RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 GFI1BQ5VTD9 330 aa9.35□□□□□ -0.91
CLK3-224ENST00000568605 CEMP1Q6PRD7 247 aaPredicted RBP9.35□□□□□ -0.91
CLK3-224ENST00000568605 IQCF2Q8IXL9 164 aa9.35□□□□□ -0.91
CLK3-224ENST00000568605 TCTE3Q8IZS6 198 aa9.35□□□□□ -0.91
CLK3-224ENST00000568605 ARL6IP6Q8N6S5 226 aa9.35□□□□□ -0.91
CLK3-224ENST00000568605 C16orf74Q96GX8 76 aa9.35□□□□□ -0.91
CLK3-224ENST00000568605 ZNF471Q9BX82 626 aaPredicted RBP9.35□□□□□ -0.91
CLK3-224ENST00000568605 STARD9Q9P2P6 4700 aa9.34□□□□□ -0.91
CLK3-224ENST00000568605 TRBV7-9A0A0J9YWB2 115 aa9.34□□□□□ -0.91
CLK3-224ENST00000568605 J3KRW8 73 aa9.34□□□□□ -0.91
CLK3-224ENST00000568605 EIF3GO75821 320 aaKnown RBP eCLIP9.34□□□□□ -0.91
CLK3-224ENST00000568605 NMBP08949 121 aa9.34□□□□□ -0.91
CLK3-224ENST00000568605 CT45A10P0DMU9 189 aa9.34□□□□□ -0.91
CLK3-224ENST00000568605 GCHFRP30047 84 aa9.34□□□□□ -0.91
CLK3-224ENST00000568605 OR11H4Q8NGC9 324 aa9.34□□□□□ -0.91
CLK3-224ENST00000568605 HYLS1Q96M11 299 aa9.34□□□□□ -0.91
CLK3-224ENST00000568605 CYTL1Q9NRR1 136 aa9.34□□□□□ -0.91
CLK3-224ENST00000568605 YTHDF2Q9Y5A9 579 aaKnown RBP9.34□□□□□ -0.91
CLK3-224ENST00000568605 TRAV10A0A0B4J240 114 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 SERTM2A0A1B0GWG4 89 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 C7orf71A4D174 169 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 DIRC3C9JPN6 131 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 K7EQM0 130 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 GPX1P07203 203 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 CRISP2P16562 243 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 ZNF138P52744 262 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 ERCC8Q13216 396 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 ZNF493Q6ZR52 646 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 AKAP14Q86UN6 197 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 CCDC28AQ8IWP9 274 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 C5orf17Q8NAS9 161 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 C2CD4CQ8TF44 421 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 TMEM263Q8WUH6 116 aaKnown RBP9.33□□□□□ -0.92
CLK3-224ENST00000568605 ST6GAL2Q96JF0 529 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 PYGO2Q9BRQ0 406 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 AGPAT4-IT1Q9H0P7 198 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 ZNF492Q9P255 531 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 RPH3ALQ9UNE2 315 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 CELA1Q9UNI1 258 aa9.33□□□□□ -0.92
CLK3-224ENST00000568605 DYNC2H1Q8NCM8 4307 aaKnown RBP9.32□□□□□ -0.92
CLK3-224ENST00000568605 TRAV12-3A0A0B4J271 114 aa9.32□□□□□ -0.92
CLK3-224ENST00000568605 MAP1LC3B2A6NCE7 125 aa9.32□□□□□ -0.92
CLK3-224ENST00000568605 PGPA6NDG6 321 aa9.32□□□□□ -0.92
CLK3-224ENST00000568605 ZNF705GA8MUZ8 300 aaPredicted RBP9.32□□□□□ -0.92
CLK3-224ENST00000568605 KLLNB2CW77 178 aa9.32□□□□□ -0.92
CLK3-224ENST00000568605 UMAD1C9J7I0 102 aa9.32□□□□□ -0.92
CLK3-224ENST00000568605 SEC11BP0C7V7 166 aa9.32□□□□□ -0.92
CLK3-224ENST00000568605 TPT1P13693 172 aaKnown RBP9.32□□□□□ -0.92
CLK3-224ENST00000568605 HTN1P15515 57 aa9.32□□□□□ -0.92
CLK3-224ENST00000568605 TCTAP57738 103 aa9.32□□□□□ -0.92
CLK3-224ENST00000568605 FAM222AQ5U5X8 452 aa9.32□□□□□ -0.92
CLK3-224ENST00000568605 Q6ZTC4 211 aa9.32□□□□□ -0.92
CLK3-224ENST00000568605 STOML3Q8TAV4 291 aa9.32□□□□□ -0.92
CLK3-224ENST00000568605 TMED6Q8WW62 240 aa9.32□□□□□ -0.92
CLK3-224ENST00000568605 VGLL1Q99990 258 aa9.32□□□□□ -0.92
CLK3-224ENST00000568605 MAP1LC3BQ9GZQ8 125 aa9.32□□□□□ -0.92
CLK3-224ENST00000568605 DKK2Q9UBU2 259 aa9.32□□□□□ -0.92
CLK3-224ENST00000568605 LENEPQ9Y5L5 61 aa9.32□□□□□ -0.92
CLK3-224ENST00000568605 hCG_2014768A0A024R1R8 64 aa9.31□□□□□ -0.92
CLK3-224ENST00000568605 LCE6AA0A183 80 aa9.31□□□□□ -0.92
CLK3-224ENST00000568605 LYRM9A8MSI8 78 aa9.31□□□□□ -0.92
CLK3-224ENST00000568605 C1QBP02746 253 aa9.31□□□□□ -0.92
CLK3-224ENST00000568605 TMUB2Q71RG4 321 aa9.31□□□□□ -0.92
CLK3-224ENST00000568605 Q8TAT8 98 aa9.31□□□□□ -0.92
CLK3-224ENST00000568605 SUN5Q8TC36 379 aa9.31□□□□□ -0.92
CLK3-224ENST00000568605 FAM19A4Q96LR4 140 aa9.31□□□□□ -0.92
CLK3-224ENST00000568605 A0A1W2PRE2 83 aa9.3□□□□□ -0.92
CLK3-224ENST00000568605 FBLL1A6NHQ2 334 aaKnown RBP9.3□□□□□ -0.92
CLK3-224ENST00000568605 SNURFLB1AK76 121 aa9.3□□□□□ -0.92
CLK3-224ENST00000568605 DAD1P61803 113 aa9.3□□□□□ -0.92
CLK3-224ENST00000568605 KIR3DS1Q14943 382 aa9.3□□□□□ -0.92
CLK3-224ENST00000568605 C12orf74Q32Q52 190 aa9.3□□□□□ -0.92
CLK3-224ENST00000568605 EIF5AL1Q6IS14 154 aaKnown RBP9.3□□□□□ -0.92
CLK3-224ENST00000568605 DPPA3Q6W0C5 159 aa9.3□□□□□ -0.92
CLK3-224ENST00000568605 SSX7Q7RTT5 188 aa9.3□□□□□ -0.92
CLK3-224ENST00000568605 ZNF680Q8NEM1 530 aa9.3□□□□□ -0.92
CLK3-224ENST00000568605 NDFIP1Q9BT67 221 aa9.3□□□□□ -0.92
CLK3-224ENST00000568605 NKX6-2Q9C056 277 aaPredicted RBP9.3□□□□□ -0.92
CLK3-224ENST00000568605 DEFB131BA0A096LNP1 70 aa9.29□□□□□ -0.92
CLK3-224ENST00000568605 RNASE4P34096 147 aaKnown RBP9.29□□□□□ -0.92
CLK3-224ENST00000568605 BTN1A1Q13410 526 aa9.29□□□□□ -0.92
CLK3-224ENST00000568605 ZNF726P1Q15940 193 aa9.29□□□□□ -0.92
CLK3-224ENST00000568605 GOLT1AQ6ZVE7 132 aa9.29□□□□□ -0.92
CLK3-224ENST00000568605 ZNF767PQ75MW2 155 aa9.29□□□□□ -0.92
CLK3-224ENST00000568605 ZFAND2AQ8N6M9 145 aa9.29□□□□□ -0.92
CLK3-224ENST00000568605 RNASE8Q8TDE3 154 aaKnown RBP9.29□□□□□ -0.92
CLK3-224ENST00000568605 TIMM8BQ9Y5J9 83 aaPredicted RBP9.29□□□□□ -0.92
CLK3-224ENST00000568605 KMT2CQ8NEZ4 4911 aaKnown RBP9.29□□□□□ -0.92
CLK3-224ENST00000568605 ALMS1Q8TCU4 4167 aa9.28□□□□□ -0.92
CLK3-224ENST00000568605 RGS13O14921 159 aa9.28□□□□□ -0.92
CLK3-224ENST00000568605 TCRAP04437 139 aa9.28□□□□□ -0.92
CLK3-224ENST00000568605 FGF8P55075 233 aaPredicted RBP9.28□□□□□ -0.92
CLK3-224ENST00000568605 CD300CQ08708 224 aa9.28□□□□□ -0.92
CLK3-224ENST00000568605 ZFP69Q49AA0 526 aa9.28□□□□□ -0.92
CLK3-224ENST00000568605 EIF4E3Q8N5X7 224 aaKnown RBP9.28□□□□□ -0.92
CLK3-224ENST00000568605 CYB561D1Q8N8Q1 229 aa9.28□□□□□ -0.92
CLK3-224ENST00000568605 LINC00467Q9BRT7 94 aa9.28□□□□□ -0.92
CLK3-224ENST00000568605 CBY3A6NI87 242 aa9.27□□□□□ -0.93
CLK3-224ENST00000568605 GGTLC3B5MD39 225 aa9.27□□□□□ -0.93
CLK3-224ENST00000568605 IGLL5B9A064 214 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 152.9 ms