RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 SPOCK3Q9BQ16 436 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 TNFRSF18Q9Y5U5 241 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 H7C1H1 209 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 EGR2P11161 476 aaPredicted RBP3.64□□□□□ -1.83
VPS13C-201ENST00000249837 MINOS1Q5TGZ0 78 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 RUSC1-AS1Q66K80 236 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 LINC00322Q6ZN03 302 aaPredicted RBP3.64□□□□□ -1.83
VPS13C-201ENST00000249837 MINOS1-NBL1R4GNA1 71 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 IGKV1D-37A0A075B6S9 117 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 TRAV12-3A0A0B4J271 114 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 ZNF747Q9BV97 191 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 RNF114Q9Y508 228 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 NPYP01303 97 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 GP9P14770 177 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 SLC25A16P16260 332 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 DUX3Q96PT4 197 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 AGPAT4-IT1Q9H0P7 198 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 TMEM14CQ9P0S9 112 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 PAX1P15863 534 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 CR1LQ2VPA4 569 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 NPIPB6E9PJ23 425 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 K7EMI3 77 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 IGHV4-39P01824 125 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 ESDP10768 282 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 LINC01587Q99440 93 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 PCSK5Q92824 1860 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 PDE6HQ13956 83 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 ZNF491Q8N8L2 437 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 C19orf54Q5BKX5 351 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 ZNF462Q96JM2 2506 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 K7EIM0 57 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 SMPXQ9UHP9 88 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 H3BRN7 92 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 LTAP01374 205 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 LOXL1Q08397 574 aaPredicted RBP3.63□□□□□ -1.83
VPS13C-201ENST00000249837 TTC32Q5I0X7 151 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 TSSC4Q9Y5U2 329 aaPredicted RBP3.63□□□□□ -1.83
VPS13C-201ENST00000249837 DEFB125Q8N687 156 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 TRAV40A0A0B4J280 105 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 IGKV3D-20A0A0C4DH25 116 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 IGHV2-70DA0A0C4DH43 119 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 LGALS9BQ3B8N2 356 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 LGALS9CQ6DKI2 356 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 RAX2Q96IS3 184 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 OOSP1A8MZH6 123 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 COX6CP09669 75 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 PAX2Q02962 417 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 FOXE3Q13461 319 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 MOB4Q9Y3A3 225 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 F8P00451 2351 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 IGLV2-23P01705 113 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 NPC2P61916 151 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 Q8N8P6 123 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 VCYO14598 125 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 MBD6Q96DN6 1003 aa3.63□□□□□ -1.83
VPS13C-201ENST00000249837 TNRC6BQ9UPQ9 1833 aaKnown RBP3.63□□□□□ -1.83
VPS13C-201ENST00000249837 IGHV3-73A0A0B4J1V6 119 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 I3L2K1 104 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 AMTNQ6UX39 209 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 RPL39LQ96EH5 51 aaKnown RBP3.62□□□□□ -1.83
VPS13C-201ENST00000249837 MRAP2Q96G30 205 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 LINC00477Q96M19 166 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 TTTY13Q9BZ97 58 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 LINC01545Q5VT33 79 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 H3BUX3 64 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 PAPPA-AS1Q5QFB9 102 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 ZNF876PQ49A33 203 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 KLF12Q9Y4X4 402 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 C2orf70A6NJV1 201 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 SHISA9B4DS77 424 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 K7EP13 123 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 K7EP34 96 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 MEIG1Q5JSS6 88 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 PCNTO95613 3336 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 IGFL3Q6UXB1 125 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 A0A1W2PPM0 123 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 LINC01549A6NIU2 74 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 COX6B1P14854 86 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 PLNP26678 52 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 C1orf122Q6ZSJ8 110 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 ERG28Q9UKR5 140 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 TRBV7-1A0A0A6YYK4 115 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 PIP4P2Q8N4L2 257 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 DPH3P1Q9H4G8 78 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 A0A1B0GXF2 115 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 ATP6V0E1O15342 81 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 SAP30O75446 220 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 TEX22C9J3V5 150 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 IGFL2Q6UWQ7 119 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 C8orf86Q6ZUL3 223 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 C22orf34Q6ZV56 151 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 ITLN2Q8WWU7 325 aaPredicted RBP3.62□□□□□ -1.83
VPS13C-201ENST00000249837 TMEM190Q8WZ59 177 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 RHPN1-AS1Q9BWJ2 59 aa3.62□□□□□ -1.83
VPS13C-201ENST00000249837 KNCNA6PVL3 124 aa3.61□□□□□ -1.83
VPS13C-201ENST00000249837 DEFB1P60022 68 aa3.61□□□□□ -1.83
VPS13C-201ENST00000249837 SUMO2P61956 95 aaKnown RBP3.61□□□□□ -1.83
VPS13C-201ENST00000249837 C9orf139Q6ZV77 190 aa3.61□□□□□ -1.83
VPS13C-201ENST00000249837 C11orf44Q8N8P7 122 aa3.61□□□□□ -1.83
VPS13C-201ENST00000249837 PRADC1Q9BSG0 188 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms