RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 SMIM21Q3B7S5 101 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 KHDC3LQ587J8 217 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 PDZD11Q5EBL8 140 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 BRD3OSQ6XYD6 125 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 SSX8Q7RTT4 187 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 ZFP82Q8N141 532 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 FAM213BQ8TBF2 198 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 MAFIPQ8WZ33 124 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 MALSU1Q96EH3 234 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 TM2D3Q9BRN9 247 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 FAAP24Q9BTP7 215 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 MANBALQ9NQG1 85 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 COA4Q9NYJ1 87 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 TAAR3PQ9P1P4 343 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 METTL1Q9UBP6 276 aaKnown RBP2.33□□□□□ -2.04
LINC00560-201ENST00000564593 TIMM9Q9Y5J7 89 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 U3KQA8 63 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 SDK2Q58EX2 2172 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 MED12Q93074 2177 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 PIEZO1Q92508 2521 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 KNTC1P50748 2209 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 ZNF407Q9C0G0 2248 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 LAMA2P24043 3122 aaKnown RBP2.33□□□□□ -2.04
LINC00560-201ENST00000564593 C5orf42Q9H799 3197 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 TANC2Q9HCD6 1990 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 FREM1Q5H8C1 2179 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 ZDBF2Q9HCK1 2354 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 CHD3Q12873 2000 aaKnown RBP2.32□□□□□ -2.04
LINC00560-201ENST00000564593 RTTNQ86VV8 2226 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 IGHV3-15A0A0B4J1V0 119 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 TMEM30CPA0ZSE6 113 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 C17orf51A8MQB3 221 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 C15orf65H3BRN8 121 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 MT-CO2P00403 227 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 P0C880 135 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 COL8A2P25067 703 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 NFYBP25208 207 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 OPRM1P35372 400 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 ZNF83P51522 516 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 DLX6P56179 175 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 ARF6P62330 175 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 PIGYQ3MUY2 71 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 NMSQ5H8A3 153 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 ZIC4Q8N9L1 334 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 OR5C1Q8NGR4 320 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 CT55Q8WUE5 264 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 SFT2D1Q8WV19 159 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 TXNDC17Q9BRA2 123 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 ADAT1Q9BUB4 502 aaKnown RBP2.32□□□□□ -2.04
LINC00560-201ENST00000564593 C1QTNF6Q9BXI9 259 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 SMIM3Q9BZL3 60 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 TLNRD1Q9H1K6 362 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 SPANXB1Q9NS25 103 aaPredicted RBP2.32□□□□□ -2.04
LINC00560-201ENST00000564593 TMEM242Q9NWH2 141 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 TRAPPC2LQ9UL33 140 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 TP53TG1Q9Y2A0 90 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 SETXQ7Z333 2677 aaKnown RBP2.32□□□□□ -2.04
LINC00560-201ENST00000564593 MED12LQ86YW9 2145 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 HEATR1Q9H583 2144 aaKnown RBP2.32□□□□□ -2.04
LINC00560-201ENST00000564593 COL6A3P12111 3177 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 USF3Q68DE3 2245 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.32□□□□□ -2.04
LINC00560-201ENST00000564593 TRGV5A0A0B4J1U4 118 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 TINCRA0A1B0GVN0 87 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 C7orf77A4D0Y5 90 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 ZNF729A6NN14 1252 aaPredicted RBP2.32□□□□□ -2.04
LINC00560-201ENST00000564593 TMEM250H0YL14 139 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 SYNGR2O43760 224 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 TNFSF15O95150 251 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 BCL2P10415 239 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 ADCYAP1P18509 176 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 ATP6V0CP27449 155 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 PSMB3P49720 205 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 POLR2GP62487 172 aaKnown RBP eCLIP2.32□□□□□ -2.04
LINC00560-201ENST00000564593 AKR1C1Q04828 323 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 RTL8BQ17RB0 113 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 AMMECR1LQ6DCA0 310 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 LYZL2Q7Z4W2 148 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 FAM19A5Q7Z5A7 132 aaPredicted RBP2.32□□□□□ -2.04
LINC00560-201ENST00000564593 OR51H1Q8NH63 302 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 OR5P3Q8WZ94 311 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 GALMQ96C23 342 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 MRAP2Q96G30 205 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 PACRGQ96M98 296 aaPredicted RBP2.32□□□□□ -2.04
LINC00560-201ENST00000564593 TP53RKQ96S44 253 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 C12orf57Q99622 126 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 TMEM147Q9BVK8 224 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 TTTY12Q9BZ98 90 aa2.32□□□□□ -2.04
LINC00560-201ENST00000564593 TRAV17A0A0B4J275 112 aa2.31□□□□□ -2.04
LINC00560-201ENST00000564593 IQCF6A8MYZ5 107 aa2.31□□□□□ -2.04
LINC00560-201ENST00000564593 F6UZH7 168 aa2.31□□□□□ -2.04
LINC00560-201ENST00000564593 TSTD3H0UI37 97 aa2.31□□□□□ -2.04
LINC00560-201ENST00000564593 H3BQ15 152 aa2.31□□□□□ -2.04
LINC00560-201ENST00000564593 PDE6DO43924 150 aa2.31□□□□□ -2.04
LINC00560-201ENST00000564593 PGLYRP1O75594 196 aaPredicted RBP2.31□□□□□ -2.04
LINC00560-201ENST00000564593 IGKV1D-33P01593 117 aa2.31□□□□□ -2.04
LINC00560-201ENST00000564593 IGKV1-33P01594 117 aa2.31□□□□□ -2.04
LINC00560-201ENST00000564593 CRYBA1P05813 215 aa2.31□□□□□ -2.04
LINC00560-201ENST00000564593 METTL15P1P0C7V9 234 aa2.31□□□□□ -2.04
LINC00560-201ENST00000564593 CCL4P13236 92 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms