RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	AP3S1	Q92572	193 aa		10.67	□□□□□ -0.7
CLK3-223	ENST00000568488	SAT2	Q96F10	170 aa	Predicted RBP	10.67	□□□□□ -0.7
CLK3-223	ENST00000568488	SCP2D1	Q9UJQ7	156 aa		10.67	□□□□□ -0.7
CLK3-223	ENST00000568488	LOC100131303	A0A0U1RQF7	123 aa		10.66	□□□□□ -0.7
CLK3-223	ENST00000568488	RBFOX3	A6NFN3	312 aa		10.66	□□□□□ -0.7
CLK3-223	ENST00000568488	COX7A2P2	O60397	106 aa		10.66	□□□□□ -0.7
CLK3-223	ENST00000568488	CCNK	O75909	580 aa		10.66	□□□□□ -0.7
CLK3-223	ENST00000568488	IGLC2	P0DOY2	106 aa		10.66	□□□□□ -0.7
CLK3-223	ENST00000568488	SLC25A6	P12236	298 aa		10.66	□□□□□ -0.7
CLK3-223	ENST00000568488	ASIP	P42127	132 aa		10.66	□□□□□ -0.7
CLK3-223	ENST00000568488	OPCML	Q14982	345 aa		10.66	□□□□□ -0.7
CLK3-223	ENST00000568488	MORN5	Q5VZ52	161 aa		10.66	□□□□□ -0.7
CLK3-223	ENST00000568488		Q6ZQT7	251 aa		10.66	□□□□□ -0.7
CLK3-223	ENST00000568488	NPVF	Q9HCQ7	196 aa		10.66	□□□□□ -0.7
CLK3-223	ENST00000568488	MCUB	Q9NWR8	336 aa		10.66	□□□□□ -0.7
CLK3-223	ENST00000568488	RPL37A	P61513	92 aa	Known RBP	10.65	□□□□□ -0.7
CLK3-223	ENST00000568488	ACOT6	Q3I5F7	207 aa	Predicted RBP	10.65	□□□□□ -0.7
CLK3-223	ENST00000568488	TDRG1	Q3Y452	100 aa		10.65	□□□□□ -0.7
CLK3-223	ENST00000568488	PXDC1	Q5TGL8	231 aa		10.65	□□□□□ -0.7
CLK3-223	ENST00000568488	OR10P1	Q8NGE3	313 aa		10.65	□□□□□ -0.7
CLK3-223	ENST00000568488	LINC00477	Q96M19	166 aa		10.65	□□□□□ -0.7
CLK3-223	ENST00000568488	AGPAT4-IT1	Q9H0P7	198 aa		10.65	□□□□□ -0.7
CLK3-223	ENST00000568488	VCX3A	Q9NNX9	186 aa		10.65	□□□□□ -0.7
CLK3-223	ENST00000568488	PSENEN	Q9NZ42	101 aa		10.65	□□□□□ -0.7
CLK3-223	ENST00000568488	TNXB	P22105	4242 aa		10.65	□□□□□ -0.71
CLK3-223	ENST00000568488		M0R3E3	92 aa		10.64	□□□□□ -0.71
CLK3-223	ENST00000568488	HNRNPA3	P51991	378 aa	Known RBP	10.64	□□□□□ -0.71
CLK3-223	ENST00000568488	MRPS10	P82664	201 aa	Known RBP	10.64	□□□□□ -0.71
CLK3-223	ENST00000568488	ASAH1	Q13510	395 aa		10.64	□□□□□ -0.71
CLK3-223	ENST00000568488	SH2D6	Q7Z4S9	175 aa		10.64	□□□□□ -0.71
CLK3-223	ENST00000568488	OR10G4	Q8NGN3	311 aa		10.64	□□□□□ -0.71
CLK3-223	ENST00000568488	FUNDC2	Q9BWH2	189 aa		10.64	□□□□□ -0.71
CLK3-223	ENST00000568488	CCDC59	Q9P031	241 aa	Known RBP	10.64	□□□□□ -0.71
CLK3-223	ENST00000568488	RABL2B	Q9UNT1	228 aa		10.64	□□□□□ -0.71
CLK3-223	ENST00000568488	HOXB5	P09067	269 aa		10.63	□□□□□ -0.71
CLK3-223	ENST00000568488	GUK1	Q16774	197 aa		10.63	□□□□□ -0.71
CLK3-223	ENST00000568488	C10orf113	Q5VZT2	155 aa		10.63	□□□□□ -0.71
CLK3-223	ENST00000568488	SMIM4	Q8WVI0	70 aa		10.63	□□□□□ -0.71
CLK3-223	ENST00000568488	BAALC	Q8WXS3	180 aa		10.63	□□□□□ -0.71
CLK3-223	ENST00000568488	TMEM37	Q8WXS4	190 aa		10.63	□□□□□ -0.71
CLK3-223	ENST00000568488	FAM19A4	Q96LR4	140 aa		10.63	□□□□□ -0.71
CLK3-223	ENST00000568488		K7EPK0	472 aa		10.62	□□□□□ -0.71
CLK3-223	ENST00000568488	RGS5	O15539	181 aa		10.62	□□□□□ -0.71
CLK3-223	ENST00000568488	MT1HL1	P0DM35	61 aa		10.62	□□□□□ -0.71
CLK3-223	ENST00000568488	VAMP1	P23763	118 aa		10.62	□□□□□ -0.71
CLK3-223	ENST00000568488	TIRAP	P58753	221 aa		10.62	□□□□□ -0.71
CLK3-223	ENST00000568488	POLR2G	P62487	172 aa	Known RBP eCLIP	10.62	□□□□□ -0.71
CLK3-223	ENST00000568488	ZNF846	Q147U1	533 aa		10.62	□□□□□ -0.71
CLK3-223	ENST00000568488	C4orf46	Q504U0	113 aa		10.62	□□□□□ -0.71
CLK3-223	ENST00000568488	PRR9	Q5T870	116 aa		10.62	□□□□□ -0.71
CLK3-223	ENST00000568488	ZNF546	Q86UE3	836 aa		10.62	□□□□□ -0.71
CLK3-223	ENST00000568488	DAZAP1	Q96EP5	407 aa	Known RBP	10.62	□□□□□ -0.71
CLK3-223	ENST00000568488	MGAT4C	Q9UBM8	478 aa		10.62	□□□□□ -0.71
CLK3-223	ENST00000568488	AGPAT2	O15120	278 aa		10.61	□□□□□ -0.71
CLK3-223	ENST00000568488	METTL15P1	P0C7V9	234 aa		10.61	□□□□□ -0.71
CLK3-223	ENST00000568488	MUC21	Q5SSG8	566 aa		10.61	□□□□□ -0.71
CLK3-223	ENST00000568488	C9orf47	Q6ZRZ4	202 aa		10.61	□□□□□ -0.71
CLK3-223	ENST00000568488	OR4C5	Q8NGB2	326 aa		10.61	□□□□□ -0.71
CLK3-223	ENST00000568488	RAB2B	Q8WUD1	216 aa		10.61	□□□□□ -0.71
CLK3-223	ENST00000568488	MRPL53	Q96EL3	112 aa	Known RBP	10.61	□□□□□ -0.71
CLK3-223	ENST00000568488	SRR	Q9GZT4	340 aa		10.61	□□□□□ -0.71
CLK3-223	ENST00000568488	MIXL1	Q9H2W2	232 aa		10.61	□□□□□ -0.71
CLK3-223	ENST00000568488	BOLA1	Q9Y3E2	137 aa		10.61	□□□□□ -0.71
CLK3-223	ENST00000568488	IGHV3-16	A0A0C4DH30	117 aa		10.6	□□□□□ -0.71
CLK3-223	ENST00000568488	ANKRD20A5P	A0PJZ0	165 aa		10.6	□□□□□ -0.71
CLK3-223	ENST00000568488	CRISP2	P16562	243 aa		10.6	□□□□□ -0.71
CLK3-223	ENST00000568488	LAGE3	Q14657	143 aa		10.6	□□□□□ -0.71
CLK3-223	ENST00000568488	TMEM128	Q5BJH2	165 aa		10.6	□□□□□ -0.71
CLK3-223	ENST00000568488	ZFAND2A	Q8N6M9	145 aa		10.6	□□□□□ -0.71
CLK3-223	ENST00000568488	RASL10A	Q92737	203 aa		10.6	□□□□□ -0.71
CLK3-223	ENST00000568488	TRAV4	A0A0B4J268	109 aa		10.59	□□□□□ -0.71
CLK3-223	ENST00000568488	SSSCA1	O60232	199 aa		10.59	□□□□□ -0.71
CLK3-223	ENST00000568488	NMB	P08949	121 aa		10.59	□□□□□ -0.71
CLK3-223	ENST00000568488	IL18	Q14116	193 aa		10.59	□□□□□ -0.71
CLK3-223	ENST00000568488	TMEM78	Q5T7P6	136 aa		10.59	□□□□□ -0.71
CLK3-223	ENST00000568488	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	10.58	□□□□□ -0.72
CLK3-223	ENST00000568488		A0A087WXM4	84 aa		10.58	□□□□□ -0.72
CLK3-223	ENST00000568488	IGKV2D-40	P01614	121 aa	Predicted RBP	10.58	□□□□□ -0.72
CLK3-223	ENST00000568488	PFN1	P07737	140 aa	Known RBP	10.58	□□□□□ -0.72
CLK3-223	ENST00000568488	SPX	Q9BT56	116 aa		10.58	□□□□□ -0.72
CLK3-223	ENST00000568488	PRELID1	Q9Y255	219 aa		10.58	□□□□□ -0.72
CLK3-223	ENST00000568488	TIMM9	Q9Y5J7	89 aa		10.58	□□□□□ -0.72
CLK3-223	ENST00000568488	TRBV19	A0A075B6N1	114 aa		10.57	□□□□□ -0.72
CLK3-223	ENST00000568488	TRAV8-3	A0A0A6YYJ7	113 aa		10.57	□□□□□ -0.72
CLK3-223	ENST00000568488	FNDC10	F2Z333	226 aa		10.57	□□□□□ -0.72
CLK3-223	ENST00000568488	CTDSP2	O14595	271 aa		10.57	□□□□□ -0.72
CLK3-223	ENST00000568488	ZNF253	O75346	499 aa		10.57	□□□□□ -0.72
CLK3-223	ENST00000568488	IGLV2-11	P01706	119 aa		10.57	□□□□□ -0.72
CLK3-223	ENST00000568488	HIST1H1E	P10412	219 aa	Known RBP	10.57	□□□□□ -0.72
CLK3-223	ENST00000568488	ID3	Q02535	119 aa		10.57	□□□□□ -0.72
CLK3-223	ENST00000568488	TMEM183B	Q1AE95	376 aa		10.57	□□□□□ -0.72
CLK3-223	ENST00000568488		Q6ZRG5	221 aa		10.57	□□□□□ -0.72
CLK3-223	ENST00000568488	TMEM183A	Q8IXX5	376 aa		10.57	□□□□□ -0.72
CLK3-223	ENST00000568488	EXOC3-AS1	Q8N2X6	119 aa		10.57	□□□□□ -0.72
CLK3-223	ENST00000568488		Q8N3U1	123 aa		10.57	□□□□□ -0.72
CLK3-223	ENST00000568488		Q8N976	141 aa		10.57	□□□□□ -0.72
CLK3-223	ENST00000568488	SMIM8	Q96KF7	97 aa		10.57	□□□□□ -0.72
CLK3-223	ENST00000568488	SOST	Q9BQB4	213 aa		10.57	□□□□□ -0.72
CLK3-223	ENST00000568488	CTDSPL	O15194	276 aa		10.56	□□□□□ -0.72
CLK3-223	ENST00000568488	LELP1	Q5T871	98 aa		10.56	□□□□□ -0.72

Retrieved 100 of 20,778 RNA–protein pairs in 102 ms