RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 IGKV3-20P01619 116 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 MDKP21741 143 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-201ENST00000011700 ZNF833PQ6ZTB9 187 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 ETV2O00321 342 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-201ENST00000011700 IL9P15248 144 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 IGFL3Q6UXB1 125 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 SDHAF1A6NFY7 115 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 RNF185Q96GF1 192 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 TP53TG1Q9Y2A0 90 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 A0A087X0K7 114 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 MED14OSP0DP75 135 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 CARD19Q96LW7 228 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 IGHV1-58A0A0C4DH39 117 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 LOC101059948A0A1B0GTJ6 334 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 PSPNO60542 156 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 H7C423 109 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 ELANEP08246 267 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 CRYBA2P53672 197 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 OPRPNQ99935 248 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-201ENST00000011700 TM2D2Q9BX73 214 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 TRBV19A0A075B6N1 114 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 IGKV1-9A0A0C4DH69 117 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 TIAF1O95411 115 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 RBM3P98179 157 aaKnown RBP4.91□□□□□ -1.62
VPS13D-201ENST00000011700 CDCP2Q5VXM1 449 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 THSD7BQ9C0I4 1608 aa4.91□□□□□ -1.62
VPS13D-201ENST00000011700 J3QQQ9 107 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 NPSP0C0P6 89 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 PYYP10082 97 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 MRPL23Q16540 153 aaKnown RBP4.9□□□□□ -1.62
VPS13D-201ENST00000011700 QRFPP83859 136 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 PIP4P2Q8N4L2 257 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 LEAP2Q969E1 77 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 REG4Q9BYZ8 158 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 NDUFA12Q9UI09 145 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 TRAV12-1A0A0B4J245 112 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 IGKV1D-13A0A0B4J2D9 117 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.9□□□□□ -1.62
VPS13D-201ENST00000011700 IGKV1-13P0DP09 117 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 VWC2Q2TAL6 325 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 Q5BKY6 102 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 IGHV1OR15-1A0A075B7D0 117 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 IGLC2P0DOY2 106 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 IGLC3P0DOY3 106 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 DMRTC2Q8IXT2 367 aaPredicted RBP4.9□□□□□ -1.62
VPS13D-201ENST00000011700 TMEM89A2RUT3 159 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 IGHV1-46P01743 117 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 EXOC3-AS1Q8N2X6 119 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 C14orf178Q8N769 122 aaPredicted RBP4.9□□□□□ -1.62
VPS13D-201ENST00000011700 LYPD6BQ8NI32 183 aa4.9□□□□□ -1.62
VPS13D-201ENST00000011700 TRAV40A0A0B4J280 105 aa4.9□□□□□ -1.63
VPS13D-201ENST00000011700 GNG5P63218 68 aa4.9□□□□□ -1.63
VPS13D-201ENST00000011700 C4orf48Q5BLP8 95 aa4.9□□□□□ -1.63
VPS13D-201ENST00000011700 IGHV1-18A0A0C4DH31 117 aa4.9□□□□□ -1.63
VPS13D-201ENST00000011700 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.9□□□□□ -1.63
VPS13D-201ENST00000011700 SNAI2O43623 268 aa4.9□□□□□ -1.63
VPS13D-201ENST00000011700 DAD1P61803 113 aa4.9□□□□□ -1.63
VPS13D-201ENST00000011700 HIGD2BQ4VC39 106 aa4.9□□□□□ -1.63
VPS13D-201ENST00000011700 PRR25Q96S07 402 aa4.9□□□□□ -1.63
VPS13D-201ENST00000011700 RHPN1-AS1Q9BWJ2 59 aa4.9□□□□□ -1.63
VPS13D-201ENST00000011700 USP24Q9UPU5 2620 aa4.9□□□□□ -1.63
VPS13D-201ENST00000011700 SPAARA0A1B0GVQ0 90 aa4.9□□□□□ -1.63
VPS13D-201ENST00000011700 CD55P08174 381 aa4.9□□□□□ -1.63
VPS13D-201ENST00000011700 GGNQ86UU5 652 aa4.9□□□□□ -1.63
VPS13D-201ENST00000011700 KLK5Q9Y337 293 aaPredicted RBP4.9□□□□□ -1.63
VPS13D-201ENST00000011700 CHKB-CPT1BH3BT56 60 aa4.9□□□□□ -1.63
VPS13D-201ENST00000011700 RNASE2P10153 161 aaKnown RBP4.9□□□□□ -1.63
VPS13D-201ENST00000011700 CHD8Q9HCK8 2581 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 LOXL1Q08397 574 aaPredicted RBP4.89□□□□□ -1.63
VPS13D-201ENST00000011700 MRPL36Q9P0J6 103 aaKnown RBP4.89□□□□□ -1.63
VPS13D-201ENST00000011700 CXCL1P09341 107 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 ZNF672Q499Z4 452 aaPredicted RBP4.89□□□□□ -1.63
VPS13D-201ENST00000011700 TEX36Q5VZQ5 186 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 COLQQ9Y215 455 aaPredicted RBP4.89□□□□□ -1.63
VPS13D-201ENST00000011700 FOXF2Q12947 444 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 SVIPQ8NHG7 77 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 ST6GALNAC6Q969X2 333 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 FASNP49327 2511 aaKnown RBP4.89□□□□□ -1.63
VPS13D-201ENST00000011700 A0A1B0GX51 115 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 GAS1P54826 345 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 LINC01619G3V211 115 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 KLHL30-AS1Q8NEE0 82 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 TRAV25A0A0B4J276 109 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 IGHV2-70DA0A0C4DH43 119 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 SCRT1Q9BWW7 348 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 LTAP01374 205 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 A0A0B4J2C4 111 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 RFPL3SP0C7P2 107 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 ARMS2P0C7Q2 107 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 ZNF664Q8N3J9 261 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 CCDC140Q96MF4 163 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 CYTL1Q9NRR1 136 aa4.89□□□□□ -1.63
VPS13D-201ENST00000011700 NBL1P41271 181 aa4.88□□□□□ -1.63
VPS13D-201ENST00000011700 C17orf82Q86X59 251 aaPredicted RBP4.88□□□□□ -1.63
VPS13D-201ENST00000011700 BRK1Q8WUW1 75 aa4.88□□□□□ -1.63
VPS13D-201ENST00000011700 FOXL2P58012 376 aa4.88□□□□□ -1.63
VPS13D-201ENST00000011700 Q6P435 159 aa4.88□□□□□ -1.63
VPS13D-201ENST00000011700 PIFOQ8TCI5 191 aa4.88□□□□□ -1.63
VPS13D-201ENST00000011700 IGHV2-5P01817 119 aa4.88□□□□□ -1.63
VPS13D-201ENST00000011700 PNRC2Q9NPJ4 139 aaKnown RBP4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms