RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 EVI2AP22794 236 aa10.03□□□□□ -0.8
CCDC88A-214ENST00000621814 UQCRFS1P47985 274 aa10.03□□□□□ -0.8
CCDC88A-214ENST00000621814 FOXE3Q13461 319 aa10.03□□□□□ -0.8
CCDC88A-214ENST00000621814 Q6AWC8 147 aa10.03□□□□□ -0.8
CCDC88A-214ENST00000621814 CCL25O15444 150 aa10.02□□□□□ -0.81
CCDC88A-214ENST00000621814 NPYP01303 97 aa10.02□□□□□ -0.81
CCDC88A-214ENST00000621814 UCNP55089 124 aa10.02□□□□□ -0.81
CCDC88A-214ENST00000621814 VAMP3Q15836 100 aa10.02□□□□□ -0.81
CCDC88A-214ENST00000621814 MINOS1Q5TGZ0 78 aa10.02□□□□□ -0.81
CCDC88A-214ENST00000621814 IL17RELQ6ZVW7 336 aa10.02□□□□□ -0.81
CCDC88A-214ENST00000621814 MINOS1-NBL1R4GNA1 71 aa10.02□□□□□ -0.81
CCDC88A-214ENST00000621814 PRSS57Q6UWY2 283 aa10.02□□□□□ -0.81
CCDC88A-214ENST00000621814 BRD3OSQ6XYD6 125 aa10.02□□□□□ -0.81
CCDC88A-214ENST00000621814 PIP4P2Q8N4L2 257 aa10.02□□□□□ -0.81
CCDC88A-214ENST00000621814 ZNF738Q8NE65 137 aa10.02□□□□□ -0.81
CCDC88A-214ENST00000621814 COL25A1Q9BXS0 654 aaPredicted RBP10.02□□□□□ -0.81
CCDC88A-214ENST00000621814 IGHV2-70DA0A0C4DH43 119 aa10.01□□□□□ -0.81
CCDC88A-214ENST00000621814 GOSR1O95249 250 aa10.01□□□□□ -0.81
CCDC88A-214ENST00000621814 BMI1P35226 326 aa10.01□□□□□ -0.81
CCDC88A-214ENST00000621814 CACNG7P62955 275 aa10.01□□□□□ -0.81
CCDC88A-214ENST00000621814 Q6ZQT7 251 aa10.01□□□□□ -0.81
CCDC88A-214ENST00000621814 COX11Q9Y6N1 276 aa10.01□□□□□ -0.81
CCDC88A-214ENST00000621814 IGKV3-7A0A075B6H7 116 aa10.01□□□□□ -0.81
CCDC88A-214ENST00000621814 ZNF502Q8TBZ5 544 aa10.01□□□□□ -0.81
CCDC88A-214ENST00000621814 A0A1B0GW15 77 aa10□□□□□ -0.81
CCDC88A-214ENST00000621814 GATA1P15976 413 aaPredicted RBP10□□□□□ -0.81
CCDC88A-214ENST00000621814 UBE2E1P51965 193 aa10□□□□□ -0.81
CCDC88A-214ENST00000621814 C1orf122Q6ZSJ8 110 aa10□□□□□ -0.81
CCDC88A-214ENST00000621814 DTX2Q86UW9 622 aa10□□□□□ -0.81
CCDC88A-214ENST00000621814 SCRT2Q9NQ03 307 aa10□□□□□ -0.81
CCDC88A-214ENST00000621814 A0A096LNJ9 63 aa10□□□□□ -0.81
CCDC88A-214ENST00000621814 C19orf84I3L1E1 186 aa10□□□□□ -0.81
CCDC88A-214ENST00000621814 BUB3O43684 328 aa10□□□□□ -0.81
CCDC88A-214ENST00000621814 CCDC140Q96MF4 163 aa10□□□□□ -0.81
CCDC88A-214ENST00000621814 FABP5P3A8MUU1 101 aa9.99□□□□□ -0.81
CCDC88A-214ENST00000621814 EBI3Q14213 229 aa9.99□□□□□ -0.81
CCDC88A-214ENST00000621814 LINC01545Q5VT33 79 aa9.99□□□□□ -0.81
CCDC88A-214ENST00000621814 ZNF493Q6ZR52 646 aa9.99□□□□□ -0.81
CCDC88A-214ENST00000621814 ZNF48Q96MX3 618 aaPredicted RBP9.99□□□□□ -0.81
CCDC88A-214ENST00000621814 OOSP1A8MZH6 123 aa9.99□□□□□ -0.81
CCDC88A-214ENST00000621814 SPRY2O43597 315 aa9.99□□□□□ -0.81
CCDC88A-214ENST00000621814 EFNA4P52798 201 aa9.99□□□□□ -0.81
CCDC88A-214ENST00000621814 FAM110DQ8TAY7 271 aaPredicted RBP9.99□□□□□ -0.81
CCDC88A-214ENST00000621814 LY6EQ16553 131 aa9.98□□□□□ -0.81
CCDC88A-214ENST00000621814 NPFFO15130 113 aa9.98□□□□□ -0.81
CCDC88A-214ENST00000621814 RPL11P62913 178 aaKnown RBP9.98□□□□□ -0.81
CCDC88A-214ENST00000621814 BVES-AS1Q5T3Y7 98 aa9.98□□□□□ -0.81
CCDC88A-214ENST00000621814 ORAOV1Q8WV07 137 aa9.98□□□□□ -0.81
CCDC88A-214ENST00000621814 AJUBAQ96IF1 538 aa9.98□□□□□ -0.81
CCDC88A-214ENST00000621814 ITPR1Q14643 2758 aa9.98□□□□□ -0.81
CCDC88A-214ENST00000621814 ANKRD39Q53RE8 183 aa9.98□□□□□ -0.81
CCDC88A-214ENST00000621814 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.98□□□□□ -0.81
CCDC88A-214ENST00000621814 ZFAND3Q9H8U3 227 aa9.98□□□□□ -0.81
CCDC88A-214ENST00000621814 NMUP48645 174 aa9.97□□□□□ -0.81
CCDC88A-214ENST00000621814 DEFB1P60022 68 aa9.97□□□□□ -0.81
CCDC88A-214ENST00000621814 LMO4P61968 165 aa9.97□□□□□ -0.81
CCDC88A-214ENST00000621814 AGPAT4-IT1Q9H0P7 198 aa9.97□□□□□ -0.81
CCDC88A-214ENST00000621814 UFC1Q9Y3C8 167 aa9.97□□□□□ -0.81
CCDC88A-214ENST00000621814 CSMD2Q7Z408 3487 aa9.97□□□□□ -0.81
CCDC88A-214ENST00000621814 CENPVL3A0A0U1RRI6 287 aa9.97□□□□□ -0.81
CCDC88A-214ENST00000621814 METTL26Q96S19 204 aa9.97□□□□□ -0.81
CCDC88A-214ENST00000621814 TRAV26-2A0A0B4J265 109 aa9.96□□□□□ -0.81
CCDC88A-214ENST00000621814 CLPSL1A2RUU4 121 aa9.96□□□□□ -0.81
CCDC88A-214ENST00000621814 IGHV3-11P01762 117 aa9.96□□□□□ -0.81
CCDC88A-214ENST00000621814 HBDP02042 147 aa9.96□□□□□ -0.81
CCDC88A-214ENST00000621814 GNLYP22749 145 aa9.96□□□□□ -0.81
CCDC88A-214ENST00000621814 ZNF575Q86XF7 245 aa9.96□□□□□ -0.81
CCDC88A-214ENST00000621814 OR4C5Q8NGB2 326 aa9.96□□□□□ -0.81
CCDC88A-214ENST00000621814 EEF1AKMT3Q96AZ1 226 aa9.96□□□□□ -0.81
CCDC88A-214ENST00000621814 TMEM78Q5T7P6 136 aa9.96□□□□□ -0.82
CCDC88A-214ENST00000621814 LCNL1Q6ZST4 164 aa9.96□□□□□ -0.82
CCDC88A-214ENST00000621814 CRYBG3Q68DQ2 2970 aa9.96□□□□□ -0.82
CCDC88A-214ENST00000621814 LEPP41159 167 aa9.96□□□□□ -0.82
CCDC88A-214ENST00000621814 RPS20P60866 119 aaKnown RBP9.96□□□□□ -0.82
CCDC88A-214ENST00000621814 ATP5G2Q06055 141 aa9.96□□□□□ -0.82
CCDC88A-214ENST00000621814 UBE2V1Q13404 147 aa9.96□□□□□ -0.82
CCDC88A-214ENST00000621814 IFI27L1Q96BM0 104 aa9.96□□□□□ -0.82
CCDC88A-214ENST00000621814 C16orf92Q96LL3 132 aa9.96□□□□□ -0.82
CCDC88A-214ENST00000621814 DKK2Q9UBU2 259 aa9.96□□□□□ -0.82
CCDC88A-214ENST00000621814 TRAV40A0A0B4J280 105 aa9.95□□□□□ -0.82
CCDC88A-214ENST00000621814 C8orf86Q6ZUL3 223 aa9.95□□□□□ -0.82
CCDC88A-214ENST00000621814 GATD1Q8NB37 220 aa9.95□□□□□ -0.82
CCDC88A-214ENST00000621814 C11orf21Q9P2W6 132 aa9.95□□□□□ -0.82
CCDC88A-214ENST00000621814 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.95□□□□□ -0.822e-9■■■■□ 21.7
CCDC88A-214ENST00000621814 CELSR2Q9HCU4 2923 aa9.95□□□□□ -0.82
CCDC88A-214ENST00000621814 TRGV3P03979 118 aa9.95□□□□□ -0.82
CCDC88A-214ENST00000621814 IGLC6P0CF74 106 aa9.95□□□□□ -0.82
CCDC88A-214ENST00000621814 C12orf54Q6X4T0 127 aa9.95□□□□□ -0.82
CCDC88A-214ENST00000621814 MS4A6AQ9H2W1 248 aa9.95□□□□□ -0.82
CCDC88A-214ENST00000621814 IGKV3D-20A0A0C4DH25 116 aa9.94□□□□□ -0.82
CCDC88A-214ENST00000621814 TRBV12-3P01733 135 aa9.94□□□□□ -0.82
CCDC88A-214ENST00000621814 IGF1P05019 195 aa9.94□□□□□ -0.82
CCDC88A-214ENST00000621814 PRSS1P07477 247 aa9.94□□□□□ -0.82
CCDC88A-214ENST00000621814 S100A7P31151 101 aa9.94□□□□□ -0.82
CCDC88A-214ENST00000621814 NAA38Q9BRA0 125 aaKnown RBP9.94□□□□□ -0.82
CCDC88A-214ENST00000621814 MAP1LC3AQ9H492 121 aa9.94□□□□□ -0.82
CCDC88A-214ENST00000621814 U3KQK5 164 aa9.94□□□□□ -0.82
CCDC88A-214ENST00000621814 TAX1BP3O14907 124 aa9.94□□□□□ -0.82
CCDC88A-214ENST00000621814 COX8AP10176 69 aa9.94□□□□□ -0.82
CCDC88A-214ENST00000621814 C5orf56Q8N8D9 126 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms