RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 ZNF114Q8NC26 417 aa12.63□□□□□ -0.39
USP42-201ENST00000306177 PTPRQQ9UMZ3 2332 aa12.63□□□□□ -0.39
USP42-201ENST00000306177 IGHV7-4-1A0A0J9YVY3 117 aa12.63□□□□□ -0.39
USP42-201ENST00000306177 I3L3M4 83 aa12.63□□□□□ -0.39
USP42-201ENST00000306177 KIR3DS1Q14943 382 aa12.63□□□□□ -0.39
USP42-201ENST00000306177 ZNF491Q8N8L2 437 aa12.63□□□□□ -0.39
USP42-201ENST00000306177 SPRY4Q9C004 299 aa12.63□□□□□ -0.39
USP42-201ENST00000306177 CEP350Q5VT06 3117 aa12.63□□□□□ -0.39
USP42-201ENST00000306177 STPG4Q8N801 248 aa12.63□□□□□ -0.39
USP42-201ENST00000306177 IGLC7A0M8Q6 106 aa12.63□□□□□ -0.39
USP42-201ENST00000306177 NDUFS7O75251 213 aa12.62□□□□□ -0.39
USP42-201ENST00000306177 SLAQ13239 276 aa12.62□□□□□ -0.39
USP42-201ENST00000306177 ZC2HC1AQ96GY0 325 aa12.62□□□□□ -0.39
USP42-201ENST00000306177 GAGE12JA6NER3 117 aa12.62□□□□□ -0.39
USP42-201ENST00000306177 SSBP2P81877 361 aaPredicted RBP12.62□□□□□ -0.39
USP42-201ENST00000306177 GAGE1Q13065 139 aa12.62□□□□□ -0.39
USP42-201ENST00000306177 GAGE4Q13068 117 aa12.62□□□□□ -0.39
USP42-201ENST00000306177 GAGE5Q13069 117 aa12.62□□□□□ -0.39
USP42-201ENST00000306177 DLX4Q92988 240 aaPredicted RBP12.62□□□□□ -0.39
USP42-201ENST00000306177 SPG11Q96JI7 2443 aa12.62□□□□□ -0.39
USP42-201ENST00000306177 DLEU1O43261 78 aa12.61□□□□□ -0.39
USP42-201ENST00000306177 PRSS57Q6UWY2 283 aa12.61□□□□□ -0.39
USP42-201ENST00000306177 POLR3KQ9Y2Y1 108 aaPredicted RBP12.61□□□□□ -0.39
USP42-201ENST00000306177 CUL9Q8IWT3 2517 aa12.61□□□□□ -0.39
USP42-201ENST00000306177 SDHAF1A6NFY7 115 aa12.61□□□□□ -0.39
USP42-201ENST00000306177 AZU1P20160 251 aa12.61□□□□□ -0.39
USP42-201ENST00000306177 OR11H6Q8NGC7 330 aa12.61□□□□□ -0.39
USP42-201ENST00000306177 ANAPC13Q9BS18 74 aa12.61□□□□□ -0.39
USP42-201ENST00000306177 TRAV12-2A0A075B6T6 113 aa12.61□□□□□ -0.39
USP42-201ENST00000306177 SIGMAR1Q99720 223 aa12.61□□□□□ -0.39
USP42-201ENST00000306177 CD5LO43866 347 aa12.6□□□□□ -0.39
USP42-201ENST00000306177 VWC2Q2TAL6 325 aa12.6□□□□□ -0.39
USP42-201ENST00000306177 SPRNQ5BIV9 151 aa12.6□□□□□ -0.39
USP42-201ENST00000306177 C20orf144Q9BQM9 153 aa12.6□□□□□ -0.39
USP42-201ENST00000306177 IGHV3-16A0A0C4DH30 117 aa12.6□□□□□ -0.39
USP42-201ENST00000306177 TRBV25-1A0A075B6N4 114 aa12.6□□□□□ -0.39
USP42-201ENST00000306177 PMVKQ15126 192 aa12.6□□□□□ -0.39
USP42-201ENST00000306177 OVOL2Q9BRP0 275 aa12.59□□□□□ -0.39
USP42-201ENST00000306177 DAD1P61803 113 aa12.59□□□□□ -0.39
USP42-201ENST00000306177 CFHR3Q02985 330 aa12.59□□□□□ -0.39
USP42-201ENST00000306177 PSCAO43653 123 aa12.59□□□□□ -0.39
USP42-201ENST00000306177 NEGR1Q7Z3B1 354 aa12.59□□□□□ -0.39
USP42-201ENST00000306177 TRAV26-2A0A0B4J265 109 aa12.58□□□□□ -0.39
USP42-201ENST00000306177 LTAP01374 205 aa12.58□□□□□ -0.39
USP42-201ENST00000306177 C2orf82Q6UX34 121 aa12.58□□□□□ -0.4
USP42-201ENST00000306177 NOTCH2Q04721 2471 aa12.57□□□□□ -0.4
USP42-201ENST00000306177 IGHV1-24A0A0C4DH33 117 aa12.57□□□□□ -0.4
USP42-201ENST00000306177 LGALS1P09382 135 aaKnown RBP12.57□□□□□ -0.4
USP42-201ENST00000306177 CITED2Q99967 270 aaPredicted RBP12.57□□□□□ -0.4
USP42-201ENST00000306177 VPREB3Q9UKI3 123 aa12.57□□□□□ -0.4
USP42-201ENST00000306177 F5H768 121 aa12.57□□□□□ -0.4
USP42-201ENST00000306177 DEFB112Q30KQ8 113 aa12.57□□□□□ -0.4
USP42-201ENST00000306177 ATP6V0BQ99437 205 aa12.57□□□□□ -0.4
USP42-201ENST00000306177 LYPD6BQ8NI32 183 aa12.57□□□□□ -0.4
USP42-201ENST00000306177 SIGLEC8Q9NYZ4 499 aa12.56□□□□□ -0.4
USP42-201ENST00000306177 LAMTOR3Q9UHA4 124 aa12.56□□□□□ -0.4
USP42-201ENST00000306177 CACNA1AO00555 2505 aa12.56□□□□□ -0.4
USP42-201ENST00000306177 GAGE12BA1L429 117 aa12.56□□□□□ -0.4
USP42-201ENST00000306177 GAGE7O76087 117 aa12.56□□□□□ -0.4
USP42-201ENST00000306177 GAGE12FP0CL80 117 aa12.56□□□□□ -0.4
USP42-201ENST00000306177 GAGE12GP0CL81 117 aa12.56□□□□□ -0.4
USP42-201ENST00000306177 GAGE12IP0CL82 117 aa12.56□□□□□ -0.4
USP42-201ENST00000306177 LYPD6Q86Y78 171 aa12.56□□□□□ -0.4
USP42-201ENST00000306177 ANKHD1Q8IWZ3 2542 aaKnown RBP12.56□□□□□ -0.4
USP42-201ENST00000306177 CENPVL3A0A0U1RRI6 287 aa12.56□□□□□ -0.4
USP42-201ENST00000306177 UBE2V1Q13404 147 aa12.56□□□□□ -0.4
USP42-201ENST00000306177 ZNRF2Q8NHG8 242 aa12.56□□□□□ -0.4
USP42-201ENST00000306177 COL4A3Q01955 1670 aa12.56□□□□□ -0.4
USP42-201ENST00000306177 PLCE1Q9P212 2302 aa12.56□□□□□ -0.4
USP42-201ENST00000306177 APOC4P55056 127 aa12.55□□□□□ -0.4
USP42-201ENST00000306177 SRSF2Q01130 221 aaKnown RBP12.55□□□□□ -0.4
USP42-201ENST00000306177 C17orf77Q96MU5 243 aa12.55□□□□□ -0.4
USP42-201ENST00000306177 SMIM2Q9BVW6 85 aa12.55□□□□□ -0.4
USP42-201ENST00000306177 NPYP01303 97 aa12.55□□□□□ -0.4
USP42-201ENST00000306177 IGHV4-59P01825 116 aa12.55□□□□□ -0.4
USP42-201ENST00000306177 Q6ZWC4 215 aa12.55□□□□□ -0.4
USP42-201ENST00000306177 PYGO2Q9BRQ0 406 aa12.55□□□□□ -0.4
USP42-201ENST00000306177 LGALS9BQ3B8N2 356 aa12.55□□□□□ -0.4
USP42-201ENST00000306177 LGALS9CQ6DKI2 356 aa12.55□□□□□ -0.4
USP42-201ENST00000306177 NPBQ8NG41 125 aa12.55□□□□□ -0.4
USP42-201ENST00000306177 MRPL53Q96EL3 112 aaKnown RBP12.55□□□□□ -0.4
USP42-201ENST00000306177 SEM1Q6ZVN7 128 aa12.54□□□□□ -0.4
USP42-201ENST00000306177 K7EN84 100 aa12.54□□□□□ -0.4
USP42-201ENST00000306177 TMEM243Q9BU79 118 aa12.54□□□□□ -0.4
USP42-201ENST00000306177 FOXI2Q6ZQN5 318 aa12.54□□□□□ -0.4
USP42-201ENST00000306177 ZNF625Q96I27 306 aaPredicted RBP12.54□□□□□ -0.4
USP42-201ENST00000306177 TRAV8-3A0A0A6YYJ7 113 aa12.53□□□□□ -0.4
USP42-201ENST00000306177 DYNAPQ8N1N2 210 aa12.53□□□□□ -0.4
USP42-201ENST00000306177 IGHV4-61A0A0C4DH41 118 aa12.53□□□□□ -0.4
USP42-201ENST00000306177 RBAKDNA6NC62 111 aa12.53□□□□□ -0.4
USP42-201ENST00000306177 C20orf78Q9BR46 151 aa12.53□□□□□ -0.4
USP42-201ENST00000306177 EREGO14944 169 aa12.52□□□□□ -0.4
USP42-201ENST00000306177 HLA-DMBP28068 263 aa12.52□□□□□ -0.4
USP42-201ENST00000306177 ASPHD1Q5U4P2 390 aa12.52□□□□□ -0.4
USP42-201ENST00000306177 FREM1Q5H8C1 2179 aa12.52□□□□□ -0.4
USP42-201ENST00000306177 IGHV3-38A0A0C4DH36 116 aa12.52□□□□□ -0.41
USP42-201ENST00000306177 HLA-DRB4P13762 266 aa12.52□□□□□ -0.41
USP42-201ENST00000306177 AGPAT4-IT1Q9H0P7 198 aa12.52□□□□□ -0.41
USP42-201ENST00000306177 LENEPQ9Y5L5 61 aa12.52□□□□□ -0.41
USP42-201ENST00000306177 HLA-DRB4X5D2U9 266 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms