A0A0A6YYK1 113 aa12.15□□□□□ -0.46
HDDC3-201ENST00000330334 IGHV3-16A0A0C4DH30 117 aa12.15□□□□□ -0.46
HDDC3-201ENST00000330334 NXPH4O95158 308 aa12.15□□□□□ -0.46
HDDC3-201ENST00000330334 ORM1P02763 201 aa12.15□□□□□ -0.46
HDDC3-201ENST00000330334 ZNF479Q96JC4 524 aa12.15□□□□□ -0.46
HDDC3-201ENST00000330334 HSPG2P98160 4391 aa12.15□□□□□ -0.46
HDDC3-201ENST00000330334 TRAV4A0A0B4J268 109 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms