RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 C1QCP02747 245 aa11.24□□□□□ -0.61
CCDC88A-201ENST00000263630 LYNX1P0DP58 116 aa11.24□□□□□ -0.61
CCDC88A-201ENST00000263630 NTF4P34130 210 aa11.24□□□□□ -0.61
CCDC88A-201ENST00000263630 ZCCHC24Q8N2G6 241 aaKnown RBP11.24□□□□□ -0.61
CCDC88A-201ENST00000263630 SP7Q8TDD2 431 aaPredicted RBP11.24□□□□□ -0.61
CCDC88A-201ENST00000263630 COX7B2Q8TF08 81 aa11.24□□□□□ -0.61
CCDC88A-201ENST00000263630 FAM236AA0A1B0GUQ0 79 aa11.24□□□□□ -0.61
CCDC88A-201ENST00000263630 FAM236BA0A1B0GV22 79 aa11.24□□□□□ -0.61
CCDC88A-201ENST00000263630 SAA4P35542 130 aa11.24□□□□□ -0.61
CCDC88A-201ENST00000263630 MED13LQ71F56 2210 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 CFC1BP0CG36 223 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 CFC1P0CG37 223 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 DYNAPQ8N1N2 210 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 NTN5Q8WTR8 489 aaPredicted RBP11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 HCFC1P51610 2035 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 OVOL3O00110 214 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 CLPSL2Q6UWE3 100 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 C8orf49Q96NF6 230 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 LINC00114Q6XXX2 140 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 LYZL4Q96KX0 146 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 KLK9Q9UKQ9 250 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 ADAMTSL1Q8N6G6 1762 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 C10orf55Q5SWW7 151 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 IGKV1OR2-108A0A075B7D4 117 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 BTCP35070 178 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 ZNF493Q6ZR52 646 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 IGKV1-39P01597 117 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 IGKV1D-39P04432 117 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 PDE6GP18545 87 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 C12orf74Q32Q52 190 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 V9GYY9 64 aa11.23□□□□□ -0.61
CCDC88A-201ENST00000263630 YPEL3P61236 119 aaPredicted RBP11.22□□□□□ -0.61
CCDC88A-201ENST00000263630 BRD3OSQ6XYD6 125 aa11.22□□□□□ -0.61
CCDC88A-201ENST00000263630 C17orf77Q96MU5 243 aa11.22□□□□□ -0.61
CCDC88A-201ENST00000263630 U3KQE9 123 aa11.22□□□□□ -0.61
CCDC88A-201ENST00000263630 MRPL35Q9NZE8 188 aaKnown RBP11.22□□□□□ -0.61
CCDC88A-201ENST00000263630 H0Y9J4 135 aa11.21□□□□□ -0.61
CCDC88A-201ENST00000263630 TMEM256-PLSCR3K7ERE1 68 aa11.21□□□□□ -0.61
CCDC88A-201ENST00000263630 PRRC2AP48634 2157 aaKnown RBP11.21□□□□□ -0.61
CCDC88A-201ENST00000263630 TRBV6-6A0A0A6YYG2 114 aa11.21□□□□□ -0.61
CCDC88A-201ENST00000263630 ZFP36L1Q07352 338 aaKnown RBP11.21□□□□□ -0.61
CCDC88A-201ENST00000263630 C8orf86Q6ZUL3 223 aa11.21□□□□□ -0.61
CCDC88A-201ENST00000263630 MRPL53Q96EL3 112 aaKnown RBP11.21□□□□□ -0.61
CCDC88A-201ENST00000263630 FRMPD3Q5JV73 1810 aa11.21□□□□□ -0.61
CCDC88A-201ENST00000263630 NDUFS6O75380 124 aaKnown RBP11.21□□□□□ -0.61
CCDC88A-201ENST00000263630 LTAP01374 205 aa11.21□□□□□ -0.61
CCDC88A-201ENST00000263630 LAIR2Q6ISS4 152 aa11.21□□□□□ -0.61
CCDC88A-201ENST00000263630 SMIM27A0A1W2PRY6 76 aa11.21□□□□□ -0.62
CCDC88A-201ENST00000263630 IGLV3-32A0A0A0MS00 114 aa11.21□□□□□ -0.62
CCDC88A-201ENST00000263630 FOXE3Q13461 319 aa11.21□□□□□ -0.62
CCDC88A-201ENST00000263630 PLXNA2O75051 1894 aa11.21□□□□□ -0.62
CCDC88A-201ENST00000263630 TMEM213A2RRL7 107 aa11.21□□□□□ -0.62
CCDC88A-201ENST00000263630 FOXF2Q12947 444 aa11.2□□□□□ -0.62
CCDC88A-201ENST00000263630 ZNF837Q96EG3 531 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-201ENST00000263630 SPRR3Q9UBC9 169 aa11.2□□□□□ -0.62
CCDC88A-201ENST00000263630 NDUFA4O00483 81 aa11.2□□□□□ -0.62
CCDC88A-201ENST00000263630 Q9H8V8 135 aa11.2□□□□□ -0.62
CCDC88A-201ENST00000263630 COLQQ9Y215 455 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-201ENST00000263630 IGHV3-38A0A0C4DH36 116 aa11.2□□□□□ -0.62
CCDC88A-201ENST00000263630 C4orf51C9J302 202 aa11.2□□□□□ -0.62
CCDC88A-201ENST00000263630 KLF2Q9Y5W3 355 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-201ENST00000263630 K7ERJ3 54 aa11.2□□□□□ -0.62
CCDC88A-201ENST00000263630 IGHV4-4A0A075B6R2 117 aa11.2□□□□□ -0.62
CCDC88A-201ENST00000263630 TCF20Q9UGU0 1960 aaKnown RBP11.2□□□□□ -0.62
CCDC88A-201ENST00000263630 MBD3L4A6NDZ8 208 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-201ENST00000263630 MBD3L3A6NE82 208 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-201ENST00000263630 MBD3L5A6NJ08 208 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-201ENST00000263630 Q6ZWC4 215 aa11.2□□□□□ -0.62
CCDC88A-201ENST00000263630 MBD3L2Q8NHZ7 208 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-201ENST00000263630 IGKV1-9A0A0C4DH69 117 aa11.19□□□□□ -0.62
CCDC88A-201ENST00000263630 FAM110DQ8TAY7 271 aaPredicted RBP11.19□□□□□ -0.62
CCDC88A-201ENST00000263630 CAMK2N2Q96S95 79 aa11.19□□□□□ -0.62
CCDC88A-201ENST00000263630 USP17L23D6RBM5 183 aa11.19□□□□□ -0.62
CCDC88A-201ENST00000263630 EFNA2O43921 213 aa11.19□□□□□ -0.62
CCDC88A-201ENST00000263630 SIGLEC8Q9NYZ4 499 aa11.19□□□□□ -0.62
CCDC88A-201ENST00000263630 TRBV12-3P01733 135 aa11.19□□□□□ -0.62
CCDC88A-201ENST00000263630 LHFPL1Q86WI0 220 aa11.19□□□□□ -0.62
CCDC88A-201ENST00000263630 RNF152Q8N8N0 203 aa11.19□□□□□ -0.62
CCDC88A-201ENST00000263630 PLXNB3Q9ULL4 1909 aa11.19□□□□□ -0.62
CCDC88A-201ENST00000263630 IGFL4Q6B9Z1 124 aa11.19□□□□□ -0.62
CCDC88A-201ENST00000263630 DAZ2Q13117 558 aaKnown RBP11.19□□□□□ -0.62
CCDC88A-201ENST00000263630 DAZ4Q86SG3 579 aaKnown RBP11.19□□□□□ -0.62
CCDC88A-201ENST00000263630 DAZ3Q9NR90 486 aaKnown RBP11.19□□□□□ -0.62
CCDC88A-201ENST00000263630 C15orf62A8K5M9 175 aa11.18□□□□□ -0.62
CCDC88A-201ENST00000263630 ICOSQ9Y6W8 199 aa11.18□□□□□ -0.62
CCDC88A-201ENST00000263630 FAM240AA0A1B0GVK7 77 aa11.18□□□□□ -0.62
CCDC88A-201ENST00000263630 C5orf63A6NC05 138 aa11.18□□□□□ -0.62
CCDC88A-201ENST00000263630 CCL18P55774 89 aa11.18□□□□□ -0.62
CCDC88A-201ENST00000263630 TRAV3A0A0B4J244 114 aa11.18□□□□□ -0.62
CCDC88A-201ENST00000263630 TRAV4A0A0B4J268 109 aa11.18□□□□□ -0.62
CCDC88A-201ENST00000263630 COX7A2LO14548 114 aa11.18□□□□□ -0.62
CCDC88A-201ENST00000263630 SHISA3A0PJX4 238 aa11.18□□□□□ -0.62
CCDC88A-201ENST00000263630 RNF183Q96D59 192 aa11.18□□□□□ -0.62
CCDC88A-201ENST00000263630 ANAPC1Q9H1A4 1944 aa11.17□□□□□ -0.62
CCDC88A-201ENST00000263630 TMEM14CQ9P0S9 112 aa11.17□□□□□ -0.62
CCDC88A-201ENST00000263630 IGKV3D-7A0A0C4DH55 119 aa11.17□□□□□ -0.62
CCDC88A-201ENST00000263630 UBE2E1P51965 193 aa11.17□□□□□ -0.62
CCDC88A-201ENST00000263630 Q9HAA7 133 aa11.17□□□□□ -0.62
CCDC88A-201ENST00000263630 TRAV26-2A0A0B4J265 109 aa11.17□□□□□ -0.62
CCDC88A-201ENST00000263630 ANKRD39Q53RE8 183 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms