RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 XKRY2A2RUG3 117 aa13.65□□□□□ -0.22
VIM-201ENST00000224237 CCL24O00175 119 aa13.65□□□□□ -0.22
VIM-201ENST00000224237 PAFAH1B2P68402 229 aa13.65□□□□□ -0.22
VIM-201ENST00000224237 COX19Q49B96 90 aa13.65□□□□□ -0.22
VIM-201ENST00000224237 NIT2Q9NQR4 276 aa13.65□□□□□ -0.22
VIM-201ENST00000224237 NIPBLQ6KC79 2804 aaeCLIP13.65□□□□□ -0.222e-7■■□□□ 12.5
VIM-201ENST00000224237 K7EQG2 157 aa13.65□□□□□ -0.22
VIM-201ENST00000224237 SPINK4O60575 86 aa13.65□□□□□ -0.22
VIM-201ENST00000224237 SNRPD3P62318 126 aaKnown RBP13.65□□□□□ -0.22
VIM-201ENST00000224237 TFPI2P48307 235 aa13.64□□□□□ -0.23
VIM-201ENST00000224237 WDR73Q6P4I2 378 aa13.64□□□□□ -0.23
VIM-201ENST00000224237 RASL11AQ6T310 242 aa13.64□□□□□ -0.23
VIM-201ENST00000224237 OR8A1Q8NGG7 326 aa13.64□□□□□ -0.23
VIM-201ENST00000224237 OR10D4PQ8NGN7 298 aa13.64□□□□□ -0.23
VIM-201ENST00000224237 GTSF1Q8WW33 167 aa13.64□□□□□ -0.23
VIM-201ENST00000224237 TEP1Q99973 2627 aaKnown RBP13.64□□□□□ -0.23
VIM-201ENST00000224237 CSN3P07498 182 aa13.63□□□□□ -0.23
VIM-201ENST00000224237 ZNF705DP0CH99 300 aaPredicted RBP13.63□□□□□ -0.23
VIM-201ENST00000224237 ZNF705BP0CI00 300 aaPredicted RBP13.63□□□□□ -0.23
VIM-201ENST00000224237 ZNF80P51504 273 aaPredicted RBP13.63□□□□□ -0.23
VIM-201ENST00000224237 PDZD11Q5EBL8 140 aa13.63□□□□□ -0.23
VIM-201ENST00000224237 MRPL54Q6P161 138 aaKnown RBP13.63□□□□□ -0.23
VIM-201ENST00000224237 ATP5L2Q7Z4Y8 100 aa13.63□□□□□ -0.23
VIM-201ENST00000224237 GNB1LQ9BYB4 327 aa13.63□□□□□ -0.23
VIM-201ENST00000224237 JMJD1CQ15652 2540 aa13.63□□□□□ -0.23
VIM-201ENST00000224237 FABP5P3A8MUU1 101 aa13.63□□□□□ -0.23
VIM-201ENST00000224237 FOXA3P55318 350 aaPredicted RBP13.63□□□□□ -0.23
VIM-201ENST00000224237 HIST1H1AQ02539 215 aaPredicted RBP13.63□□□□□ -0.23
VIM-201ENST00000224237 RBPMS2Q6ZRY4 209 aaKnown RBP13.63□□□□□ -0.23
VIM-201ENST00000224237 HIST1H2BLQ99880 126 aa13.63□□□□□ -0.23
VIM-201ENST00000224237 TMEM189A5PLL7 270 aa13.62□□□□□ -0.23
VIM-201ENST00000224237 SNURFLB1AK76 121 aa13.62□□□□□ -0.23
VIM-201ENST00000224237 MT-ND6P03923 174 aa13.62□□□□□ -0.23
VIM-201ENST00000224237 FABP4P15090 132 aa13.62□□□□□ -0.23
VIM-201ENST00000224237 DYNLRB2Q8TF09 96 aa13.62□□□□□ -0.23
VIM-201ENST00000224237 A0A1B0GUS0 222 aa13.61□□□□□ -0.23
VIM-201ENST00000224237 ZNF688P0C7X2 276 aa13.61□□□□□ -0.23
VIM-201ENST00000224237 GZMBP10144 247 aa13.61□□□□□ -0.23
VIM-201ENST00000224237 PYY3Q5JQD4 70 aa13.61□□□□□ -0.23
VIM-201ENST00000224237 Q6AWC8 147 aa13.61□□□□□ -0.23
VIM-201ENST00000224237 TRAV2A0A0B4J234 112 aa13.61□□□□□ -0.23
VIM-201ENST00000224237 TRBV7-9A0A0J9YWB2 115 aa13.61□□□□□ -0.23
VIM-201ENST00000224237 F6UB75 175 aa13.61□□□□□ -0.23
VIM-201ENST00000224237 FRMD6-AS1P0C7T7 363 aa13.61□□□□□ -0.23
VIM-201ENST00000224237 DEFB1P60022 68 aa13.61□□□□□ -0.23
VIM-201ENST00000224237 PSMG4Q5JS54 123 aa13.61□□□□□ -0.23
VIM-201ENST00000224237 WNK1Q9H4A3 2382 aa13.61□□□□□ -0.23
VIM-201ENST00000224237 KRTAP10-3P60369 221 aa13.6□□□□□ -0.23
VIM-201ENST00000224237 RPS20P60866 119 aaKnown RBP13.6□□□□□ -0.23
VIM-201ENST00000224237 DNLZQ5SXM8 178 aa13.6□□□□□ -0.23
VIM-201ENST00000224237 PGLYRP4Q96LB8 373 aa13.6□□□□□ -0.23
VIM-201ENST00000224237 PACRGQ96M98 296 aaPredicted RBP13.6□□□□□ -0.23
VIM-201ENST00000224237 HLA-DQA1P01909 254 aa13.59□□□□□ -0.23
VIM-201ENST00000224237 TMEM136Q6ZRR5 245 aa13.59□□□□□ -0.23
VIM-201ENST00000224237 FAM19A4Q96LR4 140 aa13.59□□□□□ -0.23
VIM-201ENST00000224237 MRPL18Q9H0U6 180 aaKnown RBP13.59□□□□□ -0.23
VIM-201ENST00000224237 LINC01559Q495D7 138 aa13.59□□□□□ -0.23
VIM-201ENST00000224237 TMEM61Q8N0U2 210 aa13.59□□□□□ -0.23
VIM-201ENST00000224237 SIGLEC8Q9NYZ4 499 aa13.59□□□□□ -0.23
VIM-201ENST00000224237 A0A1B0GXF2 115 aa13.58□□□□□ -0.24
VIM-201ENST00000224237 ADARB2-AS1A8MUL3 147 aa13.58□□□□□ -0.24
VIM-201ENST00000224237 ORM1P02763 201 aa13.58□□□□□ -0.24
VIM-201ENST00000224237 RAB4BP61018 213 aa13.58□□□□□ -0.24
VIM-201ENST00000224237 HBBP68871 147 aa13.58□□□□□ -0.24
VIM-201ENST00000224237 DEFB114Q30KQ6 69 aa13.58□□□□□ -0.24
VIM-201ENST00000224237 TMSB15BA0A087X1C1 80 aa13.57□□□□□ -0.24
VIM-201ENST00000224237 AMBPP02760 352 aa13.57□□□□□ -0.24
VIM-201ENST00000224237 NDUFA11Q86Y39 141 aa13.57□□□□□ -0.24
VIM-201ENST00000224237 ZFAND2AQ8N6M9 145 aa13.57□□□□□ -0.24
VIM-201ENST00000224237 TMEM18Q96B42 140 aa13.57□□□□□ -0.24
VIM-201ENST00000224237 GSN-AS1Q9NRJ2 163 aa13.57□□□□□ -0.24
VIM-201ENST00000224237 CRISP2P16562 243 aa13.57□□□□□ -0.24
VIM-201ENST00000224237 NSUN5P1Q3KNT7 163 aa13.57□□□□□ -0.24
VIM-201ENST00000224237 A0A0J9YX75 114 aa13.56□□□□□ -0.24
VIM-201ENST00000224237 A0A1B0GUT8 65 aa13.56□□□□□ -0.24
VIM-201ENST00000224237 EBLN2Q6P2I7 272 aa13.56□□□□□ -0.24
VIM-201ENST00000224237 APRG1Q8IVJ8 170 aa13.56□□□□□ -0.24
VIM-201ENST00000224237 TRAV25A0A0B4J276 109 aa13.55□□□□□ -0.24
VIM-201ENST00000224237 CAMPP49913 170 aa13.55□□□□□ -0.24
VIM-201ENST00000224237 CD300EQ496F6 205 aaPredicted RBP13.55□□□□□ -0.24
VIM-201ENST00000224237 PRR9Q5T870 116 aa13.55□□□□□ -0.24
VIM-201ENST00000224237 GDF5OSQ5U4N7 250 aa13.55□□□□□ -0.24
VIM-201ENST00000224237 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.55□□□□□ -0.24
VIM-201ENST00000224237 BORCS7Q96B45 105 aa13.55□□□□□ -0.24
VIM-201ENST00000224237 ODF3Q96PU9 254 aa13.55□□□□□ -0.24
VIM-201ENST00000224237 GPX1P07203 203 aa13.55□□□□□ -0.24
VIM-201ENST00000224237 FOXI2Q6ZQN5 318 aa13.55□□□□□ -0.24
VIM-201ENST00000224237 SPAG8Q99932 426 aaPredicted RBP13.55□□□□□ -0.24
VIM-201ENST00000224237 TPPP3Q9BW30 176 aa13.55□□□□□ -0.24
VIM-201ENST00000224237 TRAV21A0A0B4J279 112 aa13.54□□□□□ -0.24
VIM-201ENST00000224237 CD33P20138 364 aa13.54□□□□□ -0.24
VIM-201ENST00000224237 RIGQ13278 110 aa13.54□□□□□ -0.24
VIM-201ENST00000224237 TENM1Q9UKZ4 2725 aa13.54□□□□□ -0.24
VIM-201ENST00000224237 IGKV3D-20A0A0C4DH25 116 aa13.53□□□□□ -0.24
VIM-201ENST00000224237 A0A1B0GW15 77 aa13.53□□□□□ -0.24
VIM-201ENST00000224237 OR4C46A6NHA9 309 aa13.53□□□□□ -0.24
VIM-201ENST00000224237 J3KRW8 73 aa13.53□□□□□ -0.24
VIM-201ENST00000224237 DUSP14O95147 198 aaKnown RBP13.53□□□□□ -0.24
VIM-201ENST00000224237 ARMS2P0C7Q2 107 aa13.53□□□□□ -0.24
VIM-201ENST00000224237 Q0VG73 95 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms