RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 H3BUT2 72 aa13.31□□□□□ -0.28
VPS53-215ENST00000573028 OCIAD2Q56VL3 154 aa13.31□□□□□ -0.28
VPS53-215ENST00000573028 VKORC1Q9BQB6 163 aa13.31□□□□□ -0.28
VPS53-215ENST00000573028 NDUFA3O95167 84 aa13.31□□□□□ -0.28
VPS53-215ENST00000573028 GATA1P15976 413 aaPredicted RBP13.31□□□□□ -0.28
VPS53-215ENST00000573028 GATD1Q8NB37 220 aa13.31□□□□□ -0.28
VPS53-215ENST00000573028 OR11H6Q8NGC7 330 aa13.31□□□□□ -0.28
VPS53-215ENST00000573028 SMAD5-AS1Q9Y6J3 95 aa13.31□□□□□ -0.28
VPS53-215ENST00000573028 PRAC2D3DTV9 90 aa13.3□□□□□ -0.28
VPS53-215ENST00000573028 CTSGP08311 255 aa13.3□□□□□ -0.28
VPS53-215ENST00000573028 NPBQ8NG41 125 aa13.3□□□□□ -0.28
VPS53-215ENST00000573028 A1L4Q6 167 aa13.3□□□□□ -0.28
VPS53-215ENST00000573028 ZNF207O43670 478 aaKnown RBP13.3□□□□□ -0.28
VPS53-215ENST00000573028 FGF6P10767 208 aa13.3□□□□□ -0.28
VPS53-215ENST00000573028 CDSNQ15517 529 aa13.3□□□□□ -0.28
VPS53-215ENST00000573028 TTTY13Q9BZ97 58 aa13.3□□□□□ -0.28
VPS53-215ENST00000573028 CCL21O00585 134 aa13.3□□□□□ -0.28
VPS53-215ENST00000573028 BMI1P35226 326 aa13.3□□□□□ -0.28
VPS53-215ENST00000573028 TCF15Q12870 199 aa13.3□□□□□ -0.28
VPS53-215ENST00000573028 LY6G5BQ8NDX9 201 aa13.3□□□□□ -0.28
VPS53-215ENST00000573028 NDUFS7O75251 213 aa13.29□□□□□ -0.28
VPS53-215ENST00000573028 LGALS9BQ3B8N2 356 aa13.29□□□□□ -0.28
VPS53-215ENST00000573028 LGALS9CQ6DKI2 356 aa13.29□□□□□ -0.28
VPS53-215ENST00000573028 VMO1Q7Z5L0 202 aa13.29□□□□□ -0.28
VPS53-215ENST00000573028 PRSS1P07477 247 aa13.29□□□□□ -0.28
VPS53-215ENST00000573028 SMAD7O15105 426 aaKnown RBP13.28□□□□□ -0.28
VPS53-215ENST00000573028 LEPP41159 167 aa13.28□□□□□ -0.28
VPS53-215ENST00000573028 U3KQK5 164 aa13.28□□□□□ -0.28
VPS53-215ENST00000573028 HRNRQ86YZ3 2850 aaPredicted RBP13.28□□□□□ -0.28
VPS53-215ENST00000573028 PRTN3P24158 256 aa13.28□□□□□ -0.28
VPS53-215ENST00000573028 SEC11AP67812 179 aa13.28□□□□□ -0.28
VPS53-215ENST00000573028 KIR3DS1Q14943 382 aa13.28□□□□□ -0.28
VPS53-215ENST00000573028 MAP1LC3AQ9H492 121 aa13.28□□□□□ -0.28
VPS53-215ENST00000573028 IGHG4P01861 327 aa13.27□□□□□ -0.28
VPS53-215ENST00000573028 A6NDN8 102 aa13.27□□□□□ -0.29
VPS53-215ENST00000573028 C15orf32Q32M92 178 aa13.27□□□□□ -0.29
VPS53-215ENST00000573028 IL17RELQ6ZVW7 336 aa13.27□□□□□ -0.29
VPS53-215ENST00000573028 TTC9CQ8N5M4 171 aa13.27□□□□□ -0.29
VPS53-215ENST00000573028 CLEC3BP05452 202 aa13.26□□□□□ -0.29
VPS53-215ENST00000573028 S100A7P31151 101 aa13.26□□□□□ -0.29
VPS53-215ENST00000573028 BOD1L2Q8IYS8 172 aa13.26□□□□□ -0.29
VPS53-215ENST00000573028 FABP5P3A8MUU1 101 aa13.26□□□□□ -0.29
VPS53-215ENST00000573028 JMJD8Q96S16 334 aa13.26□□□□□ -0.29
VPS53-215ENST00000573028 SAP30O75446 220 aa13.26□□□□□ -0.29
VPS53-215ENST00000573028 J3KRW8 73 aa13.25□□□□□ -0.29
VPS53-215ENST00000573028 RPS20P60866 119 aaKnown RBP13.25□□□□□ -0.29
VPS53-215ENST00000573028 IGHV7-81A0A0B4J1V7 117 aa13.25□□□□□ -0.29
VPS53-215ENST00000573028 SCGB2A1O75556 95 aa13.25□□□□□ -0.29
VPS53-215ENST00000573028 IGLC6P0CF74 106 aa13.25□□□□□ -0.29
VPS53-215ENST00000573028 CCDC144NLQ6NUI1 221 aa13.25□□□□□ -0.29
VPS53-215ENST00000573028 UFC1Q9Y3C8 167 aa13.25□□□□□ -0.29
VPS53-215ENST00000573028 ODF3BA8MYP8 253 aa13.24□□□□□ -0.29
VPS53-215ENST00000573028 TNFRSF6BO95407 300 aa13.24□□□□□ -0.29
VPS53-215ENST00000573028 GCSHP23434 173 aa13.24□□□□□ -0.29
VPS53-215ENST00000573028 CLEC19AQ6UXS0 136 aa13.24□□□□□ -0.29
VPS53-215ENST00000573028 OR1N2Q8NGR9 330 aa13.24□□□□□ -0.29
VPS53-215ENST00000573028 RNF185Q96GF1 192 aa13.24□□□□□ -0.29
VPS53-215ENST00000573028 HSD52Q0P140 79 aa13.24□□□□□ -0.29
VPS53-215ENST00000573028 A0A0G2JLM5 398 aa13.23□□□□□ -0.29
VPS53-215ENST00000573028 COTL1Q14019 142 aa13.23□□□□□ -0.29
VPS53-215ENST00000573028 FOXC2Q99958 501 aa13.23□□□□□ -0.29
VPS53-215ENST00000573028 IGKV2D-26A0A0A0MRZ7 120 aa13.23□□□□□ -0.29
VPS53-215ENST00000573028 TRAV26-2A0A0B4J265 109 aa13.23□□□□□ -0.29
VPS53-215ENST00000573028 G3V318 75 aa13.23□□□□□ -0.29
VPS53-215ENST00000573028 M0R1W7 72 aa13.23□□□□□ -0.29
VPS53-215ENST00000573028 ZFP36P26651 326 aaKnown RBP13.23□□□□□ -0.29
VPS53-215ENST00000573028 Q6ZQT7 251 aa13.23□□□□□ -0.29
VPS53-215ENST00000573028 C9orf118A6NHY6 69 aa13.22□□□□□ -0.29
VPS53-215ENST00000573028 K7EMI3 77 aa13.22□□□□□ -0.29
VPS53-215ENST00000573028 GTF2H5Q6ZYL4 71 aa13.22□□□□□ -0.29
VPS53-215ENST00000573028 GTSCR1Q86UQ5 136 aa13.22□□□□□ -0.29
VPS53-215ENST00000573028 TMEM158Q8WZ71 300 aa13.22□□□□□ -0.29
VPS53-215ENST00000573028 PAX8Q06710 450 aa13.22□□□□□ -0.29
VPS53-215ENST00000573028 ZNF575Q86XF7 245 aa13.22□□□□□ -0.29
VPS53-215ENST00000573028 MEGF9Q9H1U4 602 aa13.22□□□□□ -0.29
VPS53-215ENST00000573028 K7ERU9 68 aa13.22□□□□□ -0.29
VPS53-215ENST00000573028 TRGV3P03979 118 aa13.22□□□□□ -0.29
VPS53-215ENST00000573028 OR9G4Q8NGQ1 327 aa13.22□□□□□ -0.29
VPS53-215ENST00000573028 MAP1AP78559 2803 aaPredicted RBP13.22□□□□□ -0.29
VPS53-215ENST00000573028 DTX2Q86UW9 622 aa13.21□□□□□ -0.29
VPS53-215ENST00000573028 FBLL1A6NHQ2 334 aaKnown RBP13.21□□□□□ -0.29
VPS53-215ENST00000573028 LINC01548A6NM66 108 aa13.21□□□□□ -0.29
VPS53-215ENST00000573028 H3BRM9 83 aa13.21□□□□□ -0.29
VPS53-215ENST00000573028 ATP6V0E1O15342 81 aa13.21□□□□□ -0.29
VPS53-215ENST00000573028 SPRY2O43597 315 aa13.21□□□□□ -0.29
VPS53-215ENST00000573028 TMEM190Q8WZ59 177 aa13.21□□□□□ -0.29
VPS53-215ENST00000573028 ZNF48Q96MX3 618 aaPredicted RBP13.21□□□□□ -0.29
VPS53-215ENST00000573028 TMEM160Q9NX00 188 aa13.21□□□□□ -0.29
VPS53-215ENST00000573028 RIPPLY3P57055 190 aa13.2□□□□□ -0.3
VPS53-215ENST00000573028 ADAMTSL5Q6ZMM2 481 aa13.2□□□□□ -0.3
VPS53-215ENST00000573028 Q8N9W7 124 aa13.2□□□□□ -0.3
VPS53-215ENST00000573028 OR2K2Q8NGT1 345 aa13.2□□□□□ -0.3
VPS53-215ENST00000573028 DPF1Q92782 380 aa13.2□□□□□ -0.3
VPS53-215ENST00000573028 LINC00527Q9UJ94 153 aa13.2□□□□□ -0.3
VPS53-215ENST00000573028 COL25A1Q9BXS0 654 aaPredicted RBP13.2□□□□□ -0.3
VPS53-215ENST00000573028 C11orf21Q9P2W6 132 aa13.2□□□□□ -0.3
VPS53-215ENST00000573028 MSRB2Q9Y3D2 182 aa13.2□□□□□ -0.3
VPS53-215ENST00000573028 AGPAT4-IT1Q9H0P7 198 aa13.2□□□□□ -0.3
VPS53-215ENST00000573028 GOSR1O95249 250 aa13.19□□□□□ -0.3
VPS53-215ENST00000573028 OR4X2Q8NGF9 303 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 131.5 ms