RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 NXT2Q9NPJ8 142 aaKnown RBP16.93■□□□□ 0.3
SHMT1-201ENST00000316694 C11orf21Q9P2W6 132 aa16.93■□□□□ 0.3
SHMT1-201ENST00000316694 RBAKDNA6NC62 111 aa16.92■□□□□ 0.3
SHMT1-201ENST00000316694 KIR3DS1Q14943 382 aa16.92■□□□□ 0.3
SHMT1-201ENST00000316694 NCOR2Q9Y618 2525 aa16.91■□□□□ 0.3
SHMT1-201ENST00000316694 H3BUT2 72 aa16.91■□□□□ 0.3
SHMT1-201ENST00000316694 TRGV3P03979 118 aa16.91■□□□□ 0.3
SHMT1-201ENST00000316694 OR4X2Q8NGF9 303 aa16.91■□□□□ 0.3
SHMT1-201ENST00000316694 RAB37Q96AX2 223 aa16.91■□□□□ 0.3
SHMT1-201ENST00000316694 AJUBAQ96IF1 538 aa16.91■□□□□ 0.3
SHMT1-201ENST00000316694 CHD8Q9HCK8 2581 aa16.91■□□□□ 0.3
SHMT1-201ENST00000316694 C9orf118A6NHY6 69 aa16.91■□□□□ 0.3
SHMT1-201ENST00000316694 H3BRM9 83 aa16.91■□□□□ 0.3
SHMT1-201ENST00000316694 SIVA1O15304 175 aa16.91■□□□□ 0.3
SHMT1-201ENST00000316694 UBE2E1P51965 193 aa16.91■□□□□ 0.3
SHMT1-201ENST00000316694 TMEM78Q5T7P6 136 aa16.91■□□□□ 0.3
SHMT1-201ENST00000316694 NPFFR1Q9GZQ6 430 aa16.91■□□□□ 0.3
SHMT1-201ENST00000316694 UCNP55089 124 aa16.9■□□□□ 0.3
SHMT1-201ENST00000316694 TM4SF20Q53R12 229 aa16.9■□□□□ 0.3
SHMT1-201ENST00000316694 TMEM158Q8WZ71 300 aa16.9■□□□□ 0.3
SHMT1-201ENST00000316694 JMJD8Q96S16 334 aa16.9■□□□□ 0.3
SHMT1-201ENST00000316694 COL25A1Q9BXS0 654 aaPredicted RBP16.9■□□□□ 0.3
SHMT1-201ENST00000316694 ODF1Q14990 250 aa16.9■□□□□ 0.3
SHMT1-201ENST00000316694 TRAV8-2A0A0B4J237 113 aa16.89■□□□□ 0.29
SHMT1-201ENST00000316694 LINC01546A6NGU7 62 aa16.89■□□□□ 0.29
SHMT1-201ENST00000316694 METTL26Q96S19 204 aa16.89■□□□□ 0.29
SHMT1-201ENST00000316694 VPS25Q9BRG1 176 aa16.89■□□□□ 0.29
SHMT1-201ENST00000316694 UFC1Q9Y3C8 167 aa16.89■□□□□ 0.29
SHMT1-201ENST00000316694 IGKV2D-26A0A0A0MRZ7 120 aa16.89■□□□□ 0.29
SHMT1-201ENST00000316694 Q6ZQT7 251 aa16.89■□□□□ 0.29
SHMT1-201ENST00000316694 C8orf86Q6ZUL3 223 aa16.89■□□□□ 0.29
SHMT1-201ENST00000316694 EEF1AKMT3Q96AZ1 226 aa16.89■□□□□ 0.29
SHMT1-201ENST00000316694 TTTY13Q9BZ97 58 aa16.89■□□□□ 0.29
SHMT1-201ENST00000316694 TRAV26-2A0A0B4J265 109 aa16.88■□□□□ 0.29
SHMT1-201ENST00000316694 FOXC2Q99958 501 aa16.88■□□□□ 0.29
SHMT1-201ENST00000316694 VPS13CQ709C8 3753 aa16.88■□□□□ 0.29
SHMT1-201ENST00000316694 A0A0G2JLM5 398 aa16.87■□□□□ 0.29
SHMT1-201ENST00000316694 OR2K2Q8NGT1 345 aa16.87■□□□□ 0.29
SHMT1-201ENST00000316694 UBTD1Q9HAC8 227 aa16.87■□□□□ 0.29
SHMT1-201ENST00000316694 GTF2H5Q6ZYL4 71 aa16.87■□□□□ 0.29
SHMT1-201ENST00000316694 SMIM15Q7Z3B0 74 aa16.87■□□□□ 0.29
SHMT1-201ENST00000316694 Q8N8P6 123 aa16.87■□□□□ 0.29
SHMT1-201ENST00000316694 HHLA3Q9XRX5 114 aa16.87■□□□□ 0.29
SHMT1-201ENST00000316694 CELSR1Q9NYQ6 3014 aa16.86■□□□□ 0.29
SHMT1-201ENST00000316694 IGKCP01834 107 aa16.86■□□□□ 0.29
SHMT1-201ENST00000316694 ZMAT4Q9H898 229 aa16.85■□□□□ 0.29
SHMT1-201ENST00000316694 IGHV7-4-1A0A0J9YVY3 117 aa16.85■□□□□ 0.29
SHMT1-201ENST00000316694 UFSP1Q6NVU6 142 aa16.85■□□□□ 0.29
SHMT1-201ENST00000316694 GTSCR1Q86UQ5 136 aa16.85■□□□□ 0.29
SHMT1-201ENST00000316694 TMEM219Q86XT9 240 aa16.85■□□□□ 0.29
SHMT1-201ENST00000316694 LINC00527Q9UJ94 153 aa16.85■□□□□ 0.29
SHMT1-201ENST00000316694 TRBV7-1A0A0A6YYK4 115 aa16.84■□□□□ 0.29
SHMT1-201ENST00000316694 CENPVL3A0A0U1RRI6 287 aa16.84■□□□□ 0.29
SHMT1-201ENST00000316694 SMIM17P0DL12 118 aa16.84■□□□□ 0.29
SHMT1-201ENST00000316694 SPANXN1Q5VSR9 72 aa16.84■□□□□ 0.29
SHMT1-201ENST00000316694 IGLV2-18A0A075B6J9 118 aa16.84■□□□□ 0.29
SHMT1-201ENST00000316694 GCSHP23434 173 aa16.84■□□□□ 0.29
SHMT1-201ENST00000316694 LY6DQ14210 128 aa16.83■□□□□ 0.28
SHMT1-201ENST00000316694 KLK9Q2XQG4 91 aa16.83■□□□□ 0.28
SHMT1-201ENST00000316694 C16orf92Q96LL3 132 aa16.83■□□□□ 0.28
SHMT1-201ENST00000316694 BPESC1Q9GZL8 116 aa16.83■□□□□ 0.28
SHMT1-201ENST00000316694 KLK9Q9UKQ9 250 aa16.83■□□□□ 0.28
SHMT1-201ENST00000316694 TMEM8BA6NDV4 472 aa16.82■□□□□ 0.28
SHMT1-201ENST00000316694 J3KRW8 73 aa16.82■□□□□ 0.28
SHMT1-201ENST00000316694 ATP5G2Q06055 141 aa16.82■□□□□ 0.28
SHMT1-201ENST00000316694 NPFFO15130 113 aa16.82■□□□□ 0.28
SHMT1-201ENST00000316694 DPM2O94777 84 aa16.82■□□□□ 0.28
SHMT1-201ENST00000316694 ZC2HC1BQ5TFG8 222 aa16.82■□□□□ 0.28
SHMT1-201ENST00000316694 NRACQ8N912 160 aa16.82■□□□□ 0.28
SHMT1-201ENST00000316694 PIFOQ8TCI5 191 aa16.82■□□□□ 0.28
SHMT1-201ENST00000316694 TMEM160Q9NX00 188 aa16.82■□□□□ 0.28
SHMT1-201ENST00000316694 H3BVH4 76 aa16.81■□□□□ 0.28
SHMT1-201ENST00000316694 K7EP34 96 aa16.81■□□□□ 0.28
SHMT1-201ENST00000316694 K7ERU9 68 aa16.81■□□□□ 0.28
SHMT1-201ENST00000316694 C9orf47Q6ZRZ4 202 aa16.81■□□□□ 0.28
SHMT1-201ENST00000316694 C5orf56Q8N8D9 126 aa16.81■□□□□ 0.28
SHMT1-201ENST00000316694 IGHV3OR16-10A0A075B7F0 116 aa16.81■□□□□ 0.28
SHMT1-201ENST00000316694 ATP5LO75964 103 aa16.81■□□□□ 0.28
SHMT1-201ENST00000316694 LAGE3Q14657 143 aa16.81■□□□□ 0.28
SHMT1-201ENST00000316694 MRPL53Q96EL3 112 aaKnown RBP16.8■□□□□ 0.28
SHMT1-201ENST00000316694 EFNA4P52798 201 aa16.8■□□□□ 0.28
SHMT1-201ENST00000316694 LMO4P61968 165 aa16.8■□□□□ 0.28
SHMT1-201ENST00000316694 MYOZ3Q8TDC0 251 aa16.8■□□□□ 0.28
SHMT1-201ENST00000316694 CHAC1Q9BUX1 264 aa16.8■□□□□ 0.28
SHMT1-201ENST00000316694 TRAV40A0A0B4J280 105 aa16.79■□□□□ 0.28
SHMT1-201ENST00000316694 SAP30O75446 220 aa16.79■□□□□ 0.28
SHMT1-201ENST00000316694 FXYD2P54710 66 aa16.79■□□□□ 0.28
SHMT1-201ENST00000316694 PRR9Q5T870 116 aa16.79■□□□□ 0.28
SHMT1-201ENST00000316694 HIF1ANQ9NWT6 349 aa16.79■□□□□ 0.28
SHMT1-201ENST00000316694 MRPL35Q9NZE8 188 aaKnown RBP16.79■□□□□ 0.28
SHMT1-201ENST00000316694 COL12A1Q99715 3063 aa16.79■□□□□ 0.28
SHMT1-201ENST00000316694 A0A1W2PPM0 123 aa16.79■□□□□ 0.28
SHMT1-201ENST00000316694 IGF1P05019 195 aa16.79■□□□□ 0.28
SHMT1-201ENST00000316694 SMPXQ9UHP9 88 aa16.79■□□□□ 0.28
SHMT1-201ENST00000316694 U3KQE9 123 aa16.79■□□□□ 0.28
SHMT1-201ENST00000316694 ITPR1Q14643 2758 aa16.79■□□□□ 0.28
SHMT1-201ENST00000316694 PSMG4Q5JS54 123 aa16.78■□□□□ 0.28
SHMT1-201ENST00000316694 SPTAN1Q13813 2472 aaKnown RBP16.78■□□□□ 0.28
SHMT1-201ENST00000316694 SPCS1Q9Y6A9 102 aa16.78■□□□□ 0.28
SHMT1-201ENST00000316694 TRBV25-1A0A075B6N4 114 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms