RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 HLA-DRB4P13762 266 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 ZNF90Q03938 601 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 RELAQ04206 551 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 TMEM155Q4W5P6 130 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 GLYATL3Q5SZD4 288 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 FAM27BQ5VT28 67 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 LCN15Q6UWW0 184 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 TMEM14EPQ6UXP3 125 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 C7orf65Q6ZTY9 151 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 LYPD6Q86Y78 171 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 ATOH7Q8N100 152 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 TCTEX1D1Q8N7M0 179 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 OR4C6Q8NH72 309 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 NAT14Q8WUY8 206 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 AQP3Q92482 292 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 CHCHD1Q96BP2 118 aaKnown RBP1.13□□□□□ -2.23
CD44-239ENST00000639002 SPANXDQ9BXN6 97 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 C16orf95Q9H693 158 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 BCL2L10Q9HD36 194 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 C14orf132Q9NPU4 83 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 SAR1AQ9NR31 198 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 TAS2R4Q9NYW5 299 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 TNFSF18Q9UNG2 199 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 TPRKBQ9Y3C4 175 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 HSPE1-MOB4S4R3N1 261 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 HLA-DRB4X5D2U9 266 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 MYH9P35579 1960 aaKnown RBP1.13□□□□□ -2.23
CD44-239ENST00000639002 DLC1Q96QB1 1528 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 KDM6AO15550 1401 aaPredicted RBP1.13□□□□□ -2.23
CD44-239ENST00000639002 TNS3Q68CZ2 1445 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 MYLKQ15746 1914 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 GRIN2AQ12879 1464 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 WDR90Q96KV7 1748 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 PTPRBP23467 1997 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 SBF1O95248 1867 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 TRPM1Q7Z4N2 1603 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 CCNB3Q8WWL7 1395 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 UTRNP46939 3433 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 EP400Q96L91 3159 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 KDM5BQ9UGL1 1544 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 M0R233 179 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 NPFFO15130 113 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 HBDP02042 147 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 PMP2P02689 132 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 TCRAP04437 139 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 APODP05090 189 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 S100A8P05109 93 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 BAALC-AS2P0C853 105 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 AKAIN1P0CW23 69 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 SAA1P0DJI8 122 aaPredicted RBP1.12□□□□□ -2.23
CD44-239ENST00000639002 MGST1P10620 155 aaKnown RBP1.12□□□□□ -2.23
CD44-239ENST00000639002 CRYGAP11844 174 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 FABP4P15090 132 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 ETV6P41212 452 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 PCBD1P61457 104 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 QRFPP83859 136 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 CIRBPQ14011 172 aaKnown RBP1.12□□□□□ -2.23
CD44-239ENST00000639002 CDK5R1Q15078 307 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 ESRGQ1W209 222 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 KRTAP20-1Q3LI63 56 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 HAGHLQ6PII5 290 aaPredicted RBP1.12□□□□□ -2.23
CD44-239ENST00000639002 SCIMPQ6UWF3 145 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 KCNRGQ8N5I3 272 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 LINC00301Q8NCQ3 95 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 MORN4Q8NDC4 146 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 OR4X2Q8NGF9 303 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 OR5D14Q8NGL3 314 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 OR2T35Q8NGX2 323 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 OR5AK2Q8NH90 309 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 ZNF418Q8TF45 676 aaPredicted RBP1.12□□□□□ -2.23
CD44-239ENST00000639002 RAB37Q96AX2 223 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 PPP3R2Q96LZ3 170 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 C20orf166-AS1Q96NR2 134 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 PSMG3Q9BT73 122 aaPredicted RBP1.12□□□□□ -2.23
CD44-239ENST00000639002 HMCN1Q96RW7 5635 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 MUC3AQ02505 3323 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 PRG4Q92954 1404 aaPredicted RBP1.12□□□□□ -2.23
CD44-239ENST00000639002 KIAA1107Q9UPP5 1409 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 FOCADQ5VW36 1801 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 CEP295Q9C0D2 2601 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 HERC1Q15751 4861 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 UTP20O75691 2785 aaKnown RBP1.12□□□□□ -2.23
CD44-239ENST00000639002 CSMD1Q96PZ7 3565 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 PHLPP1O60346 1717 aa1.12□□□□□ -2.23
CD44-239ENST00000639002 AHNAKQ09666 5890 aaKnown RBP1.12□□□□□ -2.23
CD44-239ENST00000639002 NSD1Q96L73 2696 aaPredicted RBP1.12□□□□□ -2.23
CD44-239ENST00000639002 ACACBO00763 2458 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 MYH1P12882 1939 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 MYH6P13533 1939 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 TMEM2Q9UHN6 1383 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 MYH13Q9UKX3 1938 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 TRAV27A0A087WT01 109 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 A0A1W2PNM2 257 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 OR51F1A6NGY5 319 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 ZNF670-ZNF695F2Z2N8 137 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 SNAPC5O75971 98 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 IGF2P01344 180 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 SLC25A5P05141 298 aaKnown RBP1.11□□□□□ -2.23
CD44-239ENST00000639002 LINC00694P0DN24 101 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 CSRP1P21291 193 aaKnown RBP1.11□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms